Wall clock time and date at job start Mon Mar 30 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47276 * 2 1 4 4 C 1.50693 * 109.47080 * 239.99709 * 2 1 3 5 5 H 1.08001 * 119.99706 * 239.99629 * 4 2 1 6 6 C 1.37872 * 120.00230 * 60.00505 * 4 2 1 7 7 N 1.31513 * 119.99986 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00066 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47213 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47541 * 119.99815 * 8 6 4 11 11 H 1.48504 * 109.47064 * 239.99335 * 8 6 4 12 12 N 1.46500 * 109.46827 * 119.99365 * 2 1 3 13 13 C 1.46500 * 119.99884 * 60.00555 * 12 2 1 14 14 C 1.34779 * 120.00321 * 239.99642 * 12 2 1 15 15 O 1.21612 * 119.99905 * 4.76167 * 14 12 2 16 16 C 1.47328 * 120.00269 * 184.75929 * 14 12 2 17 17 C 1.39917 * 120.92300 * 315.20244 * 16 14 12 18 18 N 1.32062 * 119.04378 * 179.76345 * 17 16 14 19 19 C 1.32540 * 121.08170 * 0.52182 * 18 17 16 20 20 O 1.35291 * 118.96627 * 179.70261 * 19 18 17 21 21 N 1.32315 * 122.06208 * 359.72783 * 19 18 17 22 22 C 1.32637 * 120.82294 * 0.02562 * 21 19 18 23 23 O 1.35275 * 120.57947 * 180.02562 * 22 21 19 24 24 H 1.09005 * 109.47192 * 59.99846 * 1 2 3 25 25 H 1.08994 * 109.47205 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47092 * 300.00534 * 1 2 3 27 27 H 0.96998 * 119.99968 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47051 * 275.18844 * 13 12 2 29 29 H 1.08999 * 109.47323 * 155.19187 * 13 12 2 30 30 H 1.08997 * 109.47283 * 35.18321 * 13 12 2 31 31 H 1.08002 * 120.47883 * 0.02562 * 17 16 14 32 32 H 0.96701 * 114.00595 * 270.01956 * 20 19 18 33 33 H 0.96699 * 113.99925 * 269.97244 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1464 -2.2873 -3.6035 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 7 2.0182 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0159 1.1510 1.9366 16 6 3.3704 -0.7568 3.2310 17 6 2.5948 -1.6421 3.9877 18 7 3.1514 -2.2727 5.0059 19 6 4.4223 -2.0712 5.3235 20 8 4.9471 -2.7354 6.3788 21 7 5.1936 -1.2404 4.6412 22 6 4.7168 -0.5697 3.6010 23 8 5.5099 0.2781 2.9065 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7083 1.1607 -3.4844 28 1 0.6922 -2.1463 1.9182 29 1 2.4177 -2.5575 2.0644 30 1 1.6197 -2.6190 0.4745 31 1 1.5572 -1.8106 3.7400 32 1 4.8609 -2.2674 7.2207 33 1 5.5022 1.1858 3.2397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700873252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:47 Heat of formation + Delta-G solvation = -45.477851 kcal Electronic energy + Delta-G solvation = -20485.633610 eV Core-core repulsion = 17127.584425 eV Total energy + Delta-G solvation = -3358.049185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.54426 -39.18755 -38.09440 -37.01353 -35.45532 -33.63620 -32.95106 -31.27537 -29.13562 -26.53814 -25.30916 -24.77366 -24.40590 -21.61709 -19.97663 -19.10237 -18.65899 -17.77562 -16.97231 -16.76337 -16.17995 -15.60931 -14.89233 -14.77943 -14.47843 -14.21561 -13.42833 -13.31109 -12.64979 -12.61656 -12.47567 -12.14091 -11.82003 -11.59953 -11.36407 -11.12693 -10.89928 -10.81357 -10.78500 -10.32048 -10.23615 -9.54630 -9.47364 -9.29985 -9.16314 -8.49738 -7.77623 -6.14047 -4.22323 0.30429 0.71971 2.53973 3.06059 3.23137 3.30364 3.32493 3.37159 3.48957 3.77654 4.15341 4.34390 4.61591 4.80329 4.92659 5.18092 5.32633 5.50783 5.78547 5.83268 6.24481 6.43585 6.66802 6.72901 6.95359 7.11730 7.23927 7.31618 7.40420 7.63291 7.69336 7.91874 8.08532 8.33246 8.66157 8.85584 9.44447 10.91355 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029855 B = 0.005099 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.646123 B = 5490.326092 C = 5593.196518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.579 5.579 13 C 0.072 3.928 14 C 0.562 3.438 15 O -0.538 6.538 16 C -0.249 4.249 17 C 0.210 3.790 18 N -0.533 5.533 19 C 0.524 3.476 20 O -0.456 6.456 21 N -0.551 5.551 22 C 0.430 3.570 23 O -0.458 6.458 24 H 0.095 0.905 25 H 0.031 0.969 26 H 0.013 0.987 27 H 0.264 0.736 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.188 0.812 32 H 0.413 0.587 33 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -4.154 14.308 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.309 5.309 13 C -0.072 4.072 14 C 0.346 3.654 15 O -0.417 6.417 16 C -0.258 4.258 17 C 0.045 3.955 18 N -0.260 5.260 19 C 0.220 3.780 20 O -0.259 6.259 21 N -0.288 5.288 22 C 0.241 3.759 23 O -0.267 6.267 24 H 0.114 0.886 25 H 0.050 0.950 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.204 0.796 32 H 0.273 0.727 33 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 2.821 -4.784 14.114 15.168 hybrid contribution -0.042 0.485 -0.925 1.045 sum 2.779 -4.300 13.189 14.148 Atomic orbital electron populations 1.22089 0.97792 0.99595 1.01038 1.19048 0.91127 0.94530 0.79364 0.91594 1.21323 1.32029 1.13193 0.90170 0.92107 1.24872 0.94826 0.94940 0.98986 1.69879 1.36192 1.22546 1.23804 0.86425 0.78624 0.79631 0.82641 1.19791 1.20867 1.20839 1.48209 1.47871 1.11600 1.23181 1.21913 0.98664 0.83428 1.03145 1.17414 0.79680 0.86625 0.81654 1.90753 1.61038 1.14608 1.75260 1.22261 0.95777 1.04939 1.02835 1.23525 1.00407 0.85596 0.86008 1.68012 1.12316 1.26089 1.19557 1.20007 0.83663 0.85439 0.88914 1.84674 1.79480 1.44643 1.17107 1.67451 1.40703 1.10993 1.09622 1.19005 0.84826 0.87931 0.84110 1.84630 1.65917 1.23389 1.52724 0.88640 0.94985 0.96826 0.92634 0.92873 0.92807 0.89565 0.79557 0.72664 0.71995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.97 37.16 0.33 -2.99 16 2 C 0.26 6.32 2.63 -69.09 -0.18 6.14 16 3 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 4 C -0.53 -13.87 8.03 -34.45 -0.28 -14.14 16 5 H 0.06 1.59 7.25 -52.49 -0.38 1.21 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.58 -11.73 2.75 -176.57 -0.49 -12.22 16 13 C 0.07 1.15 8.06 59.85 0.48 1.63 16 14 C 0.56 11.12 7.11 -12.56 -0.09 11.03 16 15 O -0.54 -12.28 15.78 -5.18 -0.08 -12.36 16 16 C -0.25 -3.95 5.09 -104.57 -0.53 -4.49 16 17 C 0.21 2.77 8.76 -16.82 -0.15 2.62 16 18 N -0.53 -7.06 10.44 -14.44 -0.15 -7.21 16 19 C 0.52 6.98 8.69 -91.06 -0.79 6.19 16 20 O -0.46 -4.79 13.63 -17.57 -0.24 -5.03 16 21 N -0.55 -8.15 10.47 -14.47 -0.15 -8.30 16 22 C 0.43 6.73 7.82 -16.21 -0.13 6.60 16 23 O -0.46 -7.04 12.62 -27.97 -0.35 -7.40 16 24 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 25 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.05 0.69 7.61 -51.93 -0.40 0.30 16 29 H 0.05 0.76 5.31 -51.93 -0.28 0.48 16 30 H 0.09 1.47 6.96 -51.93 -0.36 1.11 16 31 H 0.19 2.01 6.27 -52.49 -0.33 1.68 16 32 H 0.41 1.93 9.06 45.56 0.41 2.34 16 33 H 0.42 4.52 9.06 45.56 0.41 4.93 16 LS Contribution 286.96 15.07 4.32 4.32 Total: -1.00 -33.18 286.96 -4.50 -37.68 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -1.55 Total: 4.30 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: -1.43 Total: 14.27 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.16 Total: -51.45 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.67 Total: -24.79 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.18 -4.50 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700873252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.794 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds