Wall clock time and date at job start Mon Mar 30 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42106 * 109.47159 * 2 1 4 4 C 1.81403 * 103.00085 * 243.61407 * 2 1 3 5 5 C 1.53000 * 109.47109 * 179.97438 * 4 2 1 6 6 N 1.46906 * 109.46800 * 179.97438 * 5 4 2 7 7 C 1.46896 * 110.99715 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.47177 * 180.02562 * 7 6 5 9 9 C 1.38636 * 119.74644 * 269.73131 * 8 7 6 10 10 C 1.37616 * 120.24637 * 179.72120 * 9 8 7 11 11 C 1.40718 * 119.74683 * 0.56446 * 10 9 8 12 12 C 1.41390 * 120.24661 * 179.68321 * 11 10 9 13 13 H 1.08000 * 120.00035 * 204.40977 * 12 11 10 14 14 C 1.39944 * 120.00193 * 24.40881 * 12 11 10 15 15 N 1.30821 * 119.99681 * 17.84523 * 14 12 11 16 16 Si 1.86799 * 120.00351 * 197.84818 * 14 12 11 17 17 H 1.48500 * 109.47267 * 89.99843 * 16 14 12 18 18 H 1.48494 * 109.47322 * 209.99982 * 16 14 12 19 19 H 1.48500 * 109.46911 * 330.00003 * 16 14 12 20 20 C 1.40719 * 119.50840 * 359.71135 * 11 10 9 21 21 C 1.37613 * 119.74586 * 359.97438 * 20 11 10 22 22 H 1.08995 * 109.47462 * 56.38735 * 1 2 3 23 23 H 1.08999 * 109.47116 * 296.38297 * 1 2 3 24 24 H 1.09004 * 109.46922 * 176.38965 * 1 2 3 25 25 H 1.09004 * 109.46591 * 299.99967 * 4 2 1 26 26 H 1.08993 * 109.47165 * 59.99958 * 4 2 1 27 27 H 1.08992 * 109.47317 * 299.99949 * 5 4 2 28 28 H 1.09005 * 109.47198 * 60.00387 * 5 4 2 29 29 H 1.00899 * 110.99497 * 56.05188 * 6 5 4 30 30 H 1.09001 * 109.47279 * 299.99952 * 7 6 5 31 31 H 1.08996 * 109.47598 * 60.00596 * 7 6 5 32 32 H 1.07999 * 119.87534 * 359.97146 * 9 8 7 33 33 H 1.07996 * 120.12893 * 180.27664 * 10 9 8 34 34 H 0.97000 * 120.00396 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.12684 * 179.97438 * 20 11 10 36 36 H 1.08001 * 119.87952 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2220 -0.7855 -1.5834 5 6 3.7423 -0.8616 -1.7381 6 7 4.0727 -1.4983 -3.0201 7 6 5.5274 -1.5891 -3.2033 8 6 5.8271 -2.2455 -4.5263 9 6 5.9694 -3.6229 -4.5943 10 6 6.2375 -4.2335 -5.7981 11 6 6.3789 -3.4533 -6.9605 12 6 6.6610 -4.0690 -8.2017 13 1 7.1475 -3.5070 -8.9851 14 6 6.3099 -5.4068 -8.4149 15 7 5.4313 -5.9845 -7.6366 16 14 7.0958 -6.3677 -9.8108 17 1 8.3322 -7.0291 -9.3219 18 1 6.1442 -7.3972 -10.3003 19 1 7.4358 -5.4406 -10.9199 20 6 6.2381 -2.0555 -6.8786 21 6 5.9636 -1.4670 -5.6653 22 1 -0.3634 0.5688 -0.8558 23 1 -0.3633 0.4567 0.9206 24 1 -0.3633 -1.0257 -0.0647 25 1 1.8031 -1.7915 -1.6085 26 1 1.8031 -0.1970 -2.3996 27 1 4.1608 0.1445 -1.7132 28 1 4.1616 -1.4500 -0.9219 29 1 3.6410 -1.0080 -3.7891 30 1 5.9586 -0.5882 -3.1887 31 1 5.9588 -2.1824 -2.3971 32 1 5.8655 -4.2192 -3.6999 33 1 6.3436 -5.3070 -5.8496 34 1 5.1881 -6.9118 -7.7841 35 1 6.3450 -1.4470 -7.7644 36 1 5.8554 -0.3944 -5.5998 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398994406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:39 Heat of formation + Delta-G solvation = -26.891550 kcal Electronic energy + Delta-G solvation = -17026.571796 eV Core-core repulsion = 14215.621788 eV Total energy + Delta-G solvation = -2810.950008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.82521 -36.04087 -35.81212 -33.72301 -31.37649 -29.44262 -29.23028 -28.88176 -26.02100 -23.21413 -22.09778 -20.94283 -19.86097 -17.63780 -17.28941 -15.96343 -15.62228 -15.40178 -15.20058 -14.49046 -14.24034 -13.92316 -13.72367 -13.59142 -13.20431 -12.90943 -12.61784 -12.30506 -11.99547 -11.91642 -11.61335 -11.50858 -11.25280 -11.05243 -10.91420 -10.58330 -10.38610 -10.25202 -9.58579 -9.35746 -9.12931 -8.46305 -8.08703 -7.43379 -7.29957 -6.75524 -4.34633 1.30778 2.42680 2.75093 3.06741 3.09032 3.10614 3.18700 3.59751 3.93151 4.49802 4.78436 4.82401 4.84782 4.97873 5.06570 5.50749 5.63453 5.66294 5.74591 5.83963 5.90053 5.98008 6.25904 6.36413 6.45222 6.96755 7.07860 7.30322 7.36474 7.38149 7.62155 7.68317 7.89774 8.06619 8.15758 8.31160 8.65618 8.90291 8.98884 10.18783 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.044374 B = 0.002977 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.848175 B = 9403.051615 C = 9688.713612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.489 4.489 2 S 1.243 4.757 3 O -0.857 6.857 4 C -0.442 4.442 5 C 0.077 3.923 6 N -0.680 5.680 7 C 0.123 3.877 8 C -0.215 4.215 9 C -0.078 4.078 10 C -0.168 4.168 11 C 0.112 3.888 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.228 4.228 21 C -0.086 4.086 22 H 0.078 0.922 23 H 0.104 0.896 24 H 0.113 0.887 25 H 0.126 0.874 26 H 0.082 0.918 27 H 0.027 0.973 28 H 0.080 0.920 29 H 0.340 0.660 30 H 0.018 0.982 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.280 0.720 35 H 0.090 0.910 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 3.345 13.398 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 1.441 4.559 3 O -0.852 6.852 4 C -0.579 4.579 5 C -0.054 4.054 6 N -0.312 5.312 7 C -0.005 4.005 8 C -0.216 4.216 9 C -0.097 4.097 10 C -0.187 4.187 11 C 0.110 3.890 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.247 4.247 21 C -0.105 4.105 22 H 0.097 0.903 23 H 0.122 0.878 24 H 0.132 0.868 25 H 0.145 0.855 26 H 0.101 0.899 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.158 0.842 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.347 2.865 14.378 15.975 hybrid contribution -0.587 1.549 -2.730 3.194 sum -6.934 4.414 11.647 14.256 Atomic orbital electron populations 1.27636 1.21930 1.08078 1.07053 1.70408 0.86275 0.98814 1.00439 1.93123 1.73351 1.36859 1.81916 1.27732 1.02915 1.10543 1.16755 1.21473 0.91606 0.97372 0.94931 1.60711 1.11508 1.56100 1.02852 1.20591 0.86181 0.97249 0.96484 1.18896 1.15762 0.93824 0.93152 1.20498 0.99362 0.93144 0.96721 1.21316 1.06251 0.99895 0.91243 1.17631 0.87525 0.90846 0.93041 1.19606 1.34695 0.95554 0.99445 0.90514 1.25911 0.93037 0.97973 0.97284 1.69833 1.22774 1.13268 1.35751 0.86322 0.79794 0.79423 0.81229 1.19262 1.20331 1.18675 1.20930 1.12699 0.95284 0.95821 1.20363 1.00413 0.96510 0.93164 0.90268 0.87774 0.86839 0.85532 0.89915 0.95443 0.90165 0.84239 0.96348 0.91690 0.89369 0.86469 0.90880 0.89195 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.15 10.74 101.05 1.09 -2.07 16 2 S 1.24 9.74 13.80 -107.50 -1.48 8.25 16 3 O -0.86 -12.95 18.14 -35.23 -0.64 -13.59 16 4 C -0.44 -4.35 6.18 37.16 0.23 -4.12 16 5 C 0.08 0.97 5.69 -3.82 -0.02 0.95 16 6 N -0.68 -10.94 6.49 -115.06 -0.75 -11.68 16 7 C 0.12 2.17 5.80 -4.98 -0.03 2.14 16 8 C -0.21 -4.66 5.42 -104.33 -0.56 -5.22 16 9 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 10 C -0.17 -4.37 8.70 -38.87 -0.34 -4.70 16 11 C 0.11 3.01 5.57 -106.82 -0.60 2.42 16 12 C -0.46 -12.38 9.05 -37.74 -0.34 -12.72 16 13 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 14 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 15 N -0.79 -20.48 10.95 55.55 0.61 -19.87 16 16 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 21 C -0.09 -1.93 9.67 -39.66 -0.38 -2.31 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 24 H 0.11 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.13 1.03 8.14 -51.92 -0.42 0.61 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.34 5.64 8.72 -39.29 -0.34 5.30 16 30 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 32 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.12 3.15 6.15 -52.49 -0.32 2.82 16 34 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 35 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.08 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 320.13 15.07 4.82 4.82 Total: -1.00 -33.32 320.13 -9.56 -42.88 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.28 Total: 7.63 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: -1.81 Total: -32.08 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: -0.14 Total: -31.55 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.64 Total: -13.59 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 16 Polarization: 9.74 SS G_CDS: -1.48 Total: 8.25 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.32 -9.56 -42.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398994406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.987 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds