Wall clock time and date at job start Mon Mar 30 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00379 * 2 1 4 4 H 1.48501 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47082 * 299.99981 * 3 2 1 6 6 H 1.48507 * 109.46830 * 60.00115 * 3 2 1 7 7 C 1.37883 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99479 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.43496 * 57.45674 * 9 7 2 11 11 C 1.54367 * 110.46322 * 294.75709 * 9 7 2 12 12 C 1.53876 * 106.54765 * 217.68762 * 11 9 7 13 13 C 1.54263 * 106.63651 * 0.04097 * 12 11 9 14 14 H 1.09005 * 110.48584 * 264.90184 * 13 12 11 15 15 N 1.46897 * 110.48711 * 142.26535 * 13 12 11 16 16 C 1.46904 * 111.00374 * 86.44874 * 15 13 12 17 17 C 1.52999 * 109.47465 * 179.97438 * 16 15 13 18 18 H 1.08994 * 109.47373 * 305.00404 * 17 16 15 19 19 O 1.42909 * 109.46810 * 65.00079 * 17 16 15 20 20 C 1.52995 * 109.47359 * 184.99901 * 17 16 15 21 21 F 1.39905 * 109.46872 * 59.99867 * 20 17 16 22 22 F 1.39894 * 109.47530 * 180.02562 * 20 17 16 23 23 F 1.39903 * 109.47326 * 300.00554 * 20 17 16 24 24 C 1.54884 * 104.19983 * 23.58277 * 13 12 11 25 25 H 0.97004 * 119.99449 * 0.02562 * 1 2 3 26 26 H 1.09002 * 110.04920 * 98.42359 * 11 9 7 27 27 H 1.09003 * 110.07124 * 336.95993 * 11 9 7 28 28 H 1.09002 * 110.03428 * 240.72988 * 12 11 9 29 29 H 1.08995 * 110.02995 * 119.34836 * 12 11 9 30 30 H 1.00898 * 110.99832 * 322.49909 * 15 13 12 31 31 H 1.09001 * 109.47000 * 300.00403 * 16 15 13 32 32 H 1.09001 * 109.46576 * 59.99986 * 16 15 13 33 33 H 0.96702 * 113.99629 * 60.00441 * 19 17 16 34 34 H 1.09007 * 110.75453 * 80.37494 * 24 13 12 35 35 H 1.08998 * 110.75788 * 203.74013 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.5851 -2.5541 -0.8607 11 6 0.4560 -2.6633 1.3136 12 6 0.5405 -4.1520 1.6939 13 6 1.3838 -4.8399 0.6006 14 1 0.7379 -5.2743 -0.1625 15 7 2.2490 -5.8700 1.1906 16 6 1.5403 -7.1519 1.3028 17 6 2.4717 -8.1974 1.9195 18 1 3.3888 -8.2577 1.3337 19 8 2.7876 -7.8213 3.2616 20 6 1.7775 -9.5608 1.9220 21 9 1.4681 -9.9289 0.6081 22 9 2.6288 -10.5166 2.4864 23 9 0.6003 -9.4834 2.6739 24 6 2.2363 -3.6942 0.0011 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5841 -2.3759 1.1593 27 1 0.9003 -2.0516 2.0988 28 1 -0.4584 -4.5870 1.7240 29 1 1.0250 -4.2625 2.6640 30 1 2.6043 -5.5736 2.0873 31 1 0.6625 -7.0274 1.9370 32 1 1.2288 -7.4827 0.3120 33 1 2.0171 -7.7483 3.8413 34 1 3.0990 -3.4832 0.6331 35 1 2.5501 -3.9366 -1.0142 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576150152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:17 Heat of formation + Delta-G solvation = -223.120547 kcal Electronic energy + Delta-G solvation = -20801.017715 eV Core-core repulsion = 16996.948967 eV Total energy + Delta-G solvation = -3804.068747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.40974 -47.93176 -47.87868 -38.63588 -37.33445 -34.21226 -32.17266 -30.17850 -28.08519 -26.90333 -24.70887 -23.35704 -22.30537 -19.77911 -19.11487 -18.92469 -18.82488 -18.50624 -16.51578 -16.10860 -16.03692 -15.09129 -14.72722 -14.64792 -14.56642 -14.32320 -14.23605 -14.04776 -14.03414 -13.77606 -13.36120 -13.00079 -12.42116 -12.30776 -11.73208 -11.66701 -11.20723 -11.00378 -10.86876 -10.66876 -10.45545 -10.15462 -9.90815 -9.57731 -9.14248 -8.73258 -8.37797 -8.18197 -6.00199 -4.02338 2.33701 3.30278 3.31271 3.38635 3.40588 3.42846 3.66167 4.11173 4.39948 4.46338 4.55586 4.76228 5.29869 5.30657 5.40437 5.52558 5.62053 5.80103 6.13773 6.41215 6.58108 6.68423 6.78261 6.89278 6.97774 7.07044 7.31550 7.37998 7.55617 7.70063 7.90146 8.02997 8.47989 9.01452 9.61879 11.09770 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.050568 B = 0.003517 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.580086 B = 7960.331212 C = 8040.535750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.046 3.954 10 H 0.030 0.970 11 C -0.095 4.095 12 C -0.153 4.153 13 C 0.080 3.920 14 H 0.074 0.926 15 N -0.674 5.674 16 C 0.024 3.976 17 C 0.075 3.925 18 H 0.151 0.849 19 O -0.529 6.529 20 C 0.420 3.580 21 F -0.178 7.178 22 F -0.178 7.178 23 F -0.185 7.185 24 C -0.099 4.099 25 H 0.258 0.742 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.347 0.653 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.384 0.616 34 H 0.060 0.940 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -17.775 4.951 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.027 3.973 10 H 0.048 0.952 11 C -0.133 4.133 12 C -0.193 4.193 13 C -0.029 4.029 14 H 0.092 0.908 15 N -0.305 5.305 16 C -0.106 4.106 17 C 0.013 3.987 18 H 0.168 0.832 19 O -0.334 6.334 20 C 0.365 3.635 21 F -0.160 7.160 22 F -0.159 7.159 23 F -0.166 7.166 24 C -0.138 4.138 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.167 0.833 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.233 0.767 34 H 0.078 0.922 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.493 -17.850 4.128 18.490 hybrid contribution -1.046 0.801 1.010 1.660 sum 1.447 -17.049 5.138 17.865 Atomic orbital electron populations 1.69981 1.05904 1.26279 1.50823 1.24993 0.94820 0.99042 0.95193 0.86598 0.80254 0.84025 0.77499 1.19748 1.21100 1.21148 1.21208 0.92886 0.90457 1.50373 0.92535 1.19487 0.92559 0.91783 0.93443 0.95177 1.22058 1.00928 0.90338 1.00018 1.22957 0.98581 1.00112 0.97630 1.22625 0.93397 0.91044 0.95869 0.90756 1.60615 1.37265 1.01924 1.30736 1.22598 0.94557 0.91577 1.01886 1.23327 1.01509 0.87054 0.86822 0.83176 1.86732 1.37318 1.90213 1.19155 1.21723 0.77665 0.90247 0.73850 1.93204 1.93357 1.92990 1.36406 1.93207 1.70326 1.67228 1.85145 1.93180 1.50098 1.96594 1.76766 1.22544 0.98508 0.93948 0.98754 0.93207 0.92879 0.93039 0.93766 0.93311 0.83297 0.93700 0.88963 0.76706 0.92156 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 12.63 55.43 0.70 -24.78 16 2 C 0.06 1.68 5.35 -17.82 -0.10 1.58 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -13.85 8.36 -34.44 -0.29 -14.14 16 8 H 0.06 1.52 7.77 -52.49 -0.41 1.12 16 9 C 0.05 1.12 2.73 -90.06 -0.25 0.87 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.09 -2.13 5.60 -25.56 -0.14 -2.28 16 12 C -0.15 -2.68 6.42 -25.61 -0.16 -2.85 16 13 C 0.08 1.32 3.16 -66.06 -0.21 1.11 16 14 H 0.07 1.22 7.88 -51.93 -0.41 0.81 16 15 N -0.67 -9.14 6.34 -104.98 -0.67 -9.81 16 16 C 0.02 0.26 4.96 -3.82 -0.02 0.24 16 17 C 0.07 0.69 3.21 -26.73 -0.09 0.61 16 18 H 0.15 1.36 8.14 -51.93 -0.42 0.93 16 19 O -0.53 -4.94 12.80 -35.23 -0.45 -5.39 16 20 C 0.42 4.04 2.85 37.16 0.11 4.14 16 21 F -0.18 -1.84 16.71 2.25 0.04 -1.80 16 22 F -0.18 -1.87 17.26 2.25 0.04 -1.83 16 23 F -0.18 -1.82 16.51 2.25 0.04 -1.78 16 24 C -0.10 -1.99 5.96 -24.74 -0.15 -2.14 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.05 1.28 8.06 -51.93 -0.42 0.86 16 27 H 0.05 1.24 7.83 -51.93 -0.41 0.83 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.79 7.57 -51.93 -0.39 0.39 16 30 H 0.35 4.66 7.71 -39.29 -0.30 4.36 16 31 H 0.04 0.47 7.92 -51.93 -0.41 0.06 16 32 H 0.09 0.99 7.60 -51.93 -0.39 0.60 16 33 H 0.38 2.46 8.69 45.56 0.40 2.85 16 34 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -28.64 301.68 -6.06 -34.70 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.99 Total: 2.83 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.29 Total: -12.84 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.03 Total: -34.59 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.45 Total: -5.39 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.41 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.64 -6.06 -34.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576150152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.416 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds