Wall clock time and date at job start Mon Mar 30 2020 04:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34644 * 116.99644 * 2 1 4 4 O 1.21410 * 120.00164 * 0.02562 * 3 2 1 5 5 C 1.48263 * 120.00123 * 180.02562 * 3 2 1 6 6 C 1.41733 * 126.81138 * 180.02562 * 5 3 2 7 7 C 1.37257 * 103.78370 * 180.27613 * 6 5 3 8 8 C 1.46654 * 126.86718 * 179.72460 * 7 6 5 9 9 N 1.30067 * 120.00008 * 179.97438 * 8 7 6 10 10 N 1.40098 * 119.99774 * 180.02562 * 9 8 7 11 11 C 1.46502 * 119.99608 * 180.02562 * 10 9 8 12 12 H 1.08995 * 109.47616 * 30.00176 * 11 10 9 13 13 C 1.53007 * 109.47256 * 269.99889 * 11 10 9 14 14 C 1.50703 * 109.47224 * 150.00167 * 11 10 9 15 15 H 1.07995 * 119.99738 * 359.97438 * 14 11 10 16 16 C 1.37872 * 120.00316 * 179.97438 * 14 11 10 17 17 N 1.31524 * 119.99808 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00279 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.46822 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47467 * 119.99895 * 18 16 14 21 21 H 1.48502 * 109.47058 * 239.99799 * 18 16 14 22 22 O 1.34611 * 106.26191 * 359.62774 * 7 6 5 23 23 N 1.20863 * 111.70423 * 0.40608 * 22 7 6 24 24 H 1.08998 * 109.46622 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47224 * 299.99104 * 1 2 3 26 26 H 1.08993 * 109.47432 * 59.99909 * 1 2 3 27 27 H 1.08002 * 128.10574 * 0.02562 * 6 5 3 28 28 H 1.08000 * 120.00107 * 0.02562 * 8 7 6 29 29 H 0.96994 * 120.00319 * 0.02562 * 10 9 8 30 30 H 1.08992 * 109.47170 * 180.02562 * 13 11 10 31 31 H 1.08995 * 109.47042 * 300.00639 * 13 11 10 32 32 H 1.09001 * 109.46855 * 60.00039 * 13 11 10 33 33 H 0.97000 * 119.99626 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4019 2.2179 0.0005 5 6 3.5438 1.2774 -0.0006 6 6 4.3324 2.4551 -0.0001 7 6 5.6220 1.9852 -0.0074 8 6 6.8503 2.7863 -0.0158 9 7 8.0104 2.1980 -0.0217 10 7 9.1838 2.9634 -0.0292 11 6 10.4904 2.3007 -0.0363 12 1 10.4090 1.3423 -0.5489 13 6 10.9538 2.0712 1.4037 14 6 11.4908 3.1704 -0.7533 15 1 11.1839 4.1213 -1.1630 16 6 12.7978 2.7521 -0.8861 17 7 13.1716 1.5942 -0.3867 18 14 14.0380 3.8304 -1.7742 19 1 13.3705 5.0730 -2.2385 20 1 15.1444 4.1790 -0.8471 21 1 14.5847 3.0961 -2.9434 22 8 5.5337 0.6420 -0.0031 23 7 4.3839 0.2696 -0.0024 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.9971 3.4818 0.0010 28 1 6.7918 3.8647 -0.0163 29 1 9.1312 3.9319 -0.0296 30 1 11.9260 1.5787 1.3984 31 1 11.0352 3.0297 1.9163 32 1 10.2302 1.4422 1.9223 33 1 14.0913 1.3001 -0.4799 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814883608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:00 Heat of formation + Delta-G solvation = 23.299010 kcal Electronic energy + Delta-G solvation = -18800.331392 eV Core-core repulsion = 15445.264595 eV Total energy + Delta-G solvation = -3355.066797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.98047 -40.55677 -36.85977 -36.81630 -34.46906 -34.10452 -32.43353 -30.76983 -28.38488 -27.56815 -25.37608 -25.07908 -23.39726 -22.49518 -20.60715 -20.24759 -17.98384 -17.78916 -17.60311 -16.60157 -16.54931 -16.48545 -16.03725 -15.13591 -14.57157 -13.91011 -13.65713 -13.65036 -13.28851 -12.84484 -12.63856 -12.50090 -11.73196 -11.68456 -11.16243 -11.16061 -11.13529 -11.04567 -10.81390 -10.65420 -10.39804 -10.32202 -9.96823 -9.61841 -9.13407 -8.61618 -7.20379 -6.24218 -4.33593 0.78100 1.14924 2.14084 2.65436 2.88190 3.02436 3.17921 3.25567 3.28056 3.46395 3.81792 4.26727 4.63077 4.76299 4.85206 4.88894 5.04770 5.09175 5.18880 5.30348 5.68819 5.82428 5.89616 6.32468 6.72271 6.86884 6.99197 7.28209 7.42242 7.61437 7.67763 7.92624 8.00232 8.10495 8.71111 8.93841 9.33700 10.81786 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.058303 B = 0.002804 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.135039 B = 9982.803940 C =10155.305810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.557 3.443 4 O -0.490 6.490 5 C -0.018 4.018 6 C -0.187 4.187 7 C 0.075 3.925 8 C -0.012 4.012 9 N -0.158 5.158 10 N -0.597 5.597 11 C 0.291 3.709 12 H 0.048 0.952 13 C -0.152 4.152 14 C -0.534 4.534 15 H 0.062 0.938 16 C 0.068 3.932 17 N -0.883 5.883 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.282 1.282 22 O 0.144 5.856 23 N -0.317 5.317 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.185 0.815 28 H 0.140 0.860 29 H 0.375 0.625 30 H 0.093 0.907 31 H 0.028 0.972 32 H 0.015 0.985 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.443 0.479 1.406 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.258 6.258 3 C 0.399 3.601 4 O -0.376 6.376 5 C -0.173 4.173 6 C -0.214 4.214 7 C 0.010 3.990 8 C -0.217 4.217 9 N 0.023 4.977 10 N -0.335 5.335 11 C 0.189 3.811 12 H 0.066 0.934 13 C -0.211 4.211 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.136 4.136 17 N -0.521 5.521 18 Si 0.732 3.268 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 O 0.065 5.935 23 N -0.016 5.016 24 H 0.124 0.876 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.203 0.797 28 H 0.157 0.843 29 H 0.212 0.788 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.143 -1.672 1.421 18.276 hybrid contribution 0.127 2.612 -0.423 2.649 sum -18.016 0.941 0.998 18.068 Atomic orbital electron populations 1.23379 0.75315 1.04204 1.02859 1.86626 1.23890 1.31656 1.83671 1.19550 0.86002 0.81880 0.72687 1.90857 1.65342 1.36018 1.45337 1.21938 0.92543 0.91329 1.11471 1.22359 0.89254 1.00098 1.09643 1.22098 0.94450 0.82004 1.00425 1.22186 0.87151 0.95532 1.16876 1.74165 0.94614 1.28590 1.00320 1.49346 1.00956 1.05904 1.77270 1.18760 0.74545 0.94208 0.93547 0.93419 1.22217 1.02533 0.99127 0.97243 1.21211 0.93874 1.05306 1.36967 0.91936 1.24864 0.98111 0.95278 0.95324 1.69895 1.18260 1.19533 1.44379 0.86334 0.80835 0.80264 0.79333 1.19724 1.20771 1.20757 1.85059 1.21390 1.22164 1.64916 1.74321 0.89549 1.23016 1.14717 0.87588 0.91510 0.91496 0.79741 0.84303 0.78775 0.88833 0.95280 0.96563 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.34 -4.08 10.58 -40.34 -0.43 -4.50 16 3 C 0.56 7.39 7.99 34.85 0.28 7.67 16 4 O -0.49 -6.94 16.73 -19.20 -0.32 -7.26 16 5 C -0.02 -0.25 7.21 -82.68 -0.60 -0.85 16 6 C -0.19 -2.31 10.97 -38.60 -0.42 -2.73 16 7 C 0.07 1.05 7.29 -36.54 -0.27 0.78 16 8 C -0.01 -0.17 10.98 -14.90 -0.16 -0.34 16 9 N -0.16 -2.91 11.49 32.01 0.37 -2.54 16 10 N -0.60 -11.88 6.10 -5.88 -0.04 -11.92 16 11 C 0.29 6.92 3.23 -69.08 -0.22 6.69 16 12 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.15 -3.51 9.29 37.16 0.35 -3.17 16 14 C -0.53 -13.51 8.74 -34.44 -0.30 -13.81 16 15 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 16 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.88 -23.65 11.32 55.43 0.63 -23.03 16 18 Si 0.91 19.93 29.54 -169.99 -5.02 14.91 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 O 0.14 2.27 11.21 15.64 0.18 2.44 16 23 N -0.32 -4.89 12.10 33.35 0.40 -4.49 16 24 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.14 1.59 8.03 -52.49 -0.42 1.17 16 29 H 0.38 6.65 8.58 -182.61 -1.57 5.08 16 30 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 307.61 15.07 4.64 4.64 Total: -1.00 -28.55 307.61 -4.78 -33.33 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.81 Total: 1.18 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.38 Total: -2.76 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 1.36 Total: -41.98 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.57 Total: -9.32 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.55 -4.78 -33.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.630 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds