Wall clock time and date at job start Mon Mar 30 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00379 * 2 1 4 4 H 1.48501 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47082 * 299.99981 * 3 2 1 6 6 H 1.48507 * 109.46830 * 60.00115 * 3 2 1 7 7 C 1.37883 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99479 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.43496 * 57.45674 * 9 7 2 11 11 C 1.54367 * 110.46322 * 294.75709 * 9 7 2 12 12 C 1.53876 * 106.54765 * 217.68762 * 11 9 7 13 13 C 1.54263 * 106.63651 * 0.04097 * 12 11 9 14 14 H 1.09005 * 110.48584 * 264.90184 * 13 12 11 15 15 N 1.46897 * 110.48711 * 142.26535 * 13 12 11 16 16 C 1.46904 * 111.00374 * 86.44874 * 15 13 12 17 17 C 1.52999 * 109.47465 * 179.97438 * 16 15 13 18 18 H 1.08994 * 109.47373 * 305.00404 * 17 16 15 19 19 O 1.42909 * 109.46810 * 65.00079 * 17 16 15 20 20 C 1.52995 * 109.47359 * 184.99901 * 17 16 15 21 21 F 1.39905 * 109.46872 * 59.99867 * 20 17 16 22 22 F 1.39894 * 109.47530 * 180.02562 * 20 17 16 23 23 F 1.39903 * 109.47326 * 300.00554 * 20 17 16 24 24 C 1.54884 * 104.19983 * 23.58277 * 13 12 11 25 25 H 0.97004 * 119.99449 * 0.02562 * 1 2 3 26 26 H 1.09002 * 110.04920 * 98.42359 * 11 9 7 27 27 H 1.09003 * 110.07124 * 336.95993 * 11 9 7 28 28 H 1.09002 * 110.03428 * 240.72988 * 12 11 9 29 29 H 1.08995 * 110.02995 * 119.34836 * 12 11 9 30 30 H 1.00898 * 110.99832 * 322.49909 * 15 13 12 31 31 H 1.09001 * 109.47000 * 300.00403 * 16 15 13 32 32 H 1.09001 * 109.46576 * 59.99986 * 16 15 13 33 33 H 0.96702 * 113.99629 * 60.00441 * 19 17 16 34 34 H 1.09007 * 110.75453 * 80.37494 * 24 13 12 35 35 H 1.08998 * 110.75788 * 203.74013 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.5851 -2.5541 -0.8607 11 6 0.4560 -2.6633 1.3136 12 6 0.5405 -4.1520 1.6939 13 6 1.3838 -4.8399 0.6006 14 1 0.7379 -5.2743 -0.1625 15 7 2.2490 -5.8700 1.1906 16 6 1.5403 -7.1519 1.3028 17 6 2.4717 -8.1974 1.9195 18 1 3.3888 -8.2577 1.3337 19 8 2.7876 -7.8213 3.2616 20 6 1.7775 -9.5608 1.9220 21 9 1.4681 -9.9289 0.6081 22 9 2.6288 -10.5166 2.4864 23 9 0.6003 -9.4834 2.6739 24 6 2.2363 -3.6942 0.0011 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5841 -2.3759 1.1593 27 1 0.9003 -2.0516 2.0988 28 1 -0.4584 -4.5870 1.7240 29 1 1.0250 -4.2625 2.6640 30 1 2.6043 -5.5736 2.0873 31 1 0.6625 -7.0274 1.9370 32 1 1.2288 -7.4827 0.3120 33 1 2.0171 -7.7483 3.8413 34 1 3.0990 -3.4832 0.6331 35 1 2.5501 -3.9366 -1.0142 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576150152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:16 Heat of formation + Delta-G solvation = -243.385758 kcal Electronic energy + Delta-G solvation = -20801.896480 eV Core-core repulsion = 16996.948967 eV Total energy + Delta-G solvation = -3804.947513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.17803 -48.69432 -48.66203 -39.76461 -38.48972 -35.61856 -33.94121 -31.21977 -29.78829 -28.34605 -26.09259 -24.88318 -23.10592 -21.18168 -20.92255 -19.70562 -19.62263 -19.28431 -18.33636 -17.22979 -16.88279 -16.56889 -16.30987 -15.57126 -15.49763 -15.40737 -15.10902 -15.07851 -14.81042 -14.77378 -14.50640 -14.21852 -13.93250 -13.73130 -13.39380 -13.00281 -12.71910 -12.47058 -12.34463 -12.32588 -11.95316 -11.57536 -11.48721 -11.33663 -10.90942 -10.73311 -10.46918 -9.32907 -8.10989 -6.19771 1.40447 1.42738 1.53984 1.57192 2.44474 2.54090 2.69166 2.90222 3.20266 3.40388 3.43417 3.70000 3.94292 4.03272 4.09381 4.28527 4.54513 4.64380 4.73879 4.87453 5.03590 5.05567 5.17652 5.26052 5.42772 5.45736 5.67941 5.92893 5.99743 6.10845 6.34222 6.41579 6.48901 6.92547 7.47827 8.98388 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.050568 B = 0.003517 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.580086 B = 7960.331212 C = 8040.535750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.035 3.965 10 H -0.002 1.002 11 C -0.087 4.087 12 C -0.141 4.141 13 C 0.096 3.904 14 H 0.081 0.919 15 N -0.673 5.673 16 C 0.025 3.975 17 C 0.087 3.913 18 H 0.155 0.845 19 O -0.537 6.537 20 C 0.425 3.575 21 F -0.182 7.182 22 F -0.183 7.183 23 F -0.185 7.185 24 C -0.092 4.092 25 H 0.259 0.741 26 H 0.025 0.975 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.351 0.649 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.397 0.603 34 H 0.055 0.945 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 -18.901 5.623 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.016 3.984 10 H 0.017 0.983 11 C -0.126 4.126 12 C -0.180 4.180 13 C -0.014 4.014 14 H 0.099 0.901 15 N -0.304 5.304 16 C -0.105 4.105 17 C 0.025 3.975 18 H 0.172 0.828 19 O -0.345 6.345 20 C 0.370 3.630 21 F -0.164 7.164 22 F -0.164 7.164 23 F -0.167 7.167 24 C -0.130 4.130 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.171 0.829 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.248 0.752 34 H 0.074 0.926 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.197 -18.995 4.813 19.854 hybrid contribution -1.275 1.133 0.799 1.883 sum 1.922 -17.862 5.612 18.822 Atomic orbital electron populations 1.70102 1.07252 1.27012 1.51797 1.25762 0.95630 1.02407 0.95012 0.85608 0.79243 0.79943 0.77496 1.19017 1.20762 1.20756 1.21600 0.92994 0.92096 1.49987 0.92893 1.19491 0.93171 0.92750 0.93023 0.98336 1.21836 0.98519 0.93813 0.98419 1.22843 1.00165 0.96212 0.98825 1.22304 0.92684 0.90774 0.95630 0.90118 1.60451 1.36834 1.02063 1.31062 1.22633 0.94951 0.90344 1.02571 1.23158 1.01166 0.86252 0.86923 0.82754 1.86719 1.38432 1.90082 1.19232 1.21710 0.77500 0.90178 0.73573 1.93200 1.93382 1.93054 1.36726 1.93199 1.70526 1.67469 1.85223 1.93182 1.50152 1.96582 1.76764 1.22363 0.97717 0.93707 0.99188 0.93229 0.95582 0.95355 0.92051 0.91400 0.82887 0.92705 0.88662 0.75189 0.92576 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.97 12.63 21.45 0.27 -53.70 16 2 C 0.01 0.57 5.35 84.66 0.45 1.02 16 3 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.53 -29.16 8.36 25.60 0.21 -28.95 16 8 H 0.05 2.88 7.77 -2.91 -0.02 2.86 16 9 C 0.03 1.71 2.73 -10.43 -0.03 1.68 16 10 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 11 C -0.09 -3.97 5.60 31.35 0.18 -3.80 16 12 C -0.14 -4.68 6.42 31.32 0.20 -4.48 16 13 C 0.10 2.98 3.16 45.99 0.15 3.13 16 14 H 0.08 2.45 7.88 -2.38 -0.02 2.43 16 15 N -0.67 -16.37 6.34 -486.04 -3.08 -19.45 16 16 C 0.02 0.46 4.96 86.30 0.43 0.89 16 17 C 0.09 1.37 3.21 30.59 0.10 1.47 16 18 H 0.16 2.36 8.14 -2.39 -0.02 2.34 16 19 O -0.54 -8.48 12.80 -148.98 -1.91 -10.39 16 20 C 0.43 7.16 2.85 71.98 0.21 7.36 16 21 F -0.18 -3.37 16.71 44.97 0.75 -2.61 16 22 F -0.18 -3.47 17.26 44.97 0.78 -2.70 16 23 F -0.19 -3.18 16.51 44.97 0.74 -2.44 16 24 C -0.09 -3.61 5.96 31.88 0.19 -3.42 16 25 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 26 H 0.03 1.28 8.06 -2.39 -0.02 1.26 16 27 H 0.03 1.38 7.83 -2.39 -0.02 1.36 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 2.00 7.57 -2.39 -0.02 1.99 16 30 H 0.35 8.34 7.71 -89.70 -0.69 7.65 16 31 H 0.05 0.94 7.92 -2.39 -0.02 0.93 16 32 H 0.10 1.76 7.60 -2.39 -0.02 1.74 16 33 H 0.40 3.87 8.69 -74.06 -0.64 3.23 16 34 H 0.06 2.24 8.05 -2.38 -0.02 2.22 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -61.85 301.68 1.44 -60.41 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -0.22 Total: 10.12 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 2.08 Total: -25.09 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -2.81 Total: -73.14 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.91 Total: -10.39 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 2.27 Total: -7.75 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -61.85 1.44 -60.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576150152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.978 kcal (2) G-P(sol) polarization free energy of solvation -61.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds