Wall clock time and date at job start Mon Mar 30 2020 04:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46973 * 188.38432 * 3 2 1 5 5 C 1.36937 * 119.99895 * 264.19450 * 4 3 2 6 6 H 1.07998 * 120.00183 * 197.43587 * 5 4 3 7 7 C 1.38817 * 120.00139 * 17.42893 * 5 4 3 8 8 N 1.31620 * 119.99509 * 21.86704 * 7 5 4 9 9 Si 1.86792 * 120.00217 * 201.86749 * 7 5 4 10 10 H 1.48502 * 109.47125 * 59.99993 * 9 7 5 11 11 H 1.48504 * 109.47329 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47484 * 299.99932 * 9 7 5 13 13 C 1.46502 * 120.00611 * 84.18858 * 4 3 2 14 14 H 1.09004 * 110.53259 * 358.84693 * 13 4 3 15 15 C 1.54619 * 110.48966 * 236.23088 * 13 4 3 16 16 C 1.54478 * 101.76720 * 216.52280 * 15 13 4 17 17 N 1.46767 * 105.47234 * 25.41255 * 16 15 13 18 18 C 1.46502 * 124.34629 * 162.98073 * 17 16 15 19 19 C 1.50699 * 109.47175 * 270.02827 * 18 17 16 20 20 O 1.20818 * 119.99982 * 0.02562 * 19 18 17 21 21 O 1.34231 * 119.99592 * 180.02562 * 19 18 17 22 22 C 1.34420 * 111.29993 * 342.98914 * 17 16 15 23 23 O 1.21281 * 124.94148 * 180.66976 * 22 17 16 24 24 H 1.08996 * 109.47179 * 68.38032 * 3 2 1 25 25 H 1.09005 * 109.47235 * 308.38077 * 3 2 1 26 26 H 0.97002 * 119.99943 * 180.02562 * 8 7 5 27 27 H 1.09007 * 110.97345 * 334.64222 * 15 13 4 28 28 H 1.09003 * 110.97133 * 98.40192 * 15 13 4 29 29 H 1.09000 * 110.24677 * 144.41769 * 16 15 13 30 30 H 1.09000 * 110.24644 * 266.41576 * 16 15 13 31 31 H 1.09000 * 109.47124 * 30.03268 * 18 17 16 32 32 H 1.09005 * 109.46684 * 150.02572 * 18 17 16 33 33 H 0.96696 * 116.99826 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3673 0.2014 5 6 3.4366 2.1385 -0.8775 6 1 4.0487 3.0178 -0.7410 7 6 2.9956 1.7902 -2.1469 8 7 1.9390 1.0181 -2.2875 9 14 3.9018 2.4171 -3.6552 10 1 5.3082 1.9416 -3.6210 11 1 3.2365 1.9057 -4.8805 12 1 3.8814 3.9019 -3.6634 13 6 3.2185 1.9090 1.5570 14 1 2.8884 1.1759 2.2931 15 6 2.4049 3.2168 1.6930 16 6 3.3076 4.0538 2.6262 17 7 4.6659 3.5354 2.4255 18 6 5.8870 4.2415 2.8211 19 6 6.3560 5.1105 1.6827 20 8 5.7339 5.1376 0.6474 21 8 7.4650 5.8543 1.8191 22 6 4.6455 2.3296 1.8318 23 8 5.6279 1.6721 1.5607 24 1 2.9715 -0.3778 -0.9553 25 1 2.9716 -0.6373 0.8056 26 1 1.6310 0.7743 -3.1744 27 1 2.2854 3.7044 0.7255 28 1 1.4359 3.0271 2.1548 29 1 3.2613 5.1074 2.3504 30 1 3.0029 3.9212 3.6643 31 1 5.6810 4.8636 3.6921 32 1 6.6623 3.5161 3.0680 33 1 7.7262 6.3959 1.0618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702161322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:31 Heat of formation + Delta-G solvation = -80.836825 kcal Electronic energy + Delta-G solvation = -20925.902228 eV Core-core repulsion = 17566.319762 eV Total energy + Delta-G solvation = -3359.582465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72268 -40.69128 -38.01873 -37.30698 -36.93165 -36.10172 -33.93877 -32.34060 -29.08923 -28.60445 -27.87784 -24.64796 -23.25553 -22.17490 -20.34621 -19.34432 -19.11315 -17.95829 -17.88628 -17.53865 -17.13053 -16.73474 -16.52642 -15.87806 -15.37887 -15.00526 -14.66337 -14.41580 -14.13384 -13.96767 -13.66250 -13.42837 -13.24387 -13.03241 -12.90909 -12.76883 -12.64427 -12.50471 -12.25014 -12.00628 -11.76770 -11.73584 -11.64357 -11.05086 -10.51306 -9.75946 -9.02388 -7.99889 -5.35083 1.23423 1.39698 1.43651 1.45189 1.53233 2.04815 2.24418 2.45641 2.51101 2.58251 3.17689 3.57183 3.66558 3.90429 3.95348 4.22193 4.27188 4.31404 4.37164 4.40841 4.67794 4.76688 4.92225 5.17401 5.23978 5.42368 5.57491 5.61896 5.68733 6.10403 6.19270 6.98093 7.00645 7.31227 7.32871 7.68213 8.06211 9.06119 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018327 B = 0.008043 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.459463 B = 3480.582247 C = 4455.567110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C 0.265 3.735 3 C 0.258 3.742 4 N -0.572 5.572 5 C -0.243 4.243 6 H 0.059 0.941 7 C -0.031 4.031 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.135 3.865 14 H 0.126 0.874 15 C -0.140 4.140 16 C 0.117 3.883 17 N -0.612 5.612 18 C 0.135 3.865 19 C 0.452 3.548 20 O -0.549 6.549 21 O -0.510 6.510 22 C 0.512 3.488 23 O -0.562 6.562 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.252 0.748 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.172 0.828 32 H 0.129 0.871 33 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.989 7.643 14.925 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.219 5.219 2 C -0.053 4.053 3 C 0.129 3.871 4 N -0.291 5.291 5 C -0.372 4.372 6 H 0.076 0.924 7 C -0.227 4.227 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.216 1.216 13 C 0.025 3.975 14 H 0.144 0.856 15 C -0.179 4.179 16 C -0.005 4.005 17 N -0.347 5.347 18 C 0.012 3.988 19 C 0.294 3.706 20 O -0.439 6.439 21 O -0.323 6.323 22 C 0.299 3.701 23 O -0.439 6.439 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.190 0.810 32 H 0.146 0.854 33 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 6.556 7.051 14.683 17.558 hybrid contribution 0.939 0.931 -2.320 2.670 sum 7.495 7.981 12.363 16.514 Atomic orbital electron populations 1.80812 1.15309 1.11402 1.14382 1.30777 0.96448 0.89893 0.88179 1.18454 0.79319 0.86222 1.03119 1.43867 1.73552 1.10945 1.00724 1.18983 1.24361 1.08072 0.85831 0.92358 1.25220 0.97001 1.00868 0.99631 1.70001 1.22260 1.41713 1.22338 0.85607 0.78621 0.77523 0.80242 1.21295 1.21544 1.21617 1.21340 0.91030 0.97021 0.88159 0.85621 1.22953 0.99244 0.95645 1.00101 1.22270 0.78659 0.98471 1.01123 1.48075 1.07289 1.18637 1.60703 1.21067 0.88254 0.95921 0.93607 1.24881 0.77701 0.78177 0.89828 1.90827 1.57042 1.64202 1.31797 1.84464 1.42411 1.56356 1.49028 1.22149 0.92937 0.80970 0.74046 1.90598 1.41237 1.59110 1.52917 0.88710 0.87509 0.93789 0.92654 0.88292 0.90427 0.86324 0.81037 0.85368 0.71534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -26.53 18.54 20.01 0.37 -26.16 16 2 C 0.27 12.18 13.66 89.44 1.22 13.40 16 3 C 0.26 10.92 5.36 84.57 0.45 11.38 16 4 N -0.57 -25.79 2.51 -688.57 -1.73 -27.53 16 5 C -0.24 -12.81 8.04 84.03 0.68 -12.13 16 6 H 0.06 3.33 7.63 -2.91 -0.02 3.31 16 7 C -0.03 -1.68 4.85 84.86 0.41 -1.26 16 8 N -0.92 -51.02 9.50 21.65 0.21 -50.81 16 9 Si 0.95 46.36 29.61 68.60 2.03 48.39 16 10 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 13 C 0.14 4.81 3.45 44.98 0.16 4.97 16 14 H 0.13 3.67 7.94 -2.38 -0.02 3.65 16 15 C -0.14 -4.35 6.75 31.65 0.21 -4.14 16 16 C 0.12 2.56 7.35 86.83 0.64 3.20 16 17 N -0.61 -16.66 2.42 -822.30 -1.99 -18.65 16 18 C 0.14 2.71 6.53 85.63 0.56 3.27 16 19 C 0.45 11.79 8.40 71.24 0.60 12.38 16 20 O -0.55 -20.78 17.19 21.99 0.38 -20.40 16 21 O -0.51 -9.38 13.42 -51.42 -0.69 -10.07 16 22 C 0.51 18.74 6.88 87.90 0.61 19.34 16 23 O -0.56 -24.87 17.58 -3.03 -0.05 -24.93 16 24 H 0.10 4.47 6.45 -2.39 -0.02 4.45 16 25 H 0.11 3.54 8.08 -2.38 -0.02 3.53 16 26 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.05 2.24 7.06 -2.38 -0.02 2.22 16 28 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.13 2.47 7.92 -2.38 -0.02 2.46 16 33 H 0.42 5.05 9.10 -74.06 -0.67 4.38 16 Total: -1.00 -79.86 298.43 4.54 -75.32 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 0.49 Total: 4.44 kcal Atomic # 6 Polarization: 44.87 SS G_CDS: 5.53 Total: 50.40 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -3.14 Total: -123.15 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.37 Total: -55.40 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -79.86 4.54 -75.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702161322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.514 kcal (2) G-P(sol) polarization free energy of solvation -79.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds