Wall clock time and date at job start Mon Mar 30 2020 04:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47168 * 202.22634 * 3 2 1 5 5 C 1.36806 * 119.99463 * 84.81669 * 4 3 2 6 6 H 1.07998 * 120.00290 * 359.19014 * 5 4 3 7 7 C 1.38777 * 119.99615 * 178.92074 * 5 4 3 8 8 N 1.31610 * 120.00341 * 19.67162 * 7 5 4 9 9 Si 1.86805 * 119.99834 * 199.67151 * 7 5 4 10 10 H 1.48504 * 109.47149 * 59.99810 * 9 7 5 11 11 H 1.48501 * 109.46943 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46926 * 300.00063 * 9 7 5 13 13 C 1.39463 * 120.00414 * 264.81935 * 4 3 2 14 14 C 1.39217 * 120.11294 * 89.72447 * 13 4 3 15 15 F 1.35109 * 120.04943 * 359.97438 * 14 13 4 16 16 C 1.38281 * 119.89432 * 179.74495 * 14 13 4 17 17 C 1.38312 * 120.10549 * 0.50518 * 16 14 13 18 18 C 1.50696 * 119.89178 * 179.74485 * 17 16 14 19 19 N 1.46902 * 109.47110 * 270.02369 * 18 17 16 20 20 C 1.38321 * 120.21806 * 359.77050 * 17 16 14 21 21 C 1.38281 * 120.10449 * 359.97438 * 20 17 16 22 22 F 1.35098 * 120.04754 * 180.02562 * 21 20 17 23 23 H 1.09005 * 109.47032 * 82.22946 * 3 2 1 24 24 H 1.08999 * 109.47676 * 322.23129 * 3 2 1 25 25 H 0.97003 * 120.00173 * 179.97438 * 8 7 5 26 26 H 1.07995 * 119.94352 * 180.27520 * 16 14 13 27 27 H 1.09001 * 109.47271 * 30.02466 * 18 17 16 28 28 H 1.08998 * 109.47408 * 150.02653 * 18 17 16 29 29 H 1.00908 * 111.00200 * 179.97438 * 19 18 17 30 30 H 1.00900 * 111.00210 * 303.95455 * 19 18 17 31 31 H 1.07998 * 119.94609 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.2794 0.5225 5 6 3.2227 1.4631 1.8722 6 1 2.9510 0.6700 2.5530 7 6 3.7060 2.6665 2.3662 8 7 3.6780 3.7457 1.6134 9 14 4.3962 2.7547 4.0998 10 1 5.5501 1.8279 4.2210 11 1 4.8428 4.1420 4.3848 12 1 3.3437 2.3644 5.0721 13 6 3.4306 2.3096 -0.3560 14 6 2.4659 3.2328 -0.7499 15 9 1.2024 3.1324 -0.2820 16 6 2.8041 4.2556 -1.6169 17 6 4.0959 4.3560 -2.1010 18 6 4.4578 5.4691 -3.0502 19 7 4.2349 5.0255 -4.4328 20 6 5.0565 3.4378 -1.7171 21 6 4.7293 2.4146 -0.8464 22 9 5.6686 1.5188 -0.4718 23 1 2.9714 -0.1381 -1.0183 24 1 2.9718 -0.8115 0.6294 25 1 4.0154 4.5870 1.9589 26 1 2.0575 4.9748 -1.9195 27 1 3.8356 6.3398 -2.8432 28 1 5.5071 5.7327 -2.9179 29 1 4.4701 5.7550 -5.0891 30 1 4.7516 4.1814 -4.6295 31 1 6.0637 3.5201 -2.0981 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723161671.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:40 Heat of formation + Delta-G solvation = -7.868111 kcal Electronic energy + Delta-G solvation = -20580.917231 eV Core-core repulsion = 17113.411410 eV Total energy + Delta-G solvation = -3467.505820 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.84897 -47.68715 -38.43907 -36.66454 -35.20869 -33.69215 -31.68363 -29.35704 -29.29360 -26.97926 -25.03773 -22.71837 -21.90709 -20.54413 -17.94597 -17.22337 -16.80199 -16.26438 -15.57193 -15.36853 -14.79581 -14.71499 -14.49915 -14.17916 -14.05562 -13.92007 -13.80169 -13.14067 -12.92828 -12.41308 -12.30841 -11.86125 -11.53855 -11.42177 -11.10392 -11.06048 -10.90043 -10.80392 -10.67383 -10.26886 -10.08633 -9.13612 -8.63547 -7.74769 -7.71912 -7.53750 -5.93550 -3.53418 2.01977 2.08303 3.29148 3.31538 3.35279 3.47056 3.55559 4.22280 4.35478 4.77114 4.82623 4.96932 5.08393 5.23641 5.24285 5.38238 5.71492 5.80434 5.88002 5.88953 5.91950 6.12958 6.56895 6.66396 6.99752 7.09036 7.10674 7.23283 7.45785 7.50542 7.62513 7.99610 8.34625 8.89818 9.39888 9.76285 10.97642 Molecular weight = 267.09amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.009337 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.582712 B = 2998.258356 C = 3733.174999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.196 3.804 3 C 0.235 3.765 4 N -0.544 5.544 5 C -0.279 4.279 6 H 0.092 0.908 7 C 0.013 3.987 8 N -0.888 5.888 9 Si 0.915 3.085 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.281 1.281 13 C 0.214 3.786 14 C 0.149 3.851 15 F -0.135 7.135 16 C -0.145 4.145 17 C -0.066 4.066 18 C 0.111 3.889 19 N -0.846 5.846 20 C -0.165 4.165 21 C 0.108 3.892 22 F -0.139 7.139 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.263 0.737 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.337 0.663 30 H 0.341 0.659 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 0.465 -8.768 10.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.125 4.125 3 C 0.105 3.895 4 N -0.259 5.259 5 C -0.405 4.405 6 H 0.110 0.890 7 C -0.187 4.187 8 N -0.529 5.529 9 Si 0.743 3.257 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.207 1.207 13 C 0.116 3.884 14 C 0.126 3.874 15 F -0.113 7.113 16 C -0.166 4.166 17 C -0.067 4.067 18 C -0.018 4.018 19 N -0.376 5.376 20 C -0.186 4.186 21 C 0.086 3.914 22 F -0.117 7.117 23 H 0.112 0.888 24 H 0.122 0.878 25 H 0.075 0.925 26 H 0.137 0.863 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.035 0.534 -8.391 8.939 hybrid contribution 1.701 0.485 1.245 2.163 sum 4.735 1.019 -7.147 8.633 Atomic orbital electron populations 1.80972 1.14095 1.09195 1.09894 1.31343 0.96984 0.92167 0.91981 1.18599 0.79950 0.90101 1.00817 1.41381 1.72947 1.08402 1.03183 1.19301 1.40505 1.00404 0.80314 0.88999 1.24870 0.99843 0.94937 0.99089 1.69900 1.47076 0.99208 1.36756 0.86156 0.79432 0.77007 0.83060 1.20494 1.21409 1.20740 1.16760 0.90046 0.90592 0.90959 1.17795 0.79646 0.95792 0.94150 1.91438 1.36984 1.95632 1.87254 1.20558 0.96766 0.98948 1.00317 1.18824 0.92608 0.96581 0.98673 1.20562 0.98599 0.95654 0.87034 1.58724 1.66257 1.09358 1.03257 1.20517 0.99535 0.96574 1.01926 1.17757 0.85785 0.89699 0.98200 1.91405 1.63630 1.66290 1.90418 0.88835 0.87752 0.92536 0.86289 0.90434 0.94926 0.85083 0.84608 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.24 18.54 42.15 0.78 -9.45 16 2 C 0.20 3.95 15.60 -20.76 -0.32 3.62 16 3 C 0.24 4.22 6.15 -6.83 -0.04 4.18 16 4 N -0.54 -12.37 2.19 -116.14 -0.25 -12.63 16 5 C -0.28 -7.02 9.72 -15.13 -0.15 -7.16 16 6 H 0.09 2.22 7.90 -52.49 -0.41 1.81 16 7 C 0.01 0.33 5.30 -17.45 -0.09 0.24 16 8 N -0.89 -23.70 9.81 55.49 0.54 -23.15 16 9 Si 0.91 20.88 29.60 -169.99 -5.03 15.85 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.21 4.84 2.86 -83.66 -0.24 4.60 16 14 C 0.15 3.38 5.94 -39.20 -0.23 3.15 16 15 F -0.13 -3.37 16.96 2.25 0.04 -3.34 16 16 C -0.15 -2.86 9.67 -39.54 -0.38 -3.24 16 17 C -0.07 -1.13 5.40 -104.57 -0.56 -1.70 16 18 C 0.11 1.48 6.91 -4.98 -0.03 1.44 16 19 N -0.85 -9.70 9.61 -11.41 -0.11 -9.81 16 20 C -0.17 -2.97 9.67 -39.54 -0.38 -3.35 16 21 C 0.11 2.26 7.05 -39.20 -0.28 1.98 16 22 F -0.14 -2.93 17.08 2.25 0.04 -2.90 16 23 H 0.09 1.40 8.01 -51.93 -0.42 0.99 16 24 H 0.10 1.59 8.08 -51.93 -0.42 1.17 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 28 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.34 2.96 9.08 -39.29 -0.36 2.61 16 30 H 0.34 3.66 8.99 -39.29 -0.35 3.30 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 292.01 15.07 4.40 4.40 Total: -1.00 -30.21 292.01 -5.09 -35.30 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -2.78 Total: 1.98 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -2.72 Total: 3.76 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.96 Total: -55.05 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.08 Total: -6.23 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.21 -5.09 -35.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723161671.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.435 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds