Wall clock time and date at job start Mon Mar 30 2020 04:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47267 * 2 1 4 4 C 1.50699 * 109.47147 * 239.99727 * 2 1 3 5 5 H 1.08001 * 120.00465 * 275.02200 * 4 2 1 6 6 C 1.37884 * 119.99849 * 95.02370 * 4 2 1 7 7 N 1.31507 * 119.99786 * 184.87566 * 6 4 2 8 8 Si 1.86796 * 119.99826 * 4.87866 * 6 4 2 9 9 H 1.48506 * 109.47274 * 84.75929 * 8 6 4 10 10 H 1.48506 * 109.46998 * 204.75839 * 8 6 4 11 11 H 1.48503 * 109.47510 * 324.75892 * 8 6 4 12 12 N 1.46900 * 109.47045 * 119.99589 * 2 1 3 13 13 C 1.46901 * 110.99924 * 176.04412 * 12 2 1 14 14 C 1.39184 * 111.00324 * 300.00289 * 12 2 1 15 15 C 1.39643 * 120.83005 * 299.99683 * 14 12 2 16 16 C 1.37750 * 119.19153 * 179.97438 * 15 14 12 17 17 N 1.32087 * 120.91276 * 0.02562 * 16 15 14 18 18 C 1.32374 * 121.82939 * 359.97438 * 17 16 15 19 19 O 1.35683 * 119.64449 * 180.02562 * 18 17 16 20 20 C 1.38602 * 120.70847 * 0.02562 * 18 17 16 21 21 N 1.48027 * 120.48690 * 179.97438 * 20 18 17 22 22 O 1.21802 * 119.99890 * 270.02331 * 21 20 18 23 23 O 1.21796 * 119.99724 * 90.02230 * 21 20 18 24 24 H 1.09004 * 109.47215 * 295.28195 * 1 2 3 25 25 H 1.08995 * 109.47649 * 55.29007 * 1 2 3 26 26 H 1.09007 * 109.47004 * 175.29093 * 1 2 3 27 27 H 0.97003 * 119.99938 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47393 * 183.95524 * 13 12 2 29 29 H 1.09004 * 109.47506 * 303.96043 * 13 12 2 30 30 H 1.09003 * 109.47000 * 63.95557 * 13 12 2 31 31 H 1.08004 * 120.40704 * 359.70955 * 15 14 12 32 32 H 1.07998 * 119.54636 * 180.02562 * 16 15 14 33 33 H 0.96705 * 113.99645 * 269.97937 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1351 -1.7856 -1.2291 6 6 2.3607 0.0121 -2.3579 7 7 2.7071 -0.6131 -3.4618 8 14 2.3135 1.8790 -2.3173 9 1 3.5981 2.3951 -1.7797 10 1 2.1082 2.3990 -3.6931 11 1 1.1969 2.3273 -1.4469 12 7 2.0196 -0.6924 1.1995 13 6 3.4850 -0.7945 1.1871 14 6 1.5733 -0.0613 2.3570 15 6 1.9039 1.2699 2.6192 16 6 1.4435 1.8613 3.7749 17 7 0.6983 1.1870 4.6319 18 6 0.3621 -0.0760 4.4218 19 8 -0.4060 -0.7264 5.3318 20 6 0.7863 -0.7411 3.2822 21 7 0.4079 -2.1537 3.0524 22 8 1.1213 -3.0502 3.4658 23 8 -0.6167 -2.4193 2.4499 24 1 -0.3634 0.4389 0.9293 25 1 -0.3634 0.5851 -0.8447 26 1 -0.3633 -1.0243 -0.0844 27 1 2.9378 -0.1048 -4.2551 28 1 3.8164 -1.3721 2.0501 29 1 3.8070 -1.2915 0.2719 30 1 3.9192 0.2044 1.2300 31 1 2.5166 1.8276 1.9264 32 1 1.6954 2.8907 3.9832 33 1 0.0992 -1.1797 6.0206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695533550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:34 Heat of formation + Delta-G solvation = -12.309384 kcal Electronic energy + Delta-G solvation = -21181.581279 eV Core-core repulsion = 17824.970387 eV Total energy + Delta-G solvation = -3356.610893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.38350 -41.88166 -39.78871 -38.07690 -37.56844 -35.08703 -33.40722 -32.32080 -31.59178 -28.20822 -27.41535 -26.45424 -24.58491 -23.95975 -21.92972 -20.52657 -19.94998 -19.74515 -19.56304 -18.85231 -17.70947 -17.37323 -16.99718 -16.47529 -15.87939 -15.69123 -15.12170 -14.64221 -14.53687 -14.44144 -13.87365 -13.39206 -13.26810 -13.02599 -12.81844 -12.74180 -12.50321 -12.44115 -12.36824 -12.23117 -11.88935 -11.46976 -11.23832 -11.13952 -10.83046 -10.55090 -9.66413 -8.35966 -6.43926 -0.78203 -0.58457 -0.51839 0.28591 1.28730 1.33015 1.42538 1.86246 2.06466 2.26889 2.53879 3.00230 3.26256 3.35553 3.57461 3.78953 4.04188 4.20921 4.30685 4.39394 4.51833 4.57806 4.71131 4.82639 4.91128 5.06846 5.16998 5.24257 5.46750 5.69770 5.98860 6.03953 6.31655 6.39566 6.43601 6.64042 7.21217 8.80236 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.007331 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.803297 B = 3818.338842 C = 4357.279851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.196 3.804 3 H 0.031 0.969 4 C -0.511 4.511 5 H 0.031 0.969 6 C 0.022 3.978 7 N -0.937 5.937 8 Si 0.935 3.065 9 H -0.252 1.252 10 H -0.287 1.287 11 H -0.243 1.243 12 N -0.540 5.540 13 C 0.046 3.954 14 C 0.207 3.793 15 C -0.208 4.208 16 C 0.187 3.813 17 N -0.495 5.495 18 C 0.377 3.623 19 O -0.481 6.481 20 C -0.112 4.112 21 N 0.049 4.951 22 O -0.140 6.140 23 O -0.174 6.174 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.270 0.730 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.176 0.824 32 H 0.231 0.769 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.576 8.792 16.752 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.092 3.908 3 H 0.048 0.952 4 C -0.549 4.549 5 H 0.049 0.951 6 C -0.177 4.177 7 N -0.576 5.576 8 Si 0.757 3.243 9 H -0.176 1.176 10 H -0.213 1.213 11 H -0.166 1.166 12 N -0.263 5.263 13 C -0.099 4.099 14 C 0.103 3.897 15 C -0.230 4.230 16 C 0.031 3.969 17 N -0.215 5.215 18 C 0.195 3.805 19 O -0.293 6.293 20 C -0.198 4.198 21 N 0.577 4.423 22 O -0.367 6.367 23 O -0.391 6.391 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.247 0.753 33 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -0.160 9.608 17.085 19.602 hybrid contribution 0.722 -0.279 -1.262 1.481 sum 0.562 9.328 15.823 18.377 Atomic orbital electron populations 1.21912 0.96793 1.00849 0.99367 1.19719 0.92713 0.92367 0.85988 0.95174 1.20795 1.44234 0.93905 0.95978 0.95069 1.25864 0.93651 1.03794 0.94414 1.70033 1.46556 1.38327 1.02661 0.85931 0.80586 0.79498 0.78279 1.17645 1.21315 1.16645 1.59726 1.13677 1.52723 1.00222 1.22273 0.82988 1.01507 1.03136 1.19169 0.89114 0.91684 0.89750 1.23164 1.04666 0.93741 1.01445 1.23567 0.86130 1.01162 0.86007 1.67809 1.14983 1.05187 1.33543 1.18593 0.87388 0.88104 0.86390 1.84783 1.33818 1.68679 1.42003 1.22551 1.10912 0.83242 1.03137 1.43175 0.99041 1.02934 0.97135 1.94460 1.49611 1.41177 1.51450 1.94562 1.14999 1.89703 1.39853 0.94634 0.92427 0.94237 0.92103 0.91033 0.90991 0.93051 0.80674 0.75262 0.70451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 9.14 71.98 0.66 -4.94 16 2 C 0.20 8.51 1.51 44.17 0.07 8.57 16 3 H 0.03 1.21 4.35 -2.39 -0.01 1.20 16 4 C -0.51 -27.49 7.39 25.60 0.19 -27.30 16 5 H 0.03 1.96 8.05 -2.91 -0.02 1.94 16 6 C 0.02 1.20 5.47 84.66 0.46 1.66 16 7 N -0.94 -55.48 13.96 21.45 0.30 -55.18 16 8 Si 0.93 39.11 26.99 68.60 1.85 40.96 16 9 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 10 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.24 -9.23 6.82 99.48 0.68 -8.55 16 12 N -0.54 -21.16 4.40 -699.68 -3.08 -24.23 16 13 C 0.05 1.62 9.12 127.69 1.17 2.79 16 14 C 0.21 6.61 3.24 38.54 0.12 6.74 16 15 C -0.21 -4.73 8.67 22.49 0.20 -4.53 16 16 C 0.19 3.20 11.17 84.54 0.94 4.14 16 17 N -0.49 -11.11 10.39 -309.20 -3.21 -14.32 16 18 C 0.38 10.07 7.74 84.70 0.66 10.73 16 19 O -0.48 -11.39 13.32 -90.01 -1.20 -12.59 16 20 C -0.11 -3.65 6.22 36.69 0.23 -3.42 16 21 N 0.05 1.87 3.88 -45.70 -0.18 1.69 16 22 O -0.14 -5.26 19.26 18.88 0.36 -4.90 16 23 O -0.17 -7.42 19.25 18.89 0.36 -7.05 16 24 H 0.03 1.36 7.06 -2.38 -0.02 1.34 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.07 3.00 6.82 -2.38 -0.02 2.98 16 30 H 0.05 1.51 7.41 -2.39 -0.02 1.49 16 31 H 0.18 3.36 7.17 -2.91 -0.02 3.33 16 32 H 0.23 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.43 5.63 9.06 -74.05 -0.67 4.96 16 Total: -1.00 -71.32 292.86 0.37 -70.95 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.46 Total: 10.25 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.69 Total: -5.57 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -6.17 Total: -92.05 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.47 Total: -24.54 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.85 Total: 40.96 kcal Total: -71.32 0.37 -70.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695533550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.639 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds