Wall clock time and date at job start Mon Mar 30 2020 04:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46973 * 188.38432 * 3 2 1 5 5 C 1.36937 * 119.99895 * 264.19450 * 4 3 2 6 6 H 1.07998 * 120.00183 * 197.43587 * 5 4 3 7 7 C 1.38817 * 120.00139 * 17.42893 * 5 4 3 8 8 N 1.31620 * 119.99509 * 21.86704 * 7 5 4 9 9 Si 1.86792 * 120.00217 * 201.86749 * 7 5 4 10 10 H 1.48502 * 109.47125 * 59.99993 * 9 7 5 11 11 H 1.48504 * 109.47329 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47484 * 299.99932 * 9 7 5 13 13 C 1.46502 * 120.00611 * 84.18858 * 4 3 2 14 14 H 1.09004 * 110.53259 * 358.84693 * 13 4 3 15 15 C 1.54619 * 110.48966 * 236.23088 * 13 4 3 16 16 C 1.54478 * 101.76720 * 216.52280 * 15 13 4 17 17 N 1.46767 * 105.47234 * 25.41255 * 16 15 13 18 18 C 1.46502 * 124.34629 * 162.98073 * 17 16 15 19 19 C 1.50699 * 109.47175 * 270.02827 * 18 17 16 20 20 O 1.20818 * 119.99982 * 0.02562 * 19 18 17 21 21 O 1.34231 * 119.99592 * 180.02562 * 19 18 17 22 22 C 1.34420 * 111.29993 * 342.98914 * 17 16 15 23 23 O 1.21281 * 124.94148 * 180.66976 * 22 17 16 24 24 H 1.08996 * 109.47179 * 68.38032 * 3 2 1 25 25 H 1.09005 * 109.47235 * 308.38077 * 3 2 1 26 26 H 0.97002 * 119.99943 * 180.02562 * 8 7 5 27 27 H 1.09007 * 110.97345 * 334.64222 * 15 13 4 28 28 H 1.09003 * 110.97133 * 98.40192 * 15 13 4 29 29 H 1.09000 * 110.24677 * 144.41769 * 16 15 13 30 30 H 1.09000 * 110.24644 * 266.41576 * 16 15 13 31 31 H 1.09000 * 109.47124 * 30.03268 * 18 17 16 32 32 H 1.09005 * 109.46684 * 150.02572 * 18 17 16 33 33 H 0.96696 * 116.99826 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3673 0.2014 5 6 3.4366 2.1385 -0.8775 6 1 4.0487 3.0178 -0.7410 7 6 2.9956 1.7902 -2.1469 8 7 1.9390 1.0181 -2.2875 9 14 3.9018 2.4171 -3.6552 10 1 5.3082 1.9416 -3.6210 11 1 3.2365 1.9057 -4.8805 12 1 3.8814 3.9019 -3.6634 13 6 3.2185 1.9090 1.5570 14 1 2.8884 1.1759 2.2931 15 6 2.4049 3.2168 1.6930 16 6 3.3076 4.0538 2.6262 17 7 4.6659 3.5354 2.4255 18 6 5.8870 4.2415 2.8211 19 6 6.3560 5.1105 1.6827 20 8 5.7339 5.1376 0.6474 21 8 7.4650 5.8543 1.8191 22 6 4.6455 2.3296 1.8318 23 8 5.6279 1.6721 1.5607 24 1 2.9715 -0.3778 -0.9553 25 1 2.9716 -0.6373 0.8056 26 1 1.6310 0.7743 -3.1744 27 1 2.2854 3.7044 0.7255 28 1 1.4359 3.0271 2.1548 29 1 3.2613 5.1074 2.3504 30 1 3.0029 3.9212 3.6643 31 1 5.6810 4.8636 3.6921 32 1 6.6623 3.5161 3.0680 33 1 7.7262 6.3959 1.0618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702161322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:31 Heat of formation + Delta-G solvation = -54.648419 kcal Electronic energy + Delta-G solvation = -20924.766613 eV Core-core repulsion = 17566.319762 eV Total energy + Delta-G solvation = -3358.446851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50040 -39.45223 -36.31117 -36.08747 -35.62381 -34.29699 -32.36869 -30.71355 -27.67741 -27.23647 -26.19576 -22.97571 -22.15299 -20.76818 -18.99330 -18.08248 -17.54856 -16.76310 -16.37497 -16.12060 -15.69545 -15.41426 -15.01673 -14.20201 -13.68030 -13.55725 -13.29664 -12.96364 -12.88647 -12.40229 -12.24547 -12.01413 -11.78394 -11.40279 -11.28852 -11.27793 -10.93765 -10.81209 -10.62459 -10.49526 -10.21483 -9.91724 -9.87982 -9.46069 -8.62976 -8.56665 -7.18310 -5.96795 -3.34592 2.30769 2.63090 3.27651 3.39434 3.43918 3.44613 3.51070 4.11707 4.35844 4.50818 4.75614 4.99971 5.12247 5.18788 5.26936 5.31160 5.42373 5.50910 5.63589 5.73579 5.83184 5.88356 6.39922 6.54780 6.55938 6.69426 6.83912 7.02269 7.39185 7.73426 7.97191 8.09447 8.70323 8.95738 9.16503 9.58759 10.00621 11.11754 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018327 B = 0.008043 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.459463 B = 3480.582247 C = 4455.567110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.251 3.749 3 C 0.258 3.742 4 N -0.557 5.557 5 C -0.259 4.259 6 H 0.082 0.918 7 C 0.010 3.990 8 N -0.900 5.900 9 Si 0.907 3.093 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.148 3.852 14 H 0.097 0.903 15 C -0.144 4.144 16 C 0.110 3.890 17 N -0.617 5.617 18 C 0.140 3.860 19 C 0.448 3.552 20 O -0.488 6.488 21 O -0.525 6.525 22 C 0.518 3.482 23 O -0.517 6.517 24 H 0.116 0.884 25 H 0.062 0.938 26 H 0.260 0.740 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 6.744 12.326 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.068 4.068 3 C 0.129 3.871 4 N -0.276 5.276 5 C -0.387 4.387 6 H 0.099 0.901 7 C -0.189 4.189 8 N -0.543 5.543 9 Si 0.737 3.263 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.036 3.964 14 H 0.114 0.886 15 C -0.184 4.184 16 C -0.013 4.013 17 N -0.354 5.354 18 C 0.015 3.985 19 C 0.286 3.714 20 O -0.372 6.372 21 O -0.337 6.337 22 C 0.304 3.696 23 O -0.390 6.390 24 H 0.134 0.866 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 5.900 6.086 12.026 14.713 hybrid contribution 1.024 1.101 -1.618 2.209 sum 6.924 7.187 10.407 14.419 Atomic orbital electron populations 1.80815 1.14352 1.10276 1.13211 1.30428 0.96207 0.90945 0.89227 1.18322 0.80383 0.86015 1.02421 1.43790 1.73471 1.10627 0.99733 1.19148 1.25931 1.09044 0.84585 0.90063 1.24827 0.96145 0.99765 0.98150 1.69908 1.21323 1.40241 1.22865 0.86271 0.79697 0.78558 0.81789 1.20778 1.21665 1.20849 1.20951 0.90472 0.95262 0.89743 0.88553 1.23085 0.97624 0.96596 1.01062 1.22090 0.80753 0.98995 0.99423 1.48065 1.05279 1.19746 1.62267 1.20607 0.89380 0.95526 0.92969 1.24437 0.77949 0.78652 0.90320 1.90828 1.55014 1.61974 1.29422 1.84502 1.44036 1.56838 1.48294 1.22247 0.93560 0.79747 0.74000 1.90626 1.40166 1.57442 1.50767 0.86635 0.91986 0.92927 0.88206 0.90295 0.91297 0.91427 0.86571 0.86161 0.73402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.58 18.54 42.15 0.78 -11.80 16 2 C 0.25 5.83 13.66 -20.76 -0.28 5.55 16 3 C 0.26 5.55 5.36 -6.83 -0.04 5.51 16 4 N -0.56 -12.67 2.51 -168.99 -0.42 -13.10 16 5 C -0.26 -6.71 8.04 -15.06 -0.12 -6.83 16 6 H 0.08 2.25 7.63 -52.49 -0.40 1.85 16 7 C 0.01 0.27 4.85 -17.43 -0.08 0.18 16 8 N -0.90 -24.61 9.50 55.49 0.53 -24.08 16 9 Si 0.91 22.03 29.61 -169.99 -5.03 16.99 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.15 2.76 3.45 -67.95 -0.23 2.52 16 14 H 0.10 1.55 7.94 -51.93 -0.41 1.14 16 15 C -0.14 -2.37 6.75 -25.10 -0.17 -2.54 16 16 C 0.11 1.42 7.35 -3.12 -0.02 1.39 16 17 N -0.62 -9.26 2.42 -173.78 -0.42 -9.68 16 18 C 0.14 1.65 6.53 -5.19 -0.03 1.62 16 19 C 0.45 6.27 8.40 36.01 0.30 6.58 16 20 O -0.49 -9.29 17.19 -18.74 -0.32 -9.61 16 21 O -0.52 -5.50 13.42 -39.26 -0.53 -6.03 16 22 C 0.52 9.86 6.88 -10.86 -0.07 9.79 16 23 O -0.52 -11.59 17.58 5.56 0.10 -11.49 16 24 H 0.12 2.70 6.45 -51.93 -0.33 2.37 16 25 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.10 2.01 7.06 -51.93 -0.37 1.65 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.12 1.35 7.92 -51.93 -0.41 0.94 16 33 H 0.41 2.85 9.10 45.56 0.41 3.27 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -35.39 298.43 -4.34 -39.73 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -2.76 Total: 0.80 kcal Atomic # 6 Polarization: 24.53 SS G_CDS: -0.76 Total: 23.77 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.46 Total: -58.66 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.75 Total: -27.13 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.39 -4.34 -39.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702161322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.921 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds