Wall clock time and date at job start Mon Mar 30 2020 04:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46573 * 2 1 4 4 N 1.46507 * 109.46948 * 180.02562 * 3 2 1 5 5 C 1.36702 * 120.00137 * 96.60463 * 4 3 2 6 6 H 1.07998 * 120.00209 * 163.92962 * 5 4 3 7 7 C 1.39167 * 119.99637 * 343.93886 * 5 4 3 8 8 N 1.31278 * 120.00432 * 340.77994 * 7 5 4 9 9 Si 1.86799 * 119.99790 * 160.78640 * 7 5 4 10 10 H 1.48502 * 109.47158 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47326 * 119.99392 * 9 7 5 12 12 H 1.48500 * 109.47396 * 239.99578 * 9 7 5 13 13 C 1.34774 * 119.99816 * 276.60669 * 4 3 2 14 14 O 1.21542 * 119.99824 * 183.37306 * 13 4 3 15 15 C 1.48251 * 120.00323 * 3.37918 * 13 4 3 16 16 C 1.39292 * 120.49456 * 187.19001 * 15 13 4 17 17 C 1.39529 * 118.31937 * 179.97438 * 16 15 13 18 18 O 1.35516 * 120.44419 * 180.02562 * 17 16 15 19 19 N 1.32657 * 119.10656 * 359.97438 * 17 16 15 20 20 C 1.32376 * 120.90678 * 0.02562 * 19 17 16 21 21 O 1.35470 * 119.07415 * 180.02562 * 20 19 17 22 22 N 1.32087 * 121.85074 * 0.27282 * 20 19 17 23 23 H 1.08998 * 109.47113 * 299.99517 * 1 2 3 24 24 H 1.08995 * 109.47362 * 60.00029 * 1 2 3 25 25 H 1.09003 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47113 * 240.00483 * 2 1 3 27 27 H 1.08995 * 109.47362 * 119.99971 * 2 1 3 28 28 H 1.08999 * 109.47382 * 60.00804 * 3 2 1 29 29 H 1.09004 * 109.47266 * 299.99782 * 3 2 1 30 30 H 0.97001 * 120.00600 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.83633 * 0.02562 * 16 15 13 32 32 H 0.96695 * 113.99878 * 269.97327 * 18 17 16 33 33 H 0.96694 * 113.99932 * 90.00531 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1880 1.5790 -1.1769 6 1 5.2363 1.8384 -1.1657 7 6 3.5323 1.3838 -2.3888 8 7 2.4015 0.7180 -2.4236 9 14 4.2615 2.0692 -3.9661 10 1 5.5316 2.7746 -3.6587 11 1 4.5295 0.9562 -4.9122 12 1 3.3031 3.0220 -4.5815 13 6 4.1793 1.3082 1.1585 14 8 5.3931 1.3697 1.1661 15 6 3.4405 1.0852 2.4244 16 6 4.1113 1.0936 3.6451 17 6 3.3713 0.8794 4.8085 18 8 3.9800 0.8792 6.0192 19 7 2.0637 0.6770 4.7134 20 6 1.4597 0.6758 3.5354 21 8 0.1225 0.4658 3.4815 22 7 2.1250 0.8689 2.4108 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6765 1.9564 -0.8900 30 1 1.9447 0.5816 -3.2684 31 1 5.1770 1.2626 3.6901 32 1 4.2967 0.0098 6.3000 33 1 -0.4051 1.2742 3.5364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701205564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:42 Heat of formation + Delta-G solvation = -53.195773 kcal Electronic energy + Delta-G solvation = -21041.363353 eV Core-core repulsion = 17682.979494 eV Total energy + Delta-G solvation = -3358.383859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.46180 -40.35905 -39.18050 -37.68988 -37.29738 -34.75104 -33.68943 -33.23056 -31.82168 -28.12938 -26.89844 -25.41202 -25.02133 -22.45441 -21.94732 -20.07252 -19.69421 -19.23583 -18.72472 -17.48107 -17.12924 -16.74844 -16.50180 -16.09581 -15.87365 -15.67040 -15.24762 -14.72833 -14.14083 -13.78886 -13.66047 -13.51648 -13.14896 -12.84606 -12.66872 -12.51589 -12.32021 -12.05750 -12.03115 -11.71836 -11.70133 -11.19911 -10.85562 -10.76569 -10.43509 -10.07397 -9.67103 -8.37497 -5.96755 -0.60472 -0.30571 1.36019 1.44914 1.58065 1.76165 1.85967 2.22019 2.48004 2.63619 2.74948 3.07132 3.45369 3.80652 3.85178 4.29096 4.42319 4.58652 4.69056 4.89134 4.95379 5.05708 5.25604 5.32610 5.42551 5.49207 5.62506 5.74652 5.96980 6.06395 6.43053 6.48408 6.55390 6.80798 7.04754 7.29203 7.89618 8.50672 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.006914 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.100673 B = 4048.958034 C = 5028.975782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.099 4.099 3 C 0.143 3.857 4 N -0.399 5.399 5 C -0.346 4.346 6 H 0.084 0.916 7 C 0.010 3.990 8 N -0.841 5.841 9 Si 0.994 3.006 10 H -0.273 1.273 11 H -0.272 1.272 12 H -0.263 1.263 13 C 0.438 3.562 14 O -0.630 6.630 15 C 0.177 3.823 16 C -0.211 4.211 17 C 0.393 3.607 18 O -0.469 6.469 19 N -0.559 5.559 20 C 0.508 3.492 21 O -0.453 6.453 22 N -0.503 5.503 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.281 0.719 31 H 0.164 0.836 32 H 0.432 0.568 33 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.594 0.102 8.186 9.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 C 0.021 3.979 4 N -0.111 5.111 5 C -0.475 4.475 6 H 0.102 0.898 7 C -0.197 4.197 8 N -0.476 5.476 9 Si 0.816 3.184 10 H -0.198 1.198 11 H -0.197 1.197 12 H -0.187 1.187 13 C 0.228 3.772 14 O -0.520 6.520 15 C 0.032 3.968 16 C -0.236 4.236 17 C 0.205 3.795 18 O -0.280 6.280 19 N -0.298 5.298 20 C 0.204 3.796 21 O -0.259 6.259 22 N -0.234 5.234 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.181 0.819 32 H 0.296 0.704 33 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -6.207 -0.093 7.951 10.087 hybrid contribution 1.155 0.220 -0.551 1.298 sum -5.052 0.127 7.400 8.961 Atomic orbital electron populations 1.21381 0.94744 1.00479 1.00824 1.21600 0.96139 0.96246 0.99703 1.21687 0.77382 0.98833 0.99977 1.44106 1.07818 1.54027 1.05153 1.19925 0.96781 1.47460 0.83344 0.89805 1.26206 0.96699 0.94845 1.01951 1.70152 1.16731 1.32054 1.28638 0.84884 0.78537 0.78420 0.76519 1.19805 1.19710 1.18744 1.17809 0.86591 0.89103 0.83735 1.90563 1.14060 1.61163 1.86186 1.21431 0.88499 0.92333 0.94532 1.22846 1.04018 1.05645 0.91119 1.18860 0.85626 0.89558 0.85501 1.84671 1.74758 1.38050 1.30541 1.67356 1.12576 1.19570 1.30286 1.20107 0.87512 0.89755 0.82261 1.84705 1.09487 1.37250 1.94454 1.68869 1.08487 1.15592 1.30433 0.92213 0.93768 0.93679 0.91719 0.95204 0.90914 0.91597 0.90805 0.81854 0.70365 0.70678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 9.91 71.98 0.71 -3.28 16 2 C -0.10 -4.22 4.97 30.59 0.15 -4.07 16 3 C 0.14 6.48 4.14 86.38 0.36 6.84 16 4 N -0.40 -20.80 2.63 -638.40 -1.68 -22.48 16 5 C -0.35 -19.01 9.38 84.16 0.79 -18.22 16 6 H 0.08 4.92 7.32 -2.91 -0.02 4.90 16 7 C 0.01 0.50 4.95 85.00 0.42 0.92 16 8 N -0.84 -40.51 8.30 21.70 0.18 -40.33 16 9 Si 0.99 39.33 29.60 68.60 2.03 41.36 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 12 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 13 C 0.44 22.52 7.57 86.91 0.66 23.18 16 14 O -0.63 -35.98 16.06 -3.85 -0.06 -36.04 16 15 C 0.18 7.36 6.48 41.84 0.27 7.63 16 16 C -0.21 -7.37 9.67 22.84 0.22 -7.14 16 17 C 0.39 11.61 7.83 84.88 0.66 12.27 16 18 O -0.47 -10.37 13.57 -88.19 -1.20 -11.57 16 19 N -0.56 -17.40 10.47 -426.43 -4.46 -21.87 16 20 C 0.51 16.30 8.70 180.62 1.57 17.87 16 21 O -0.45 -11.57 13.29 -87.69 -1.17 -12.73 16 22 N -0.50 -18.88 4.12 -302.91 -1.25 -20.13 16 23 H 0.06 1.82 7.79 -2.39 -0.02 1.80 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 3.18 5.87 -2.39 -0.01 3.17 16 27 H 0.03 1.33 6.11 -2.39 -0.01 1.31 16 28 H 0.07 3.06 5.76 -2.39 -0.01 3.04 16 29 H 0.07 3.14 6.19 -2.39 -0.01 3.13 16 30 H 0.28 12.47 8.31 -92.71 -0.77 11.70 16 31 H 0.16 5.57 7.74 -2.91 -0.02 5.55 16 32 H 0.43 4.67 9.06 -74.06 -0.67 4.00 16 33 H 0.43 6.27 9.06 -74.06 -0.67 5.60 16 Total: -1.00 -67.99 282.45 -1.94 -69.92 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.15 Total: 17.87 kcal Atomic # 6 Polarization: 30.18 SS G_CDS: 5.82 Total: 36.00 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -7.21 Total: -104.81 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -2.42 Total: -60.35 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -67.99 -1.94 -69.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701205564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.728 kcal (2) G-P(sol) polarization free energy of solvation -67.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds