Wall clock time and date at job start Mon Mar 30 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46573 * 2 1 4 4 N 1.46507 * 109.46948 * 180.02562 * 3 2 1 5 5 C 1.36702 * 120.00137 * 96.60463 * 4 3 2 6 6 H 1.07998 * 120.00209 * 163.92962 * 5 4 3 7 7 C 1.39167 * 119.99637 * 343.93886 * 5 4 3 8 8 N 1.31278 * 120.00432 * 340.77994 * 7 5 4 9 9 Si 1.86799 * 119.99790 * 160.78640 * 7 5 4 10 10 H 1.48502 * 109.47158 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47326 * 119.99392 * 9 7 5 12 12 H 1.48500 * 109.47396 * 239.99578 * 9 7 5 13 13 C 1.34774 * 119.99816 * 276.60669 * 4 3 2 14 14 O 1.21542 * 119.99824 * 183.37306 * 13 4 3 15 15 C 1.48251 * 120.00323 * 3.37918 * 13 4 3 16 16 C 1.39292 * 120.49456 * 187.19001 * 15 13 4 17 17 C 1.39529 * 118.31937 * 179.97438 * 16 15 13 18 18 O 1.35516 * 120.44419 * 180.02562 * 17 16 15 19 19 N 1.32657 * 119.10656 * 359.97438 * 17 16 15 20 20 C 1.32376 * 120.90678 * 0.02562 * 19 17 16 21 21 O 1.35470 * 119.07415 * 180.02562 * 20 19 17 22 22 N 1.32087 * 121.85074 * 0.27282 * 20 19 17 23 23 H 1.08998 * 109.47113 * 299.99517 * 1 2 3 24 24 H 1.08995 * 109.47362 * 60.00029 * 1 2 3 25 25 H 1.09003 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47113 * 240.00483 * 2 1 3 27 27 H 1.08995 * 109.47362 * 119.99971 * 2 1 3 28 28 H 1.08999 * 109.47382 * 60.00804 * 3 2 1 29 29 H 1.09004 * 109.47266 * 299.99782 * 3 2 1 30 30 H 0.97001 * 120.00600 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.83633 * 0.02562 * 16 15 13 32 32 H 0.96695 * 113.99878 * 269.97327 * 18 17 16 33 33 H 0.96694 * 113.99932 * 90.00531 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1880 1.5790 -1.1769 6 1 5.2363 1.8384 -1.1657 7 6 3.5323 1.3838 -2.3888 8 7 2.4015 0.7180 -2.4236 9 14 4.2615 2.0692 -3.9661 10 1 5.5316 2.7746 -3.6587 11 1 4.5295 0.9562 -4.9122 12 1 3.3031 3.0220 -4.5815 13 6 4.1793 1.3082 1.1585 14 8 5.3931 1.3697 1.1661 15 6 3.4405 1.0852 2.4244 16 6 4.1113 1.0936 3.6451 17 6 3.3713 0.8794 4.8085 18 8 3.9800 0.8792 6.0192 19 7 2.0637 0.6770 4.7134 20 6 1.4597 0.6758 3.5354 21 8 0.1225 0.4658 3.4815 22 7 2.1250 0.8689 2.4108 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6765 1.9564 -0.8900 30 1 1.9447 0.5816 -3.2684 31 1 5.1770 1.2626 3.6901 32 1 4.2967 0.0098 6.3000 33 1 -0.4051 1.2742 3.5364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701205564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:43 Heat of formation + Delta-G solvation = -25.932614 kcal Electronic energy + Delta-G solvation = -21040.181134 eV Core-core repulsion = 17682.979494 eV Total energy + Delta-G solvation = -3357.201640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00668 -38.60553 -37.98115 -36.39187 -35.43430 -33.20351 -32.04167 -31.45198 -30.38265 -26.37390 -25.23947 -23.79905 -23.61330 -20.83317 -20.34710 -18.64035 -18.29646 -17.81608 -16.90862 -15.94072 -15.57368 -15.36844 -14.91439 -14.64932 -14.12454 -13.93605 -13.60372 -12.98684 -12.69075 -12.32370 -12.15681 -11.92434 -11.69233 -11.38792 -11.04925 -10.93984 -10.60175 -10.49879 -10.41636 -10.18471 -10.12448 -9.45661 -9.16319 -9.03276 -8.87415 -8.42980 -7.83968 -6.57726 -4.01104 0.89089 1.03803 2.97953 3.09567 3.13267 3.19285 3.33845 3.86472 3.93132 4.23310 4.40918 4.93213 5.04499 5.16242 5.34861 5.67314 5.83750 6.16973 6.25984 6.30581 6.51772 6.65787 6.93302 6.99141 7.01661 7.11240 7.21165 7.40527 7.48115 7.60857 7.82081 7.90164 8.20403 8.33329 8.92173 9.13783 9.77882 10.31342 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.006914 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.100673 B = 4048.958034 C = 5028.975782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C 0.133 3.867 4 N -0.385 5.385 5 C -0.294 4.294 6 H 0.112 0.888 7 C 0.034 3.966 8 N -0.830 5.830 9 Si 0.931 3.069 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.449 3.551 14 O -0.593 6.593 15 C 0.189 3.811 16 C -0.212 4.212 17 C 0.367 3.633 18 O -0.476 6.476 19 N -0.563 5.563 20 C 0.501 3.499 21 O -0.455 6.455 22 N -0.491 5.491 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.034 0.966 26 H 0.094 0.906 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.274 0.726 31 H 0.161 0.839 32 H 0.405 0.595 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.027 0.220 6.808 7.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C 0.010 3.990 4 N -0.097 5.097 5 C -0.424 4.424 6 H 0.130 0.870 7 C -0.174 4.174 8 N -0.466 5.466 9 Si 0.756 3.244 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.239 3.761 14 O -0.480 6.480 15 C 0.044 3.956 16 C -0.237 4.237 17 C 0.180 3.820 18 O -0.283 6.283 19 N -0.302 5.302 20 C 0.196 3.804 21 O -0.258 6.258 22 N -0.222 5.222 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.263 0.737 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -4.582 0.041 6.566 8.007 hybrid contribution 0.713 0.242 -0.408 0.856 sum -3.870 0.284 6.159 7.279 Atomic orbital electron populations 1.21484 0.97570 0.99514 0.99959 1.21773 0.93822 0.97433 1.01821 1.21707 0.78679 0.98322 1.00273 1.43937 1.06884 1.53654 1.05269 1.20059 0.97180 1.43363 0.81771 0.87032 1.25545 0.96316 0.95477 1.00075 1.70085 1.16325 1.32553 1.27648 0.85793 0.79505 0.78970 0.80147 1.18781 1.20347 1.20194 1.17205 0.86579 0.89915 0.82432 1.90623 1.12320 1.59941 1.85106 1.21962 0.87608 0.90601 0.95409 1.22800 1.03751 1.05857 0.91337 1.18930 0.86010 0.91969 0.85063 1.84710 1.75157 1.35766 1.32670 1.67152 1.12391 1.19968 1.30662 1.20045 0.86570 0.91005 0.82782 1.84734 1.10918 1.35499 1.94641 1.69033 1.09104 1.14931 1.29088 0.93985 0.93809 0.94717 0.88747 0.94082 0.92171 0.90101 0.91470 0.82166 0.73662 0.73579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.11 -2.36 4.97 -26.73 -0.13 -2.50 16 3 C 0.13 2.97 4.14 -4.04 -0.02 2.95 16 4 N -0.39 -9.65 2.63 -115.75 -0.30 -9.95 16 5 C -0.29 -7.67 9.38 -15.04 -0.14 -7.81 16 6 H 0.11 3.04 7.32 -52.49 -0.38 2.65 16 7 C 0.03 0.81 4.95 -17.44 -0.09 0.73 16 8 N -0.83 -19.70 8.30 55.51 0.46 -19.23 16 9 Si 0.93 18.82 29.60 -169.99 -5.03 13.79 16 10 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 11 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 12 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 13 C 0.45 11.14 7.57 -12.14 -0.09 11.05 16 14 O -0.59 -16.15 16.06 5.33 0.09 -16.06 16 15 C 0.19 3.96 6.48 -82.71 -0.54 3.42 16 16 C -0.21 -3.84 9.67 -38.71 -0.37 -4.21 16 17 C 0.37 5.97 7.83 -16.71 -0.13 5.83 16 18 O -0.48 -6.19 13.57 -18.24 -0.25 -6.44 16 19 N -0.56 -9.70 10.47 -14.81 -0.16 -9.86 16 20 C 0.50 8.72 8.70 -91.40 -0.80 7.92 16 21 O -0.46 -6.62 13.29 -18.10 -0.24 -6.86 16 22 N -0.49 -9.52 4.12 -11.36 -0.05 -9.57 16 23 H 0.04 0.69 7.79 -51.93 -0.40 0.29 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.09 2.28 5.87 -51.93 -0.31 1.98 16 27 H 0.04 0.92 6.11 -51.93 -0.32 0.60 16 28 H 0.06 1.27 5.76 -51.93 -0.30 0.97 16 29 H 0.08 1.89 6.19 -51.93 -0.32 1.57 16 30 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 31 H 0.16 2.79 7.74 -52.49 -0.41 2.38 16 32 H 0.40 3.06 9.06 45.56 0.41 3.48 16 33 H 0.41 3.76 9.06 45.56 0.41 4.18 16 LS Contribution 282.45 15.07 4.26 4.26 Total: -1.00 -30.63 282.45 -4.75 -35.38 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -1.59 Total: 9.08 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -1.94 Total: 15.47 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.05 Total: -48.61 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.40 Total: -29.36 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.63 -4.75 -35.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701205564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.448 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds