Wall clock time and date at job start Mon Mar 30 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47124 * 2 1 4 4 C 1.46504 * 120.00041 * 72.67784 * 3 2 1 5 5 C 1.50700 * 109.47076 * 90.00229 * 4 3 2 6 6 H 1.08000 * 119.99898 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99708 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99881 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00099 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47244 * 89.99776 * 9 7 5 11 11 H 1.48501 * 109.46805 * 209.99830 * 9 7 5 12 12 H 1.48495 * 109.46859 * 329.99489 * 9 7 5 13 13 C 1.34777 * 120.00228 * 252.67782 * 3 2 1 14 14 O 1.21574 * 120.00437 * 181.75096 * 13 3 2 15 15 C 1.47704 * 119.99731 * 1.75015 * 13 3 2 16 16 C 1.39631 * 120.14132 * 26.35394 * 15 13 3 17 17 C 1.38335 * 119.81632 * 179.78957 * 16 15 13 18 18 O 1.35962 * 119.94208 * 180.23349 * 17 16 15 19 19 C 1.38897 * 120.10737 * 0.49209 * 17 16 15 20 20 C 1.38150 * 120.28479 * 359.73907 * 19 17 16 21 21 C 1.38308 * 120.17705 * 0.02603 * 20 19 17 22 22 F 1.35104 * 120.05189 * 179.97438 * 21 20 19 23 23 H 1.08993 * 109.47326 * 299.99957 * 1 2 3 24 24 H 1.09004 * 109.47344 * 60.00531 * 1 2 3 25 25 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47093 * 240.00008 * 2 1 3 27 27 H 1.09000 * 109.47362 * 119.99965 * 2 1 3 28 28 H 1.09000 * 109.46740 * 210.00203 * 4 3 2 29 29 H 1.08995 * 109.46775 * 329.99853 * 4 3 2 30 30 H 0.96993 * 120.00235 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.08906 * 0.02800 * 16 15 13 32 32 H 0.96702 * 114.00080 * 270.25294 * 18 17 16 33 33 H 1.07998 * 119.85945 * 179.72058 * 19 17 16 34 34 H 1.07997 * 119.90754 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9063 2.1977 1.2112 5 6 3.1467 2.0256 2.0495 6 1 3.9390 1.3729 1.7139 7 6 3.2701 2.7014 3.2450 8 7 4.3523 2.5509 3.9768 9 14 1.8993 3.8298 3.8258 10 1 0.9358 3.0553 4.6485 11 1 2.4752 4.9289 4.6416 12 1 1.1974 4.4022 2.6491 13 6 2.5706 1.9007 -1.1142 14 8 3.0047 3.0362 -1.1049 15 6 2.6484 1.0904 -2.3467 16 6 1.7265 0.0662 -2.5718 17 6 1.8029 -0.6857 -3.7305 18 8 0.9037 -1.6806 -3.9544 19 6 2.8001 -0.4295 -4.6628 20 6 3.7174 0.5797 -4.4422 21 6 3.6490 1.3418 -3.2901 22 9 4.5477 2.3278 -3.0768 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7978 3.2462 0.9337 29 1 1.0342 1.8812 1.7833 30 1 4.4393 3.0265 4.8176 31 1 0.9535 -0.1359 -1.8451 32 1 1.1753 -2.5416 -3.6081 33 1 2.8588 -1.0219 -5.5639 34 1 4.4900 0.7739 -5.1714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294684836.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:55 Heat of formation + Delta-G solvation = -62.010571 kcal Electronic energy + Delta-G solvation = -20517.792982 eV Core-core repulsion = 17139.106922 eV Total energy + Delta-G solvation = -3378.686059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.69375 -40.38230 -38.73750 -36.44187 -35.73197 -32.95036 -31.57021 -30.41975 -29.31924 -27.85247 -24.23655 -23.35887 -22.72992 -21.85627 -19.51269 -18.09228 -17.49145 -16.97616 -16.89577 -16.44346 -15.74349 -15.25982 -15.08551 -14.85038 -14.31679 -13.95813 -13.80244 -13.37693 -13.07826 -12.72415 -12.51192 -12.22648 -11.99248 -11.77837 -11.74810 -11.59185 -11.00854 -10.97130 -10.62644 -10.52657 -10.11728 -9.57594 -9.30151 -9.00649 -8.59966 -8.59009 -7.80135 -6.09258 -4.08254 0.69527 0.92299 2.94317 3.25915 3.34074 3.38912 3.53097 3.81122 3.93237 4.20327 4.39004 4.51704 4.67255 4.89248 5.04509 5.19223 5.23931 5.39984 5.51987 5.59087 5.61097 5.81619 5.90674 5.93533 6.05170 6.11252 6.34905 6.52330 6.64900 6.93649 7.24707 7.38534 7.58869 8.11687 8.44609 8.82264 8.94658 9.50321 11.04174 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.006024 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.855076 B = 4646.657542 C = 5357.253761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 N -0.581 5.581 4 C 0.217 3.783 5 C -0.529 4.529 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.547 3.453 14 O -0.520 6.520 15 C -0.142 4.142 16 C -0.115 4.115 17 C 0.081 3.919 18 O -0.493 6.493 19 C -0.100 4.100 20 C -0.150 4.150 21 C 0.146 3.854 22 F -0.114 7.114 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.174 0.826 32 H 0.390 0.610 33 H 0.140 0.860 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 -10.627 -15.392 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.051 4.051 3 N -0.311 5.311 4 C 0.097 3.903 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.333 3.667 14 O -0.396 6.396 15 C -0.146 4.146 16 C -0.133 4.133 17 C 0.036 3.964 18 O -0.303 6.303 19 C -0.119 4.119 20 C -0.169 4.169 21 C 0.126 3.874 22 F -0.092 7.092 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.191 0.809 32 H 0.246 0.754 33 H 0.158 0.842 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.900 -9.454 -15.425 19.363 hybrid contribution -0.128 0.275 0.756 0.815 sum -7.028 -9.180 -14.669 18.677 Atomic orbital electron populations 1.22270 0.96223 1.02175 1.02889 1.22321 0.94021 0.84485 1.04289 1.47788 1.58242 1.12990 1.12129 1.19700 0.97564 0.91548 0.81521 1.21305 1.02980 1.28584 1.03923 0.90718 1.24847 0.95703 0.96095 0.96284 1.69890 1.27085 1.42804 1.13696 0.86872 0.82527 0.81224 0.79314 1.20061 1.20856 1.18814 1.17864 0.79544 0.86648 0.82663 1.90816 1.46385 1.18389 1.84033 1.20247 0.97726 0.99458 0.97160 1.22577 0.99643 0.94202 0.96916 1.18310 0.91256 0.93374 0.93458 1.84873 1.43924 1.19946 1.81583 1.21374 0.92958 0.97776 0.99812 1.20985 1.01737 0.97110 0.97057 1.17731 0.88174 0.87487 0.94017 1.91607 1.64563 1.58443 1.94637 0.91217 0.92342 0.91416 0.88706 0.89983 0.93952 0.95299 0.92526 0.80926 0.75415 0.84248 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.11 37.16 0.34 -1.87 16 2 C 0.07 1.11 5.62 -4.05 -0.02 1.09 16 3 N -0.58 -12.18 2.51 -176.23 -0.44 -12.62 16 4 C 0.22 5.34 4.15 -5.19 -0.02 5.31 16 5 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 6 H 0.07 2.39 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 9 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 13 C 0.55 11.95 7.43 -12.39 -0.09 11.85 16 14 O -0.52 -13.64 15.37 5.30 0.08 -13.55 16 15 C -0.14 -2.41 5.57 -104.93 -0.58 -2.99 16 16 C -0.12 -1.51 7.40 -39.03 -0.29 -1.79 16 17 C 0.08 0.87 6.69 -39.30 -0.26 0.60 16 18 O -0.49 -4.25 13.50 -19.62 -0.26 -4.52 16 19 C -0.10 -0.99 9.97 -39.37 -0.39 -1.38 16 20 C -0.15 -1.73 10.01 -39.59 -0.40 -2.13 16 21 C 0.15 2.36 7.24 -38.97 -0.28 2.07 16 22 F -0.11 -2.18 15.89 2.25 0.04 -2.14 16 23 H 0.07 0.95 7.28 -51.93 -0.38 0.57 16 24 H 0.06 0.70 7.10 -51.93 -0.37 0.34 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.10 1.24 3.86 -53.32 -0.21 1.04 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.04 1.13 6.50 -51.93 -0.34 0.79 16 29 H 0.03 0.66 6.59 -51.93 -0.34 0.31 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.17 2.07 2.81 -52.49 -0.15 1.93 16 32 H 0.39 1.45 9.06 45.56 0.41 1.86 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 290.02 15.07 4.37 4.37 Total: -1.00 -36.29 290.02 -5.21 -41.50 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -2.65 Total: -0.01 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.45 Total: -2.89 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.33 Total: -39.69 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.18 Total: -18.07 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.29 -5.21 -41.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294684836.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.510 kcal (2) G-P(sol) polarization free energy of solvation -36.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds