Wall clock time and date at job start Mon Mar 30 2020 04:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46974 * 2 1 4 4 C 1.50697 * 109.46970 * 240.00578 * 2 1 3 5 5 H 1.08004 * 119.99658 * 239.99818 * 4 2 1 6 6 C 1.37872 * 120.00237 * 59.99605 * 4 2 1 7 7 N 1.31513 * 120.00171 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99963 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47006 * 90.00300 * 8 6 4 10 10 H 1.48499 * 109.47238 * 210.00154 * 8 6 4 11 11 H 1.48496 * 109.47399 * 330.00336 * 8 6 4 12 12 N 1.46497 * 109.47197 * 120.00394 * 2 1 3 13 13 C 1.46496 * 120.00296 * 59.99924 * 12 2 1 14 14 C 1.34777 * 119.99936 * 240.00175 * 12 2 1 15 15 O 1.21486 * 120.00303 * 356.99054 * 14 12 2 16 16 C 1.48461 * 120.00209 * 176.99595 * 14 12 2 17 17 C 1.39154 * 120.48383 * 186.74848 * 16 14 12 18 18 C 1.39603 * 118.32860 * 179.78113 * 17 16 14 19 19 O 1.35506 * 120.45766 * 180.25716 * 18 17 16 20 20 N 1.32623 * 119.08894 * 0.48797 * 18 17 16 21 21 C 1.32373 * 120.88545 * 359.74795 * 20 18 17 22 22 O 1.35464 * 119.07768 * 179.97438 * 21 20 18 23 23 N 1.32093 * 121.83587 * 0.02562 * 21 20 18 24 24 H 1.09002 * 109.46974 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47159 * 299.99466 * 1 2 3 26 26 H 1.08997 * 109.47328 * 59.99920 * 1 2 3 27 27 H 0.96997 * 119.99749 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47067 * 96.06050 * 13 12 2 29 29 H 1.09003 * 109.47559 * 216.06298 * 13 12 2 30 30 H 1.09000 * 109.47334 * 336.05784 * 13 12 2 31 31 H 1.08006 * 120.83457 * 0.02562 * 17 16 14 32 32 H 0.96695 * 114.00235 * 270.22943 * 19 18 17 33 33 H 0.96699 * 113.99350 * 270.01998 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4124 10 1 2.4872 -0.1399 -5.1120 11 1 3.6308 -1.7563 -3.7121 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1319 1.1103 1.8644 16 6 3.2330 -0.7147 3.3282 17 6 3.9137 -0.0081 4.3149 18 6 4.3023 -0.6901 5.4694 19 8 4.9627 -0.0429 6.4600 20 7 4.0202 -1.9811 5.5814 21 6 3.3750 -2.6216 4.6192 22 8 3.1063 -3.9405 4.7716 23 7 2.9869 -2.0107 3.5142 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 0.7094 1.1619 -3.4843 28 1 2.4680 -2.7351 1.0668 29 1 1.5184 -2.2596 2.4952 30 1 0.7437 -2.3286 0.8942 31 1 4.1324 1.0425 4.1925 32 1 5.9250 -0.0567 6.3655 33 1 3.7989 -4.5246 4.4335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701208072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:44 Heat of formation + Delta-G solvation = -33.689982 kcal Electronic energy + Delta-G solvation = -20327.547654 eV Core-core repulsion = 16970.009629 eV Total energy + Delta-G solvation = -3357.538025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.54653 -39.10895 -38.40797 -36.85186 -35.54193 -33.73289 -32.63166 -30.96138 -29.45857 -26.29741 -25.39510 -25.07880 -24.18147 -21.79114 -19.98928 -18.96798 -18.37934 -17.89887 -16.84904 -16.38126 -15.91564 -15.69431 -15.35838 -14.85142 -14.72739 -14.33598 -13.30508 -13.11142 -12.74298 -12.65335 -12.39071 -12.13924 -11.78789 -11.57639 -11.11835 -10.93352 -10.78591 -10.77586 -10.59351 -10.32417 -10.20842 -9.82865 -9.58211 -9.21239 -8.90255 -8.47538 -7.68375 -6.11060 -4.19156 0.38855 0.53131 2.48462 2.98782 3.25189 3.31933 3.32696 3.34948 3.51936 3.74702 4.32135 4.44099 4.60320 4.73300 5.18248 5.20699 5.29057 5.74465 6.08581 6.33794 6.44217 6.61883 6.74572 6.79382 6.98045 7.00849 7.20310 7.32567 7.40518 7.66290 7.67856 7.94518 8.11114 8.37774 8.66389 8.87743 9.47020 10.94403 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029237 B = 0.005009 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.465122 B = 5588.354323 C = 5953.340459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.254 3.746 3 H 0.066 0.934 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.557 5.557 13 C 0.080 3.920 14 C 0.548 3.452 15 O -0.535 6.535 16 C 0.181 3.819 17 C -0.197 4.197 18 C 0.380 3.620 19 O -0.470 6.470 20 N -0.544 5.544 21 C 0.509 3.491 22 O -0.454 6.454 23 N -0.493 5.493 24 H 0.033 0.967 25 H 0.013 0.987 26 H 0.096 0.904 27 H 0.264 0.736 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.170 0.830 32 H 0.410 0.590 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.337 -6.143 12.912 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.154 3.846 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.286 5.286 13 C -0.063 4.063 14 C 0.331 3.669 15 O -0.413 6.413 16 C 0.035 3.965 17 C -0.222 4.222 18 C 0.192 3.808 19 O -0.278 6.278 20 N -0.281 5.281 21 C 0.204 3.796 22 O -0.257 6.257 23 N -0.223 5.223 24 H 0.052 0.948 25 H 0.032 0.968 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.188 0.812 32 H 0.270 0.730 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 5.148 -6.120 13.195 15.430 hybrid contribution 1.328 -0.154 -1.120 1.744 sum 6.476 -6.274 12.075 15.070 Atomic orbital electron populations 1.22113 0.97712 0.99747 1.01045 1.19142 0.91221 0.94585 0.79642 0.91629 1.21272 1.32034 1.13056 0.90014 0.92106 1.24885 0.94908 0.94955 0.98978 1.69873 1.36303 1.22509 1.23875 0.86453 0.79195 0.79270 0.82226 1.20552 1.21081 1.19949 1.48288 1.45829 1.12542 1.21917 1.22180 1.00476 0.81238 1.02415 1.17687 0.81153 0.85898 0.82184 1.90774 1.57297 1.17022 1.76211 1.21961 0.91031 0.88151 0.95393 1.22983 1.01925 1.04542 0.92714 1.18982 0.91055 0.85479 0.85329 1.84749 1.24575 1.72501 1.45930 1.67243 1.17172 1.11043 1.32684 1.20021 0.88219 0.87066 0.84272 1.84739 1.47343 1.10377 1.83247 1.68754 1.19975 1.10999 1.22587 0.94782 0.96829 0.88534 0.92602 0.93182 0.89108 0.91565 0.81202 0.72995 0.72720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.96 37.16 0.33 -3.17 16 2 C 0.25 6.41 2.62 -69.08 -0.18 6.23 16 3 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.04 8.37 -34.44 -0.29 -14.33 16 5 H 0.06 1.61 7.65 -52.48 -0.40 1.21 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.68 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.56 -12.08 2.75 -176.15 -0.48 -12.57 16 13 C 0.08 1.46 8.59 59.84 0.51 1.97 16 14 C 0.55 11.37 7.67 -12.05 -0.09 11.27 16 15 O -0.54 -12.57 15.77 5.38 0.08 -12.48 16 16 C 0.18 3.00 6.65 -82.71 -0.55 2.45 16 17 C -0.20 -2.72 9.67 -38.73 -0.37 -3.09 16 18 C 0.38 4.70 7.83 -16.70 -0.13 4.57 16 19 O -0.47 -4.48 13.57 -18.21 -0.25 -4.73 16 20 N -0.54 -7.32 10.47 -14.80 -0.15 -7.47 16 21 C 0.51 6.88 8.70 -91.40 -0.80 6.08 16 22 O -0.45 -4.95 13.64 -18.08 -0.25 -5.20 16 23 N -0.49 -7.52 6.23 -11.35 -0.07 -7.59 16 24 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.52 5.19 -52.11 -0.27 1.25 16 30 H 0.07 1.21 6.44 -51.93 -0.33 0.88 16 31 H 0.17 2.19 7.74 -52.48 -0.41 1.78 16 32 H 0.41 1.59 9.06 45.56 0.41 2.00 16 33 H 0.41 2.24 9.06 45.56 0.41 2.65 16 LS Contribution 288.35 15.07 4.35 4.35 Total: -1.00 -33.08 288.35 -4.41 -37.49 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -1.59 Total: 2.84 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: -1.66 Total: 13.64 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.08 Total: -51.68 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.41 Total: -22.41 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.08 -4.41 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701208072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.805 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds