Wall clock time and date at job start Mon Mar 30 2020 04:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46974 * 2 1 4 4 C 1.50697 * 109.46970 * 240.00578 * 2 1 3 5 5 H 1.08004 * 119.99658 * 239.99818 * 4 2 1 6 6 C 1.37872 * 120.00237 * 59.99605 * 4 2 1 7 7 N 1.31513 * 120.00171 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99963 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47006 * 90.00300 * 8 6 4 10 10 H 1.48499 * 109.47238 * 210.00154 * 8 6 4 11 11 H 1.48496 * 109.47399 * 330.00336 * 8 6 4 12 12 N 1.46497 * 109.47197 * 120.00394 * 2 1 3 13 13 C 1.46496 * 120.00296 * 59.99924 * 12 2 1 14 14 C 1.34777 * 119.99936 * 240.00175 * 12 2 1 15 15 O 1.21486 * 120.00303 * 356.99054 * 14 12 2 16 16 C 1.48461 * 120.00209 * 176.99595 * 14 12 2 17 17 C 1.39154 * 120.48383 * 186.74848 * 16 14 12 18 18 C 1.39603 * 118.32860 * 179.78113 * 17 16 14 19 19 O 1.35506 * 120.45766 * 180.25716 * 18 17 16 20 20 N 1.32623 * 119.08894 * 0.48797 * 18 17 16 21 21 C 1.32373 * 120.88545 * 359.74795 * 20 18 17 22 22 O 1.35464 * 119.07768 * 179.97438 * 21 20 18 23 23 N 1.32093 * 121.83587 * 0.02562 * 21 20 18 24 24 H 1.09002 * 109.46974 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47159 * 299.99466 * 1 2 3 26 26 H 1.08997 * 109.47328 * 59.99920 * 1 2 3 27 27 H 0.96997 * 119.99749 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47067 * 96.06050 * 13 12 2 29 29 H 1.09003 * 109.47559 * 216.06298 * 13 12 2 30 30 H 1.09000 * 109.47334 * 336.05784 * 13 12 2 31 31 H 1.08006 * 120.83457 * 0.02562 * 17 16 14 32 32 H 0.96695 * 114.00235 * 270.22943 * 19 18 17 33 33 H 0.96699 * 113.99350 * 270.01998 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4124 10 1 2.4872 -0.1399 -5.1120 11 1 3.6308 -1.7563 -3.7121 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1319 1.1103 1.8644 16 6 3.2330 -0.7147 3.3282 17 6 3.9137 -0.0081 4.3149 18 6 4.3023 -0.6901 5.4694 19 8 4.9627 -0.0429 6.4600 20 7 4.0202 -1.9811 5.5814 21 6 3.3750 -2.6216 4.6192 22 8 3.1063 -3.9405 4.7716 23 7 2.9869 -2.0107 3.5142 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 0.7094 1.1619 -3.4843 28 1 2.4680 -2.7351 1.0668 29 1 1.5184 -2.2596 2.4952 30 1 0.7437 -2.3286 0.8942 31 1 4.1324 1.0425 4.1925 32 1 5.9250 -0.0567 6.3655 33 1 3.7989 -4.5246 4.4335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701208072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:43 Heat of formation + Delta-G solvation = -64.541397 kcal Electronic energy + Delta-G solvation = -20328.885472 eV Core-core repulsion = 16970.009629 eV Total energy + Delta-G solvation = -3358.875843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.65614 -40.66804 -39.27535 -37.83343 -37.31666 -35.13188 -34.28858 -32.05166 -31.33494 -27.80073 -27.32817 -26.56005 -25.20385 -23.31861 -21.38202 -20.11588 -19.52222 -19.06626 -18.49965 -17.77744 -17.35026 -17.06624 -16.80904 -16.32803 -16.11801 -15.74587 -14.83924 -14.54472 -14.35978 -13.98730 -13.61953 -13.50322 -13.33173 -12.99511 -12.85326 -12.72092 -12.64278 -12.21961 -12.14516 -11.95935 -11.72717 -11.43092 -11.18946 -10.64492 -10.53709 -10.17946 -9.42262 -8.15172 -6.31575 -0.79187 -0.46303 1.42971 1.44099 1.45890 1.53936 1.67406 2.08080 2.33679 2.41411 2.48425 3.08449 3.13264 3.51867 3.67797 4.11057 4.25891 4.53417 4.75194 4.77591 4.86978 4.90532 5.03644 5.24084 5.40863 5.42272 5.58301 5.64320 5.96618 6.12406 6.39391 6.49845 6.57670 6.66404 6.73631 7.08161 7.39788 8.89455 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029237 B = 0.005009 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.465122 B = 5588.354323 C = 5953.340459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.257 3.743 3 H 0.020 0.980 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.966 3.034 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.569 5.569 13 C 0.087 3.913 14 C 0.543 3.457 15 O -0.573 6.573 16 C 0.168 3.832 17 C -0.192 4.192 18 C 0.403 3.597 19 O -0.467 6.467 20 N -0.547 5.547 21 C 0.517 3.483 22 O -0.454 6.454 23 N -0.506 5.506 24 H 0.047 0.953 25 H 0.022 0.978 26 H 0.073 0.927 27 H 0.266 0.734 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.175 0.825 32 H 0.437 0.563 33 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 -7.868 14.152 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.156 3.844 3 H 0.038 0.962 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.297 5.297 13 C -0.055 4.055 14 C 0.329 3.671 15 O -0.454 6.454 16 C 0.023 3.977 17 C -0.217 4.217 18 C 0.213 3.787 19 O -0.279 6.279 20 N -0.285 5.285 21 C 0.212 3.788 22 O -0.261 6.261 23 N -0.237 5.237 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.193 0.807 32 H 0.302 0.698 33 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 6.080 -7.895 14.455 17.557 hybrid contribution 1.131 0.379 -1.359 1.808 sum 7.211 -7.517 13.096 16.733 Atomic orbital electron populations 1.21910 0.96713 1.00319 1.00329 1.18771 0.91958 0.92583 0.81091 0.96198 1.21495 1.32213 1.13102 0.90948 0.92280 1.25699 0.94995 0.95594 1.01889 1.70004 1.37122 1.23681 1.24572 0.85432 0.78787 0.78247 0.78395 1.19360 1.20966 1.19663 1.48255 1.46357 1.13756 1.21291 1.22281 1.00333 0.79263 1.03605 1.18223 0.80167 0.85598 0.83150 1.90735 1.58462 1.18781 1.77406 1.21205 0.93198 0.89035 0.94297 1.23008 1.01263 1.04741 0.92696 1.18916 0.89999 0.84977 0.84834 1.84711 1.26823 1.71888 1.44448 1.67421 1.17244 1.11310 1.32495 1.20048 0.87298 0.87873 0.83564 1.84714 1.48665 1.09431 1.83283 1.68537 1.21025 1.10379 1.23738 0.93421 0.95862 0.90839 0.92495 0.92742 0.87290 0.91895 0.80705 0.69787 0.69920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.96 71.98 0.64 -5.84 16 2 C 0.26 13.41 2.62 44.25 0.12 13.53 16 3 H 0.02 1.22 6.90 -2.39 -0.02 1.20 16 4 C -0.54 -29.29 8.37 25.60 0.21 -29.08 16 5 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.92 -51.96 11.32 21.45 0.24 -51.72 16 8 Si 0.97 42.67 29.54 68.60 2.03 44.69 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 N -0.57 -25.03 2.75 -829.51 -2.28 -27.32 16 13 C 0.09 3.12 8.59 127.77 1.10 4.22 16 14 C 0.54 22.99 7.67 86.97 0.67 23.65 16 15 O -0.57 -27.99 15.77 -3.67 -0.06 -28.05 16 16 C 0.17 5.43 6.65 41.88 0.28 5.71 16 17 C -0.19 -5.03 9.67 22.82 0.22 -4.81 16 18 C 0.40 8.85 7.83 84.90 0.67 9.52 16 19 O -0.47 -7.31 13.57 -88.08 -1.20 -8.50 16 20 N -0.55 -13.09 10.47 -426.43 -4.46 -17.56 16 21 C 0.52 12.65 8.70 180.62 1.57 14.22 16 22 O -0.45 -8.55 13.64 -87.62 -1.19 -9.75 16 23 N -0.51 -14.60 6.23 -302.88 -1.89 -16.49 16 24 H 0.05 2.11 6.67 -2.39 -0.02 2.10 16 25 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 27 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.11 3.52 5.19 -2.75 -0.01 3.51 16 30 H 0.06 2.26 6.44 -2.39 -0.02 2.24 16 31 H 0.18 4.34 7.74 -2.91 -0.02 4.32 16 32 H 0.44 1.71 9.06 -74.06 -0.67 1.04 16 33 H 0.44 3.33 9.06 -74.06 -0.67 2.66 16 Total: -1.00 -72.05 288.35 -3.04 -75.09 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -0.15 Total: 7.05 kcal Atomic # 6 Polarization: 26.62 SS G_CDS: 5.93 Total: 32.55 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -8.39 Total: -113.08 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -2.45 Total: -46.30 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -72.05 -3.04 -75.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701208072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.545 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds