Wall clock time and date at job start Mon Mar 30 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47276 * 2 1 4 4 C 1.50693 * 109.47080 * 239.99709 * 2 1 3 5 5 H 1.08001 * 119.99706 * 239.99629 * 4 2 1 6 6 C 1.37872 * 120.00230 * 60.00505 * 4 2 1 7 7 N 1.31513 * 119.99986 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00066 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47213 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47541 * 119.99815 * 8 6 4 11 11 H 1.48504 * 109.47064 * 239.99335 * 8 6 4 12 12 N 1.46500 * 109.46827 * 119.99365 * 2 1 3 13 13 C 1.46500 * 119.99884 * 60.00555 * 12 2 1 14 14 C 1.34779 * 120.00321 * 239.99642 * 12 2 1 15 15 O 1.21612 * 119.99905 * 4.76167 * 14 12 2 16 16 C 1.47328 * 120.00269 * 184.75929 * 14 12 2 17 17 C 1.39917 * 120.92300 * 315.20244 * 16 14 12 18 18 N 1.32062 * 119.04378 * 179.76345 * 17 16 14 19 19 C 1.32540 * 121.08170 * 0.52182 * 18 17 16 20 20 O 1.35291 * 118.96627 * 179.70261 * 19 18 17 21 21 N 1.32315 * 122.06208 * 359.72783 * 19 18 17 22 22 C 1.32637 * 120.82294 * 0.02562 * 21 19 18 23 23 O 1.35275 * 120.57947 * 180.02562 * 22 21 19 24 24 H 1.09005 * 109.47192 * 59.99846 * 1 2 3 25 25 H 1.08994 * 109.47205 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47092 * 300.00534 * 1 2 3 27 27 H 0.96998 * 119.99968 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47051 * 275.18844 * 13 12 2 29 29 H 1.08999 * 109.47323 * 155.19187 * 13 12 2 30 30 H 1.08997 * 109.47283 * 35.18321 * 13 12 2 31 31 H 1.08002 * 120.47883 * 0.02562 * 17 16 14 32 32 H 0.96701 * 114.00595 * 270.01956 * 20 19 18 33 33 H 0.96699 * 113.99925 * 269.97244 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1464 -2.2873 -3.6035 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 7 2.0182 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0159 1.1510 1.9366 16 6 3.3704 -0.7568 3.2310 17 6 2.5948 -1.6421 3.9877 18 7 3.1514 -2.2727 5.0059 19 6 4.4223 -2.0712 5.3235 20 8 4.9471 -2.7354 6.3788 21 7 5.1936 -1.2404 4.6412 22 6 4.7168 -0.5697 3.6010 23 8 5.5099 0.2781 2.9065 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7083 1.1607 -3.4844 28 1 0.6922 -2.1463 1.9182 29 1 2.4177 -2.5575 2.0644 30 1 1.6197 -2.6190 0.4745 31 1 1.5572 -1.8106 3.7400 32 1 4.8609 -2.2674 7.2207 33 1 5.5022 1.1858 3.2397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700873252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:47 Heat of formation + Delta-G solvation = -77.322030 kcal Electronic energy + Delta-G solvation = -20487.014477 eV Core-core repulsion = 17127.584425 eV Total energy + Delta-G solvation = -3359.430052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.67272 -40.61325 -39.24314 -38.02531 -37.14117 -35.05492 -34.46110 -32.68195 -30.78549 -27.90562 -27.29168 -25.97792 -25.53829 -23.24449 -20.99508 -20.67531 -19.77937 -18.85848 -18.59724 -18.13833 -17.62792 -17.30591 -16.37022 -16.05953 -15.75169 -15.65459 -14.98852 -14.43859 -14.37421 -13.89860 -13.69977 -13.55063 -13.17600 -13.09910 -12.93658 -12.71435 -12.65587 -12.51133 -12.18528 -12.11619 -11.88865 -11.18546 -10.94130 -10.60760 -10.55315 -10.44869 -9.41522 -8.15134 -6.30790 -0.80579 -0.35985 1.40795 1.42613 1.46861 1.54329 1.76273 2.08020 2.37092 2.40570 2.46180 3.10046 3.13780 3.39041 3.68634 3.83531 4.25235 4.31042 4.64983 4.77730 4.83300 4.94727 4.98634 5.06871 5.38871 5.49428 5.54680 5.67103 6.02757 6.16103 6.28905 6.44200 6.61846 6.67564 6.75559 7.17497 7.41587 8.89293 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029855 B = 0.005099 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.646123 B = 5490.326092 C = 5593.196518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.016 0.984 4 C -0.540 4.540 5 H 0.058 0.942 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.586 5.586 13 C 0.069 3.931 14 C 0.560 3.440 15 O -0.580 6.580 16 C -0.267 4.267 17 C 0.232 3.768 18 N -0.532 5.532 19 C 0.534 3.466 20 O -0.455 6.455 21 N -0.563 5.563 22 C 0.429 3.571 23 O -0.476 6.476 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.027 0.973 27 H 0.265 0.735 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.215 0.785 32 H 0.439 0.561 33 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -6.206 15.587 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.162 3.838 3 H 0.034 0.966 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.193 1.193 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.316 5.316 13 C -0.073 4.073 14 C 0.347 3.653 15 O -0.462 6.462 16 C -0.276 4.276 17 C 0.066 3.934 18 N -0.258 5.258 19 C 0.231 3.769 20 O -0.263 6.263 21 N -0.301 5.301 22 C 0.241 3.759 23 O -0.287 6.287 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.231 0.769 32 H 0.304 0.696 33 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 2.648 -6.860 15.457 17.117 hybrid contribution 0.073 1.112 -1.193 1.632 sum 2.722 -5.748 14.264 15.618 Atomic orbital electron populations 1.21870 0.96423 1.00480 1.00335 1.18632 0.92099 0.92291 0.80767 0.96604 1.21571 1.31950 1.13106 0.91195 0.92390 1.25633 0.95037 0.95591 1.01740 1.70007 1.37100 1.23698 1.24405 0.85472 0.78231 0.78463 0.79221 1.19333 1.19854 1.21213 1.48140 1.48108 1.13242 1.22078 1.22159 1.01173 0.80665 1.03335 1.17871 0.78868 0.86281 0.82288 1.90719 1.62246 1.16648 1.76572 1.21866 0.96264 1.06831 1.02657 1.23882 1.01034 0.83749 0.84727 1.68185 1.12178 1.26106 1.19378 1.20262 0.83543 0.84111 0.88972 1.84636 1.79165 1.44679 1.17849 1.67537 1.41042 1.11819 1.09707 1.19094 0.84809 0.87885 0.84141 1.84571 1.66070 1.24603 1.53455 0.91386 0.93121 0.95440 0.92573 0.89319 0.90749 0.90821 0.76880 0.69558 0.70241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.97 71.98 0.65 -5.34 16 2 C 0.26 13.09 2.63 44.24 0.12 13.21 16 3 H 0.02 0.95 6.91 -2.38 -0.02 0.93 16 4 C -0.54 -28.58 8.03 25.60 0.21 -28.37 16 5 H 0.06 3.03 7.25 -2.91 -0.02 3.01 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -51.15 11.32 21.45 0.24 -50.91 16 8 Si 0.96 42.50 29.54 68.60 2.03 44.53 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.59 -23.50 2.75 -830.80 -2.29 -25.78 16 13 C 0.07 2.02 8.06 127.77 1.03 3.05 16 14 C 0.56 22.20 7.11 86.63 0.62 22.82 16 15 O -0.58 -27.41 15.78 5.92 0.09 -27.32 16 16 C -0.27 -8.13 5.09 -19.83 -0.10 -8.23 16 17 C 0.23 5.43 8.76 85.07 0.74 6.18 16 18 N -0.53 -12.33 10.44 -312.52 -3.26 -15.59 16 19 C 0.53 12.75 8.69 180.50 1.57 14.31 16 20 O -0.46 -8.10 13.63 -85.77 -1.17 -9.27 16 21 N -0.56 -15.65 10.47 -425.64 -4.46 -20.11 16 22 C 0.43 13.04 7.82 85.22 0.67 13.70 16 23 O -0.48 -14.71 12.62 -75.61 -0.95 -15.66 16 24 H 0.07 3.47 6.07 -2.38 -0.01 3.45 16 25 H 0.05 2.04 7.67 -2.39 -0.02 2.02 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.09 1.97 7.61 -2.39 -0.02 1.95 16 29 H 0.07 1.87 5.31 -2.39 -0.01 1.86 16 30 H 0.07 2.37 6.96 -2.39 -0.02 2.36 16 31 H 0.21 3.72 6.27 -2.91 -0.02 3.70 16 32 H 0.44 2.56 9.06 -74.06 -0.67 1.89 16 33 H 0.43 9.62 9.06 -74.06 -0.67 8.95 16 Total: -1.00 -72.60 286.96 -3.97 -76.57 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -0.15 Total: 10.69 kcal Atomic # 6 Polarization: 26.91 SS G_CDS: 5.94 Total: 32.85 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -9.76 Total: -112.39 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -2.03 Total: -52.25 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -72.60 -3.97 -76.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700873252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.752 kcal (2) G-P(sol) polarization free energy of solvation -72.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds