Wall clock time and date at job start Mon Mar 30 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42106 * 109.47159 * 2 1 4 4 C 1.81403 * 103.00085 * 243.61407 * 2 1 3 5 5 C 1.53000 * 109.47109 * 179.97438 * 4 2 1 6 6 N 1.46906 * 109.46800 * 179.97438 * 5 4 2 7 7 C 1.46896 * 110.99715 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.47177 * 180.02562 * 7 6 5 9 9 C 1.38636 * 119.74644 * 269.73131 * 8 7 6 10 10 C 1.37616 * 120.24637 * 179.72120 * 9 8 7 11 11 C 1.40718 * 119.74683 * 0.56446 * 10 9 8 12 12 C 1.41390 * 120.24661 * 179.68321 * 11 10 9 13 13 H 1.08000 * 120.00035 * 204.40977 * 12 11 10 14 14 C 1.39944 * 120.00193 * 24.40881 * 12 11 10 15 15 N 1.30821 * 119.99681 * 17.84523 * 14 12 11 16 16 Si 1.86799 * 120.00351 * 197.84818 * 14 12 11 17 17 H 1.48500 * 109.47267 * 89.99843 * 16 14 12 18 18 H 1.48494 * 109.47322 * 209.99982 * 16 14 12 19 19 H 1.48500 * 109.46911 * 330.00003 * 16 14 12 20 20 C 1.40719 * 119.50840 * 359.71135 * 11 10 9 21 21 C 1.37613 * 119.74586 * 359.97438 * 20 11 10 22 22 H 1.08995 * 109.47462 * 56.38735 * 1 2 3 23 23 H 1.08999 * 109.47116 * 296.38297 * 1 2 3 24 24 H 1.09004 * 109.46922 * 176.38965 * 1 2 3 25 25 H 1.09004 * 109.46591 * 299.99967 * 4 2 1 26 26 H 1.08993 * 109.47165 * 59.99958 * 4 2 1 27 27 H 1.08992 * 109.47317 * 299.99949 * 5 4 2 28 28 H 1.09005 * 109.47198 * 60.00387 * 5 4 2 29 29 H 1.00899 * 110.99497 * 56.05188 * 6 5 4 30 30 H 1.09001 * 109.47279 * 299.99952 * 7 6 5 31 31 H 1.08996 * 109.47598 * 60.00596 * 7 6 5 32 32 H 1.07999 * 119.87534 * 359.97146 * 9 8 7 33 33 H 1.07996 * 120.12893 * 180.27664 * 10 9 8 34 34 H 0.97000 * 120.00396 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.12684 * 179.97438 * 20 11 10 36 36 H 1.08001 * 119.87952 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2220 -0.7855 -1.5834 5 6 3.7423 -0.8616 -1.7381 6 7 4.0727 -1.4983 -3.0201 7 6 5.5274 -1.5891 -3.2033 8 6 5.8271 -2.2455 -4.5263 9 6 5.9694 -3.6229 -4.5943 10 6 6.2375 -4.2335 -5.7981 11 6 6.3789 -3.4533 -6.9605 12 6 6.6610 -4.0690 -8.2017 13 1 7.1475 -3.5070 -8.9851 14 6 6.3099 -5.4068 -8.4149 15 7 5.4313 -5.9845 -7.6366 16 14 7.0958 -6.3677 -9.8108 17 1 8.3322 -7.0291 -9.3219 18 1 6.1442 -7.3972 -10.3003 19 1 7.4358 -5.4406 -10.9199 20 6 6.2381 -2.0555 -6.8786 21 6 5.9636 -1.4670 -5.6653 22 1 -0.3634 0.5688 -0.8558 23 1 -0.3633 0.4567 0.9206 24 1 -0.3633 -1.0257 -0.0647 25 1 1.8031 -1.7915 -1.6085 26 1 1.8031 -0.1970 -2.3996 27 1 4.1608 0.1445 -1.7132 28 1 4.1616 -1.4500 -0.9219 29 1 3.6410 -1.0080 -3.7891 30 1 5.9586 -0.5882 -3.1887 31 1 5.9588 -2.1824 -2.3971 32 1 5.8655 -4.2192 -3.6999 33 1 6.3436 -5.3070 -5.8496 34 1 5.1881 -6.9118 -7.7841 35 1 6.3450 -1.4470 -7.7644 36 1 5.8554 -0.3944 -5.5998 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398994406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:39 Heat of formation + Delta-G solvation = -50.515796 kcal Electronic energy + Delta-G solvation = -17027.596221 eV Core-core repulsion = 14215.621788 eV Total energy + Delta-G solvation = -2811.974432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.60014 -37.36644 -36.80101 -35.50615 -32.84015 -31.19629 -30.60862 -29.69999 -27.67641 -24.80310 -23.17394 -22.80906 -21.64878 -19.21460 -18.37883 -17.21017 -17.10466 -16.53917 -16.29792 -15.75646 -15.56318 -15.46822 -14.97148 -14.82891 -14.53770 -14.10855 -13.80990 -13.66054 -13.48214 -13.36635 -12.92288 -12.76099 -12.72474 -12.53003 -12.40737 -12.11946 -12.03439 -11.47872 -11.25546 -11.13219 -10.98292 -9.43924 -9.34010 -9.17847 -9.15056 -8.62650 -6.32792 0.62481 0.96635 1.15706 1.38296 1.51408 1.52080 1.78430 2.21410 2.69738 2.87921 3.49621 3.83750 3.89627 4.11306 4.29720 4.31233 4.36599 4.52238 4.57180 4.57994 4.64646 4.84507 4.85440 5.07275 5.09466 5.16234 5.17046 5.39694 5.47685 5.72234 5.94332 6.10459 6.15133 6.27338 6.40260 6.42920 6.72200 6.95291 7.05262 8.34232 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.044374 B = 0.002977 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.848175 B = 9403.051615 C = 9688.713612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.486 4.486 2 S 1.306 4.694 3 O -0.931 6.931 4 C -0.443 4.443 5 C 0.072 3.928 6 N -0.687 5.687 7 C 0.127 3.873 8 C -0.202 4.202 9 C -0.082 4.082 10 C -0.190 4.190 11 C 0.079 3.921 12 C -0.504 4.504 13 H 0.072 0.928 14 C 0.035 3.965 15 N -0.823 5.823 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.261 1.261 20 C -0.246 4.246 21 C -0.089 4.089 22 H 0.064 0.936 23 H 0.115 0.885 24 H 0.146 0.854 25 H 0.149 0.851 26 H 0.066 0.934 27 H 0.012 0.988 28 H 0.106 0.894 29 H 0.334 0.666 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.288 0.712 35 H 0.092 0.908 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 2.878 14.770 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 1.505 4.495 3 O -0.927 6.927 4 C -0.580 4.580 5 C -0.058 4.058 6 N -0.318 5.318 7 C -0.001 4.001 8 C -0.203 4.203 9 C -0.101 4.101 10 C -0.210 4.210 11 C 0.077 3.923 12 C -0.533 4.533 13 H 0.090 0.910 14 C -0.180 4.180 15 N -0.449 5.449 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.185 1.185 20 C -0.266 4.266 21 C -0.107 4.107 22 H 0.083 0.917 23 H 0.134 0.866 24 H 0.164 0.836 25 H 0.167 0.833 26 H 0.085 0.915 27 H 0.031 0.969 28 H 0.124 0.876 29 H 0.151 0.849 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.200 2.412 15.764 17.497 hybrid contribution -0.452 1.765 -3.010 3.518 sum -7.652 4.178 12.755 15.449 Atomic orbital electron populations 1.27614 1.19711 1.10182 1.07050 1.69629 0.86520 0.95574 0.97743 1.92992 1.76219 1.40581 1.82916 1.27769 1.01115 1.11889 1.17244 1.21625 0.93576 0.96723 0.93857 1.60672 1.10134 1.56823 1.04172 1.20533 0.87613 0.97505 0.94465 1.19338 1.12859 0.93297 0.94844 1.20759 0.98604 0.94228 0.96492 1.21298 1.08097 0.99280 0.92318 1.17977 0.88727 0.91973 0.93664 1.19830 1.36595 0.97112 0.99770 0.91003 1.26748 0.92958 0.98293 0.99973 1.69878 1.23611 1.13946 1.37469 0.85203 0.78919 0.77842 0.77716 1.18583 1.19094 1.18470 1.21125 1.13445 0.94894 0.97100 1.20670 0.99439 0.97996 0.92620 0.91701 0.86591 0.83575 0.83253 0.91466 0.96937 0.87575 0.84883 0.95538 0.90033 0.87290 0.88105 0.90098 0.89000 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -4.79 10.74 113.37 1.22 -3.57 16 2 S 1.31 17.70 13.80 -56.49 -0.78 16.92 16 3 O -0.93 -27.55 18.14 -148.98 -2.70 -30.26 16 4 C -0.44 -7.69 6.18 71.98 0.45 -7.24 16 5 C 0.07 1.65 5.69 86.30 0.49 2.14 16 6 N -0.69 -20.58 6.49 -517.92 -3.36 -23.94 16 7 C 0.13 4.19 5.80 85.56 0.50 4.68 16 8 C -0.20 -8.50 5.42 -19.67 -0.11 -8.61 16 9 C -0.08 -3.79 9.67 22.22 0.21 -3.58 16 10 C -0.19 -10.16 8.70 22.73 0.20 -9.96 16 11 C 0.08 4.38 5.57 -21.29 -0.12 4.26 16 12 C -0.50 -27.89 9.05 23.46 0.21 -27.67 16 13 H 0.07 3.87 7.91 -2.91 -0.02 3.84 16 14 C 0.04 1.81 5.14 85.26 0.44 2.24 16 15 N -0.82 -43.57 10.95 21.83 0.24 -43.33 16 16 Si 0.98 38.70 29.60 68.60 2.03 40.73 16 17 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 18 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 20 C -0.25 -12.47 9.80 22.73 0.22 -12.25 16 21 C -0.09 -3.94 9.67 22.22 0.21 -3.72 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.15 0.53 8.14 -2.39 -0.02 0.52 16 25 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.33 10.59 8.72 -89.69 -0.78 9.80 16 30 H 0.03 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 32 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 33 H 0.10 5.62 6.15 -2.91 -0.02 5.60 16 34 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 35 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -74.32 320.13 -0.36 -74.69 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.28 Total: 28.47 kcal Atomic # 6 Polarization: -67.21 SS G_CDS: 3.93 Total: -63.28 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -3.12 Total: -67.27 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -2.70 Total: -30.26 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 16 Polarization: 17.70 SS G_CDS: -0.78 Total: 16.92 kcal Total: -74.32 -0.36 -74.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398994406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.173 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds