Wall clock time and date at job start Mon Mar 30 2020 04:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47168 * 202.22634 * 3 2 1 5 5 C 1.36806 * 119.99463 * 84.81669 * 4 3 2 6 6 H 1.07998 * 120.00290 * 359.19014 * 5 4 3 7 7 C 1.38777 * 119.99615 * 178.92074 * 5 4 3 8 8 N 1.31610 * 120.00341 * 19.67162 * 7 5 4 9 9 Si 1.86805 * 119.99834 * 199.67151 * 7 5 4 10 10 H 1.48504 * 109.47149 * 59.99810 * 9 7 5 11 11 H 1.48501 * 109.46943 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46926 * 300.00063 * 9 7 5 13 13 C 1.39463 * 120.00414 * 264.81935 * 4 3 2 14 14 C 1.39217 * 120.11294 * 89.72447 * 13 4 3 15 15 F 1.35109 * 120.04943 * 359.97438 * 14 13 4 16 16 C 1.38281 * 119.89432 * 179.74495 * 14 13 4 17 17 C 1.38312 * 120.10549 * 0.50518 * 16 14 13 18 18 C 1.50696 * 119.89178 * 179.74485 * 17 16 14 19 19 N 1.46902 * 109.47110 * 270.02369 * 18 17 16 20 20 C 1.38321 * 120.21806 * 359.77050 * 17 16 14 21 21 C 1.38281 * 120.10449 * 359.97438 * 20 17 16 22 22 F 1.35098 * 120.04754 * 180.02562 * 21 20 17 23 23 H 1.09005 * 109.47032 * 82.22946 * 3 2 1 24 24 H 1.08999 * 109.47676 * 322.23129 * 3 2 1 25 25 H 0.97003 * 120.00173 * 179.97438 * 8 7 5 26 26 H 1.07995 * 119.94352 * 180.27520 * 16 14 13 27 27 H 1.09001 * 109.47271 * 30.02466 * 18 17 16 28 28 H 1.08998 * 109.47408 * 150.02653 * 18 17 16 29 29 H 1.00908 * 111.00200 * 179.97438 * 19 18 17 30 30 H 1.00900 * 111.00210 * 303.95455 * 19 18 17 31 31 H 1.07998 * 119.94609 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.2794 0.5225 5 6 3.2227 1.4631 1.8722 6 1 2.9510 0.6700 2.5530 7 6 3.7060 2.6665 2.3662 8 7 3.6780 3.7457 1.6134 9 14 4.3962 2.7547 4.0998 10 1 5.5501 1.8279 4.2210 11 1 4.8428 4.1420 4.3848 12 1 3.3437 2.3644 5.0721 13 6 3.4306 2.3096 -0.3560 14 6 2.4659 3.2328 -0.7499 15 9 1.2024 3.1324 -0.2820 16 6 2.8041 4.2556 -1.6169 17 6 4.0959 4.3560 -2.1010 18 6 4.4578 5.4691 -3.0502 19 7 4.2349 5.0255 -4.4328 20 6 5.0565 3.4378 -1.7171 21 6 4.7293 2.4146 -0.8464 22 9 5.6686 1.5188 -0.4718 23 1 2.9714 -0.1381 -1.0183 24 1 2.9718 -0.8115 0.6294 25 1 4.0154 4.5870 1.9589 26 1 2.0575 4.9748 -1.9195 27 1 3.8356 6.3398 -2.8432 28 1 5.5071 5.7327 -2.9179 29 1 4.4701 5.7550 -5.0891 30 1 4.7516 4.1814 -4.6295 31 1 6.0637 3.5201 -2.0981 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723161671.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:39 Heat of formation + Delta-G solvation = -26.861103 kcal Electronic energy + Delta-G solvation = -20581.740828 eV Core-core repulsion = 17113.411410 eV Total energy + Delta-G solvation = -3468.329418 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.48466 -49.44335 -39.95956 -38.20874 -36.82285 -34.90290 -33.50734 -30.87892 -30.70962 -28.62188 -26.49260 -24.24852 -23.47664 -22.04365 -19.69136 -18.81892 -18.27070 -17.85438 -17.11235 -16.61325 -16.47338 -16.26754 -16.15595 -15.79688 -15.57596 -15.48761 -15.20714 -14.76035 -14.34201 -14.01857 -13.71639 -13.53433 -13.26069 -12.92312 -12.76757 -12.64097 -12.46669 -12.43622 -12.21214 -11.93170 -11.85705 -10.95990 -9.56860 -9.43158 -9.29178 -9.20594 -7.79291 -5.43304 0.51033 0.52354 1.47889 1.50370 1.55284 1.82011 1.96726 2.48935 2.74737 3.14845 3.35967 3.46403 3.50326 3.83847 3.96273 4.06167 4.38765 4.44170 4.51461 4.58764 4.76696 4.80042 5.08279 5.21720 5.46118 5.51418 5.57407 5.67904 5.96021 6.25099 6.32098 6.74800 6.75340 7.05139 7.62768 7.92970 9.05121 Molecular weight = 267.09amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.009337 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.582712 B = 2998.258356 C = 3733.174999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.212 3.788 3 C 0.230 3.770 4 N -0.557 5.557 5 C -0.284 4.284 6 H 0.095 0.905 7 C -0.035 4.035 8 N -0.907 5.907 9 Si 0.966 3.034 10 H -0.274 1.274 11 H -0.296 1.296 12 H -0.283 1.283 13 C 0.194 3.806 14 C 0.115 3.885 15 F -0.159 7.159 16 C -0.149 4.149 17 C -0.054 4.054 18 C 0.116 3.884 19 N -0.852 5.852 20 C -0.155 4.155 21 C 0.092 3.908 22 F -0.143 7.143 23 H 0.126 0.874 24 H 0.136 0.864 25 H 0.253 0.747 26 H 0.128 0.872 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.355 0.645 30 H 0.348 0.652 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.057 0.710 -9.954 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.107 4.107 3 C 0.101 3.899 4 N -0.273 5.273 5 C -0.411 4.411 6 H 0.113 0.887 7 C -0.232 4.232 8 N -0.549 5.549 9 Si 0.795 3.205 10 H -0.199 1.199 11 H -0.223 1.223 12 H -0.210 1.210 13 C 0.098 3.902 14 C 0.093 3.907 15 F -0.138 7.138 16 C -0.170 4.170 17 C -0.055 4.055 18 C -0.014 4.014 19 N -0.384 5.384 20 C -0.175 4.175 21 C 0.071 3.929 22 F -0.122 7.122 23 H 0.144 0.856 24 H 0.153 0.847 25 H 0.064 0.936 26 H 0.146 0.854 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.170 0.830 30 H 0.161 0.839 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.667 0.761 -9.610 10.710 hybrid contribution 1.207 0.415 1.521 1.985 sum 5.874 1.177 -8.089 10.066 Atomic orbital electron populations 1.80975 1.15414 1.10498 1.11468 1.31783 0.97356 0.90924 0.90683 1.19134 0.78278 0.89228 1.03263 1.41568 1.73172 1.09896 1.02668 1.19576 1.39496 1.00177 0.81822 0.88707 1.25495 1.00874 0.95099 1.01770 1.70091 1.48144 0.99014 1.37697 0.85356 0.78772 0.76334 0.80070 1.19928 1.22272 1.20960 1.16955 0.90682 0.91032 0.91580 1.18174 0.79101 0.97398 0.96019 1.91367 1.38529 1.95931 1.87923 1.20811 0.98196 0.98234 0.99734 1.19267 0.91229 0.96882 0.98079 1.20527 0.99837 0.93966 0.87046 1.58627 1.66728 1.10384 1.02642 1.20882 1.01118 0.95079 1.00374 1.17950 0.85239 0.90590 0.99165 1.91386 1.63560 1.66598 1.90646 0.85615 0.84698 0.93627 0.85417 0.90046 0.92871 0.83044 0.83938 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.44 18.54 20.01 0.37 -22.07 16 2 C 0.21 8.48 15.60 89.44 1.40 9.87 16 3 C 0.23 7.93 6.15 84.57 0.52 8.45 16 4 N -0.56 -25.03 2.19 -521.34 -1.14 -26.18 16 5 C -0.28 -14.16 9.72 84.05 0.82 -13.34 16 6 H 0.10 4.53 7.90 -2.91 -0.02 4.51 16 7 C -0.04 -1.81 5.30 84.86 0.45 -1.36 16 8 N -0.91 -48.65 9.81 21.64 0.21 -48.44 16 9 Si 0.97 42.97 29.60 68.60 2.03 45.00 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.19 8.69 2.86 38.40 0.11 8.80 16 14 C 0.11 5.24 5.94 22.52 0.13 5.38 16 15 F -0.16 -8.15 16.96 44.97 0.76 -7.39 16 16 C -0.15 -5.74 9.67 22.30 0.22 -5.52 16 17 C -0.05 -1.71 5.40 -19.83 -0.11 -1.82 16 18 C 0.12 2.68 6.91 85.56 0.59 3.27 16 19 N -0.85 -16.56 9.61 -190.01 -1.83 -18.39 16 20 C -0.15 -5.15 9.67 22.30 0.22 -4.93 16 21 C 0.09 3.74 7.05 22.52 0.16 3.90 16 22 F -0.14 -5.83 17.08 44.97 0.77 -5.07 16 23 H 0.13 3.52 8.01 -2.38 -0.02 3.50 16 24 H 0.14 3.82 8.08 -2.39 -0.02 3.80 16 25 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 26 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 28 H 0.05 1.04 8.08 -2.39 -0.02 1.02 16 29 H 0.35 4.94 9.08 -89.69 -0.81 4.13 16 30 H 0.35 6.19 8.99 -89.69 -0.81 5.38 16 31 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -65.29 292.01 5.26 -60.04 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -0.42 Total: 9.81 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 4.50 Total: 12.68 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -2.39 Total: -115.07 kcal Atomic # 9 Polarization: -13.98 SS G_CDS: 1.53 Total: -12.45 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -65.29 5.26 -60.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723161671.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.176 kcal (2) G-P(sol) polarization free energy of solvation -65.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds