Wall clock time and date at job start Mon Mar 30 2020 04:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00066 * 2 1 4 4 H 1.48509 * 109.47206 * 269.99899 * 3 2 1 5 5 H 1.48495 * 109.47418 * 30.00116 * 3 2 1 6 6 H 1.48504 * 109.47329 * 150.00083 * 3 2 1 7 7 C 1.37884 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99893 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99784 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47272 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47476 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00545 * 180.02562 * 12 11 10 14 14 O 1.21609 * 119.99535 * 359.97438 * 13 12 11 15 15 C 1.47323 * 120.00227 * 179.97438 * 13 12 11 16 16 C 1.39921 * 120.92598 * 0.02562 * 15 13 12 17 17 N 1.32056 * 119.04695 * 179.73032 * 16 15 13 18 18 C 1.32539 * 121.08229 * 0.50642 * 17 16 15 19 19 O 1.35292 * 118.97296 * 179.75433 * 18 17 16 20 20 N 1.32321 * 122.06160 * 359.47906 * 18 17 16 21 21 C 1.32639 * 120.82176 * 0.25412 * 20 18 17 22 22 O 1.35281 * 120.58118 * 179.97438 * 21 20 18 23 23 H 0.96996 * 119.99692 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46820 * 60.00171 * 9 7 2 25 25 H 1.08997 * 109.47161 * 300.00181 * 9 7 2 26 26 H 1.09007 * 109.46677 * 60.00177 * 10 9 7 27 27 H 1.09001 * 109.47226 * 300.00626 * 10 9 7 28 28 H 1.09001 * 109.47248 * 59.99953 * 11 10 9 29 29 H 1.09010 * 109.47182 * 300.00341 * 11 10 9 30 30 H 0.97007 * 119.99545 * 359.97438 * 12 11 10 31 31 H 1.07997 * 120.47829 * 359.97438 * 16 15 13 32 32 H 0.96700 * 114.00323 * 269.73356 * 19 18 17 33 33 H 0.96690 * 113.99846 * 90.00076 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0014 11 6 5.5515 -2.6367 0.0014 12 7 6.0399 -4.0178 0.0022 13 6 7.3649 -4.2642 0.0029 14 8 8.1552 -3.3398 0.0024 15 6 7.8560 -5.6532 0.0042 16 6 6.9640 -6.7312 0.0042 17 7 7.4448 -7.9612 -0.0001 18 6 8.7511 -8.1853 0.0057 19 8 9.1969 -9.4626 0.0061 20 7 9.6330 -7.1988 0.0058 21 6 9.2367 -5.9330 0.0050 22 8 10.1426 -4.9282 0.0056 23 1 -0.4849 0.8400 -0.0004 24 1 3.8752 -0.6797 0.8894 25 1 3.8745 -0.6809 -0.8905 26 1 3.6578 -3.1514 -0.8880 27 1 3.6585 -3.1495 0.8920 28 1 5.9148 -2.1220 0.8909 29 1 5.9149 -2.1236 -0.8891 30 1 5.4094 -4.7551 0.0029 31 1 5.8977 -6.5599 0.0036 32 1 9.3262 -9.8338 0.8896 33 1 10.4068 -4.6364 -0.8776 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700872528.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:09 Heat of formation + Delta-G solvation = -100.827956 kcal Electronic energy + Delta-G solvation = -19159.357894 eV Core-core repulsion = 15798.908548 eV Total energy + Delta-G solvation = -3360.449346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.64238 -40.59884 -39.18847 -38.02009 -36.94876 -35.20740 -34.60850 -33.47870 -32.17919 -28.94258 -26.18972 -25.59416 -24.38719 -22.30898 -21.81731 -20.88188 -19.82270 -19.21862 -18.97617 -18.58536 -17.10847 -16.89491 -16.73966 -16.46780 -16.17893 -15.52005 -15.35233 -15.05757 -14.75314 -14.31987 -13.78499 -13.61859 -13.59958 -13.20755 -12.71421 -12.66892 -12.56011 -11.99531 -11.90121 -11.76212 -11.55214 -11.29401 -11.01744 -10.74529 -10.73487 -10.55412 -10.09642 -8.26887 -6.30397 -0.94130 -0.34739 1.39102 1.41229 1.52304 1.54797 1.68782 2.00279 2.24739 2.38651 2.50610 3.06662 3.09475 3.49315 3.61777 3.82318 4.14509 4.25512 4.26258 4.54815 4.77567 4.93420 4.94020 5.08523 5.33723 5.41491 5.53796 5.60946 5.68474 6.30418 6.33360 6.39576 6.43769 6.62352 6.78681 7.08870 7.34642 8.89533 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.040567 B = 0.003233 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.055045 B = 8657.287606 C = 9316.496781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.014 4.014 10 C -0.103 4.103 11 C 0.128 3.872 12 N -0.707 5.707 13 C 0.570 3.430 14 O -0.557 6.557 15 C -0.276 4.276 16 C 0.236 3.764 17 N -0.540 5.540 18 C 0.541 3.459 19 O -0.459 6.459 20 N -0.571 5.571 21 C 0.438 3.562 22 O -0.465 6.465 23 H 0.265 0.735 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.414 0.586 31 H 0.219 0.781 32 H 0.440 0.560 33 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.657 -16.103 0.047 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.169 1.169 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.052 4.052 10 C -0.140 4.140 11 C 0.004 3.996 12 N -0.359 5.359 13 C 0.355 3.645 14 O -0.436 6.436 15 C -0.285 4.285 16 C 0.070 3.930 17 N -0.267 5.267 18 C 0.238 3.762 19 O -0.267 6.267 20 N -0.309 5.309 21 C 0.250 3.750 22 O -0.276 6.276 23 H 0.074 0.926 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.252 0.748 31 H 0.235 0.765 32 H 0.305 0.695 33 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 19.440 -16.303 0.045 25.371 hybrid contribution -0.519 1.257 0.017 1.360 sum 18.921 -15.046 0.061 24.174 Atomic orbital electron populations 1.70062 1.08277 1.28063 1.52910 1.25988 0.95545 1.03448 0.94361 0.85714 0.79586 0.78568 0.79128 1.19308 1.21396 1.16902 1.21500 0.92041 0.93213 1.49916 0.94265 1.19476 0.93914 0.94894 0.96882 1.21506 0.91933 0.98062 1.02545 1.21375 0.94382 0.81839 1.01955 1.45816 1.06154 1.09951 1.73993 1.17627 0.82744 0.87347 0.76752 1.90827 1.55964 1.46009 1.50769 1.21863 0.95246 0.96447 1.14983 1.23891 1.01899 0.84054 0.83195 1.68168 1.14985 1.25065 1.18502 1.20311 0.83423 0.85739 0.86705 1.84618 1.85936 1.19424 1.36729 1.67596 1.42280 1.00485 1.20574 1.19257 0.86117 0.84915 0.84741 1.84607 1.59867 1.47226 1.35919 0.92605 0.96090 0.96103 0.91293 0.91433 0.92034 0.91682 0.74781 0.76495 0.69473 0.70341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 2 C 0.00 0.18 5.47 84.66 0.46 0.65 16 3 Si 0.95 43.21 27.47 68.60 1.88 45.10 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.38 6.54 99.48 0.65 -9.73 16 7 C -0.53 -28.88 9.66 25.60 0.25 -28.63 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.10 -3.29 5.27 30.59 0.16 -3.13 16 11 C 0.13 3.48 5.67 86.38 0.49 3.97 16 12 N -0.71 -14.76 5.51 -466.48 -2.57 -17.33 16 13 C 0.57 13.43 7.77 86.63 0.67 14.11 16 14 O -0.56 -17.26 15.31 16.22 0.25 -17.02 16 15 C -0.28 -5.26 5.92 -19.83 -0.12 -5.38 16 16 C 0.24 3.39 10.80 85.07 0.92 4.31 16 17 N -0.54 -9.30 10.44 -312.52 -3.26 -12.57 16 18 C 0.54 9.89 8.69 180.50 1.57 11.46 16 19 O -0.46 -6.31 13.63 -85.78 -1.17 -7.48 16 20 N -0.57 -11.99 10.47 -425.62 -4.46 -16.45 16 21 C 0.44 9.24 7.85 85.22 0.67 9.91 16 22 O -0.47 -9.77 11.79 -65.38 -0.77 -10.55 16 23 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 24 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 25 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 26 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.41 5.82 6.59 -92.70 -0.61 5.20 16 31 H 0.22 1.44 6.52 -2.91 -0.02 1.42 16 32 H 0.44 1.20 9.06 -74.06 -0.67 0.53 16 33 H 0.43 5.38 9.06 -74.06 -0.67 4.71 16 Total: -1.00 -77.28 295.34 -5.42 -82.70 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -0.81 Total: 4.99 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 5.19 Total: 6.81 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -9.99 Total: -104.56 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.69 Total: -35.04 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.10 kcal Total: -77.28 -5.42 -82.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872528.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.126 kcal (2) G-P(sol) polarization free energy of solvation -77.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds