Wall clock time and date at job start Mon Mar 30 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48496 * 109.47436 * 240.00053 * 3 2 1 5 5 H 1.48498 * 109.47440 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47278 * 120.00056 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 11 16 16 C 1.38222 * 120.37644 * 125.00024 * 15 14 12 17 17 C 1.39384 * 118.47112 * 179.97438 * 16 15 14 18 18 O 1.35509 * 120.47625 * 179.97438 * 17 16 15 19 19 N 1.32777 * 119.04681 * 0.02562 * 17 16 15 20 20 C 1.32284 * 120.66468 * 359.97438 * 19 17 16 21 21 O 1.35454 * 119.16971 * 179.97438 * 20 19 17 22 22 N 1.32330 * 121.66595 * 359.72186 * 20 19 17 23 23 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 25 25 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 26 26 H 1.08998 * 109.47382 * 59.99730 * 10 9 7 27 27 H 1.09002 * 109.47216 * 300.00167 * 10 9 7 28 28 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 29 29 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 30 30 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 31 31 H 1.07999 * 120.76488 * 359.97438 * 16 15 14 32 32 H 0.96703 * 113.99878 * 90.00943 * 18 17 16 33 33 H 0.96703 * 113.99673 * 90.00391 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5125 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0007 13 8 3.3992 -6.0981 -0.0003 14 6 1.4327 -7.4032 -0.0076 15 6 2.4120 -8.5486 -0.0125 16 6 2.3457 -9.5291 0.9595 17 6 3.2708 -10.5708 0.9168 18 8 3.2432 -11.5532 1.8497 19 7 4.1802 -10.5860 -0.0506 20 6 4.2110 -9.6286 -0.9629 21 8 5.1521 -9.6739 -1.9360 22 7 3.3424 -8.6303 -0.9518 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8898 26 1 2.8717 -3.6045 0.8894 27 1 2.8717 -3.6045 -0.8905 28 1 0.5425 -4.9308 -0.0011 29 1 0.8055 -7.4652 0.8817 30 1 0.8067 -7.4565 -0.8983 31 1 1.5943 -9.4890 1.7342 32 1 2.6851 -12.3062 1.6115 33 1 4.8760 -10.1549 -2.7281 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701317835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:29 Heat of formation + Delta-G solvation = -107.797906 kcal Electronic energy + Delta-G solvation = -19101.504772 eV Core-core repulsion = 15740.753186 eV Total energy + Delta-G solvation = -3360.751586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.42138 -40.56589 -39.18705 -37.99445 -36.56219 -34.91609 -34.79997 -32.65464 -31.67583 -29.88439 -26.70947 -25.15558 -24.36049 -22.84128 -21.59810 -20.41440 -19.52419 -18.86445 -18.53656 -17.93428 -17.39021 -16.68049 -16.56655 -16.53208 -16.35702 -15.72502 -15.10673 -14.79396 -14.65140 -14.23541 -14.03332 -13.47018 -13.28122 -13.20674 -12.91109 -12.75323 -12.54052 -12.19956 -11.91148 -11.66059 -11.59712 -11.46302 -10.89269 -10.59087 -10.39210 -10.34770 -9.96989 -8.23788 -6.33646 -0.33419 -0.17146 1.41917 1.43662 1.51734 1.72239 1.81265 2.17924 2.41391 2.52672 2.66654 3.10547 3.10972 3.72378 3.88363 4.05525 4.13865 4.35157 4.48925 4.54115 4.56001 4.64235 4.88143 5.08748 5.32956 5.52119 5.61391 5.75066 5.80671 6.18253 6.49474 6.55065 6.68919 6.79320 6.89990 7.35386 7.36996 8.87645 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.040357 B = 0.003096 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.648705 B = 9042.350729 C = 9399.085657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.142 3.858 11 N -0.715 5.715 12 C 0.507 3.493 13 O -0.585 6.585 14 C -0.085 4.085 15 C 0.211 3.789 16 C -0.229 4.229 17 C 0.376 3.624 18 O -0.475 6.475 19 N -0.575 5.575 20 C 0.506 3.494 21 O -0.469 6.469 22 N -0.535 5.535 23 H 0.266 0.734 24 H 0.011 0.989 25 H 0.013 0.987 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.415 0.585 29 H 0.167 0.833 30 H 0.152 0.848 31 H 0.201 0.799 32 H 0.433 0.567 33 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -24.002 0.355 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.073 0.927 9 C -0.013 4.013 10 C 0.018 3.982 11 N -0.366 5.366 12 C 0.294 3.706 13 O -0.465 6.465 14 C -0.124 4.124 15 C 0.066 3.934 16 C -0.252 4.252 17 C 0.188 3.812 18 O -0.286 6.286 19 N -0.313 5.313 20 C 0.201 3.799 21 O -0.276 6.276 22 N -0.262 5.262 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.031 0.969 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.252 0.748 29 H 0.185 0.815 30 H 0.169 0.831 31 H 0.218 0.782 32 H 0.297 0.703 33 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -0.856 -23.312 0.294 23.330 hybrid contribution -0.693 0.487 -0.125 0.856 sum -1.549 -22.825 0.169 22.878 Atomic orbital electron populations 1.70034 1.07371 1.28055 1.50896 1.25815 0.95804 1.02886 0.94421 0.85552 0.78383 0.78420 0.79027 1.19553 1.20391 1.19481 1.21460 0.93485 0.92242 1.51702 0.92729 1.19115 0.94152 0.91429 0.96592 1.21151 0.95051 0.82689 0.99336 1.46035 1.11204 1.05164 1.74244 1.20990 0.87877 0.86269 0.75513 1.90741 1.16413 1.88234 1.51145 1.20868 0.96012 0.85315 1.10217 1.21171 0.90662 0.93616 0.87949 1.23050 1.03323 0.96340 1.02447 1.19275 0.87224 0.89901 0.84764 1.84738 1.73512 1.32271 1.38107 1.67363 1.26706 1.30752 1.06463 1.19917 0.86378 0.84892 0.88673 1.84720 1.36220 1.78300 1.28311 1.67780 1.05258 1.23407 1.29733 0.92486 0.97066 0.96883 0.94001 0.94278 0.74810 0.81545 0.83074 0.78203 0.70340 0.70628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.55 13.29 21.45 0.28 -53.26 16 2 C 0.01 0.55 5.46 84.66 0.46 1.01 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -30.81 9.11 25.60 0.23 -30.58 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.14 6.05 5.61 86.38 0.48 6.54 16 11 N -0.71 -22.74 5.56 -463.06 -2.57 -25.31 16 12 C 0.51 15.66 7.77 87.66 0.68 16.34 16 13 O -0.59 -24.85 15.37 -3.04 -0.05 -24.89 16 14 C -0.08 -1.44 6.13 29.10 0.18 -1.26 16 15 C 0.21 4.65 5.77 42.46 0.24 4.89 16 16 C -0.23 -3.69 9.75 22.54 0.22 -3.47 16 17 C 0.38 7.36 7.83 84.83 0.66 8.02 16 18 O -0.47 -6.50 13.57 -88.12 -1.20 -7.69 16 19 N -0.57 -14.81 10.49 -426.37 -4.47 -19.28 16 20 C 0.51 14.14 8.71 180.58 1.57 15.71 16 21 O -0.47 -11.71 13.64 -87.52 -1.19 -12.91 16 22 N -0.53 -15.55 9.41 -301.70 -2.84 -18.39 16 23 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 24 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.42 10.30 8.47 -92.71 -0.79 9.51 16 29 H 0.17 1.22 7.93 -2.38 -0.02 1.20 16 30 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.20 1.40 8.00 -2.91 -0.02 1.37 16 32 H 0.43 0.59 9.06 -74.05 -0.67 -0.08 16 33 H 0.43 5.27 9.06 -74.06 -0.67 4.60 16 Total: -1.00 -85.53 302.70 -6.05 -91.59 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -0.94 Total: 5.88 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 4.89 Total: 18.57 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -9.60 Total: -116.24 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -2.44 Total: -45.49 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -85.53 -6.05 -91.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701317835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.210 kcal (2) G-P(sol) polarization free energy of solvation -85.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds