Wall clock time and date at job start Mon Mar 30 2020 05:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47274 * 2 1 4 4 C 1.50700 * 109.47185 * 239.99773 * 2 1 3 5 5 H 1.07998 * 120.00265 * 240.00429 * 4 2 1 6 6 C 1.37879 * 119.99929 * 59.99776 * 4 2 1 7 7 N 1.31518 * 119.99565 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00127 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47033 * 90.00427 * 8 6 4 10 10 H 1.48493 * 109.47340 * 210.00378 * 8 6 4 11 11 H 1.48503 * 109.47190 * 330.00568 * 8 6 4 12 12 N 1.46902 * 109.46972 * 120.00015 * 2 1 3 13 13 C 1.46898 * 111.00405 * 58.95252 * 12 2 1 14 14 C 1.38634 * 110.99915 * 294.99629 * 12 2 1 15 15 N 1.33199 * 120.48342 * 81.62299 * 14 12 2 16 16 C 1.31722 * 120.88170 * 180.02562 * 15 14 12 17 17 N 1.31757 * 121.91151 * 359.97438 * 16 15 14 18 18 C 1.33163 * 120.88097 * 0.02562 * 17 16 15 19 19 N 1.38627 * 120.49143 * 180.02562 * 18 17 16 20 20 C 1.39127 * 120.48901 * 261.63911 * 14 12 2 21 21 N 1.48024 * 120.86316 * 359.95967 * 20 14 12 22 22 O 1.21800 * 120.00110 * 94.92310 * 21 20 14 23 23 O 1.21805 * 120.00310 * 274.92883 * 21 20 14 24 24 H 1.09007 * 109.47040 * 300.00004 * 1 2 3 25 25 H 1.09003 * 109.46801 * 59.99642 * 1 2 3 26 26 H 1.08992 * 109.47200 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99481 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.47102 * 288.76553 * 13 12 2 29 29 H 1.09000 * 109.46834 * 48.76289 * 13 12 2 30 30 H 1.08996 * 109.47605 * 168.76254 * 13 12 2 31 31 H 1.07996 * 119.04781 * 179.97438 * 16 15 14 32 32 H 0.96999 * 119.99730 * 359.97438 * 19 18 17 33 33 H 0.97001 * 120.00588 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1404 -5.1119 11 1 3.6308 -1.7567 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2461 14 6 1.6696 -0.0020 2.3495 15 7 0.4527 -0.1361 2.8742 16 6 0.1116 0.5166 3.9663 17 7 0.9488 1.3241 4.5852 18 6 2.1838 1.5123 4.1241 19 7 3.0582 2.3633 4.7821 20 6 2.5841 0.8415 2.9723 21 7 3.9475 1.0203 2.4245 22 8 4.1871 1.9539 1.6798 23 8 4.8300 0.2337 2.7182 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.7094 1.1617 -3.4844 28 1 0.4603 -2.0752 1.4641 29 1 1.7022 -2.5560 0.2830 30 1 2.0578 -2.6237 2.0257 31 1 -0.8832 0.3862 4.3660 32 1 2.7719 2.8271 5.5844 33 1 3.9561 2.4955 4.4398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133229963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:22 Heat of formation + Delta-G solvation = 51.756450 kcal Electronic energy + Delta-G solvation = -21174.013177 eV Core-core repulsion = 17852.473138 eV Total energy + Delta-G solvation = -3321.540038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.45950 -42.18479 -39.49509 -37.57443 -36.87724 -35.18102 -33.42440 -32.44339 -30.81236 -28.16038 -27.34020 -27.25613 -24.60970 -24.34678 -22.02184 -20.54155 -20.22788 -19.87589 -19.02398 -18.41973 -17.87644 -17.47828 -17.07434 -16.32694 -16.25237 -15.81695 -15.39253 -14.85484 -14.29239 -13.60285 -13.45244 -13.28569 -13.08653 -12.86964 -12.80066 -12.72084 -12.63667 -12.26306 -12.21039 -12.12080 -12.02126 -11.42634 -11.20473 -10.71615 -10.57270 -10.08873 -9.68132 -8.20951 -6.34591 -0.74190 -0.59147 -0.22882 0.31760 1.41601 1.43615 1.54161 1.69080 2.20892 2.34222 2.43902 2.86221 3.09554 3.27107 3.42955 3.67287 4.31840 4.56041 4.62908 4.76019 4.87118 4.87840 5.00081 5.03964 5.25174 5.34445 5.49248 5.58059 5.60584 5.82595 6.08301 6.22065 6.31889 6.45472 6.72269 6.77199 7.34441 8.85787 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.006941 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.003148 B = 4032.995073 C = 4527.655847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.233 3.767 3 H -0.003 1.003 4 C -0.527 4.527 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.516 5.516 13 C 0.040 3.960 14 C 0.438 3.562 15 N -0.577 5.577 16 C 0.383 3.617 17 N -0.567 5.567 18 C 0.497 3.503 19 N -0.803 5.803 20 C -0.224 4.224 21 N 0.053 4.947 22 O -0.182 6.182 23 O -0.129 6.129 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.265 0.735 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.258 0.742 32 H 0.434 0.566 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 0.321 15.067 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.129 3.871 3 H 0.015 0.985 4 C -0.565 4.565 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.238 5.238 13 C -0.106 4.106 14 C 0.202 3.798 15 N -0.301 5.301 16 C 0.095 3.905 17 N -0.295 5.295 18 C 0.247 3.753 19 N -0.347 5.347 20 C -0.319 4.319 21 N 0.581 4.419 22 O -0.395 6.395 23 O -0.358 6.358 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.274 0.726 32 H 0.270 0.730 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.050 0.280 15.469 15.607 hybrid contribution 0.965 0.258 -1.319 1.654 sum -1.085 0.538 14.150 14.202 Atomic orbital electron populations 1.22147 0.97669 1.00367 1.00364 1.19152 0.91686 0.92023 0.84205 0.98525 1.21207 1.31993 1.13150 0.90121 0.91818 1.25704 0.94918 0.95620 1.01935 1.70012 1.37119 1.23731 1.24562 0.85410 0.78887 0.78244 0.78262 1.19381 1.20847 1.19498 1.60352 1.58215 1.05036 1.00183 1.22297 0.99591 0.85585 1.03143 1.20028 0.85677 0.84107 0.90035 1.69165 1.14979 1.30055 1.15910 1.25932 0.99589 0.81417 0.83568 1.68469 1.00599 1.25180 1.35225 1.18036 0.88987 0.84576 0.83722 1.42273 1.14549 1.46311 1.31580 1.21961 0.86844 1.17938 1.05188 1.42994 1.02073 0.98752 0.98107 1.94577 1.88210 1.24570 1.32161 1.94463 1.40017 1.39395 1.61957 0.94932 0.91751 0.93778 0.92542 0.92467 0.90196 0.91347 0.72629 0.73050 0.75171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.08 8.12 71.98 0.58 -6.50 16 2 C 0.23 12.07 2.32 44.17 0.10 12.17 16 3 H 0.00 -0.19 8.11 -2.38 -0.02 -0.21 16 4 C -0.53 -29.01 7.78 25.60 0.20 -28.81 16 5 H 0.06 3.48 6.83 -2.91 -0.02 3.46 16 6 C 0.02 1.00 5.30 84.65 0.45 1.44 16 7 N -0.92 -52.47 11.32 21.45 0.24 -52.23 16 8 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 12 N -0.52 -22.97 4.51 -706.49 -3.19 -26.16 16 13 C 0.04 1.55 8.51 127.69 1.09 2.64 16 14 C 0.44 17.13 5.10 132.95 0.68 17.81 16 15 N -0.58 -18.88 7.37 -197.84 -1.46 -20.34 16 16 C 0.38 9.26 12.28 180.92 2.22 11.48 16 17 N -0.57 -14.12 10.47 -197.84 -2.07 -16.19 16 18 C 0.50 13.99 7.81 132.97 1.04 15.03 16 19 N -0.80 -15.97 9.06 -55.23 -0.50 -16.47 16 20 C -0.22 -8.19 6.26 36.81 0.23 -7.96 16 21 N 0.05 2.13 3.37 -45.42 -0.15 1.97 16 22 O -0.18 -7.92 19.25 18.89 0.36 -7.55 16 23 O -0.13 -5.08 19.26 18.88 0.36 -4.72 16 24 H 0.03 1.44 6.21 -2.38 -0.01 1.43 16 25 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 26 H 0.04 2.02 6.64 -2.39 -0.02 2.01 16 27 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.06 2.11 6.16 -2.38 -0.01 2.09 16 29 H 0.08 3.26 6.26 -2.39 -0.01 3.25 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.26 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.43 5.69 8.95 -92.71 -0.83 4.86 16 33 H 0.42 8.21 8.16 -92.71 -0.76 7.46 16 Total: -1.00 -67.53 286.86 1.82 -65.71 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -0.39 Total: 13.09 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 6.59 Total: 17.31 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -7.13 Total: -129.42 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.73 Total: -12.27 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.53 1.82 -65.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133229963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.468 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds