Wall clock time and date at job start Mon Mar 30 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00159 * 2 1 4 4 H 1.08998 * 115.54881 * 4.33750 * 3 2 1 5 5 C 1.53069 * 117.51642 * 218.61112 * 3 2 1 6 6 C 1.53000 * 59.98584 * 252.52365 * 5 3 2 7 7 H 1.09002 * 117.49833 * 107.50105 * 6 5 3 8 8 C 1.50697 * 117.50034 * 252.49893 * 6 5 3 9 9 O 1.21286 * 120.00074 * 68.74360 * 8 6 5 10 10 N 1.34775 * 120.00215 * 248.74477 * 8 6 5 11 11 C 1.46502 * 120.00324 * 179.97438 * 10 8 6 12 12 H 1.08994 * 109.46870 * 35.00663 * 11 10 8 13 13 C 1.50701 * 109.47079 * 155.00002 * 11 10 8 14 14 H 1.08006 * 119.99773 * 0.02562 * 13 11 10 15 15 C 1.37875 * 119.99982 * 179.97438 * 13 11 10 16 16 N 1.31516 * 120.00096 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99846 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46944 * 60.00431 * 17 15 13 19 19 H 1.48501 * 109.46720 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47078 * 300.00286 * 17 15 13 21 21 C 1.52995 * 109.47063 * 275.00113 * 11 10 8 22 22 F 1.39897 * 109.46968 * 60.00274 * 21 11 10 23 23 F 1.39906 * 109.46658 * 179.97438 * 21 11 10 24 24 F 1.39897 * 109.47325 * 299.99966 * 21 11 10 25 25 H 1.09001 * 109.47769 * 59.99329 * 1 2 3 26 26 H 1.09003 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46579 * 299.99347 * 1 2 3 28 28 H 1.09008 * 117.49334 * 145.03921 * 5 3 2 29 29 H 1.08999 * 117.51639 * 0.02562 * 5 3 2 30 30 H 0.97007 * 119.99741 * 0.02562 * 10 8 6 31 31 H 0.97001 * 119.99906 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3057 2.1337 0.0744 5 6 3.2670 1.5200 -0.8471 6 6 3.3713 1.4727 0.6786 7 1 3.8234 0.5870 1.1249 8 6 3.6351 2.7700 1.3985 9 8 2.7831 3.6327 1.4256 10 7 4.8180 2.9717 2.0123 11 6 5.0747 4.2331 2.7117 12 1 4.1522 4.5880 3.1711 13 6 6.1151 4.0127 3.7795 14 1 6.5426 3.0312 3.9225 15 6 6.5218 5.0642 4.5731 16 7 6.0016 6.2594 4.3987 17 14 7.8120 4.7911 5.8962 18 1 9.0685 4.3073 5.2699 19 1 8.0721 6.0697 6.6052 20 1 7.3204 3.7791 6.8655 21 6 5.5814 5.2758 1.7134 22 9 4.6156 5.4804 0.7222 23 9 5.8260 6.4806 2.3813 24 9 6.7655 4.8202 1.1238 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 3.3888 2.4896 -1.3301 29 1 3.6502 0.6655 -1.4049 30 1 5.4996 2.2818 1.9903 31 1 6.2875 6.9991 4.9573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830203981.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:57 Heat of formation + Delta-G solvation = -210.891731 kcal Electronic energy + Delta-G solvation = -21251.945228 eV Core-core repulsion = 17312.573667 eV Total energy + Delta-G solvation = -3939.371561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.43649 -48.07098 -47.74468 -41.02325 -39.06463 -36.61599 -35.70625 -34.46014 -30.51752 -27.59744 -26.65275 -25.42746 -23.23201 -22.87631 -21.31785 -19.42034 -18.89342 -18.70670 -18.55962 -17.93707 -16.94993 -16.93069 -16.54154 -15.95031 -15.62430 -15.54603 -14.98842 -14.95425 -14.53477 -14.46830 -14.30639 -14.05133 -13.91277 -13.74610 -13.37723 -13.06285 -12.79778 -12.61989 -12.40904 -12.28111 -12.21962 -11.63896 -11.60378 -10.93601 -10.68958 -10.23822 -10.09685 -8.22417 -6.53721 1.44383 1.46957 1.50654 1.57585 1.98623 2.36243 2.48719 2.68994 2.87015 2.93363 3.63649 3.72999 3.78980 3.88257 4.06108 4.09649 4.22678 4.44711 4.55839 4.62582 4.80480 4.85211 4.88298 5.00126 5.38170 5.52779 5.63234 6.14693 6.50746 6.68171 7.15071 7.30972 8.70122 Molecular weight = 267.09amu Principal moments of inertia in cm(-1) A = 0.029209 B = 0.005634 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.381571 B = 4968.404758 C = 5411.037501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.370 6.370 3 C 0.050 3.950 4 H 0.114 0.886 5 C -0.137 4.137 6 C -0.196 4.196 7 H 0.150 0.850 8 C 0.532 3.468 9 O -0.581 6.581 10 N -0.700 5.700 11 C 0.250 3.750 12 H 0.047 0.953 13 C -0.563 4.563 14 H 0.093 0.907 15 C 0.015 3.985 16 N -0.875 5.875 17 Si 0.984 3.016 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.263 1.263 21 C 0.414 3.586 22 F -0.219 7.219 23 F -0.151 7.151 24 F -0.202 7.202 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.137 0.863 30 H 0.415 0.585 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 -10.712 -6.972 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.288 6.288 3 C -0.009 4.009 4 H 0.132 0.868 5 C -0.174 4.174 6 C -0.217 4.217 7 H 0.168 0.832 8 C 0.320 3.680 9 O -0.461 6.461 10 N -0.350 5.350 11 C 0.143 3.857 12 H 0.065 0.935 13 C -0.600 4.600 14 H 0.111 0.889 15 C -0.191 4.191 16 N -0.509 5.509 17 Si 0.807 3.193 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.187 1.187 21 C 0.358 3.642 22 F -0.201 7.201 23 F -0.132 7.132 24 F -0.184 7.184 25 H 0.075 0.925 26 H 0.129 0.871 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.155 0.845 30 H 0.252 0.748 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.578 -10.046 -6.895 13.016 hybrid contribution 0.757 0.597 0.540 1.105 sum -3.821 -9.449 -6.355 12.012 Atomic orbital electron populations 1.23072 0.78627 1.04458 1.01020 1.87761 1.22144 1.24845 1.94063 1.22624 0.89478 0.86843 1.01997 0.86830 1.23526 0.99346 1.04918 0.89654 1.22650 1.04939 0.96528 0.97586 0.83195 1.20340 0.81443 0.88314 0.77908 1.90662 1.46344 1.47133 1.61941 1.45880 1.16884 1.18564 1.53648 1.19342 0.98268 0.80243 0.87834 0.93547 1.21201 1.24030 0.98125 1.16616 0.88945 1.26012 0.99001 0.94240 0.99798 1.70525 1.42253 1.01181 1.36933 0.85200 0.78401 0.77693 0.77977 1.18999 1.20971 1.18709 1.23266 0.74648 0.85447 0.80832 1.93055 1.64798 1.95939 1.66281 1.93379 1.94048 1.47855 1.77895 1.92989 1.50249 1.89376 1.85769 0.92533 0.87138 0.93798 0.88035 0.84536 0.74801 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.88 113.37 1.23 1.65 16 2 O -0.37 -8.91 10.96 -148.98 -1.63 -10.54 16 3 C 0.05 1.31 5.96 30.62 0.18 1.49 16 4 H 0.11 3.26 7.45 -2.39 -0.02 3.24 16 5 C -0.14 -3.25 10.19 30.62 0.31 -2.94 16 6 C -0.20 -5.59 6.13 -11.54 -0.07 -5.66 16 7 H 0.15 3.58 8.14 -2.39 -0.02 3.56 16 8 C 0.53 20.90 7.15 87.66 0.63 21.53 16 9 O -0.58 -27.53 14.83 -3.05 -0.05 -27.57 16 10 N -0.70 -28.44 4.98 -446.10 -2.22 -30.67 16 11 C 0.25 12.60 2.21 44.24 0.10 12.69 16 12 H 0.05 2.70 7.58 -2.39 -0.02 2.68 16 13 C -0.56 -28.43 8.47 25.60 0.22 -28.22 16 14 H 0.09 4.28 7.74 -2.91 -0.02 4.26 16 15 C 0.01 0.76 5.20 84.65 0.44 1.21 16 16 N -0.87 -48.56 9.50 21.45 0.20 -48.35 16 17 Si 0.98 40.38 29.54 68.60 2.03 42.41 16 18 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 21 C 0.41 21.49 2.81 71.98 0.20 21.70 16 22 F -0.22 -11.24 15.68 44.97 0.70 -10.53 16 23 F -0.15 -8.51 12.91 44.97 0.58 -7.93 16 24 F -0.20 -9.88 16.94 44.97 0.76 -9.11 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 29 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.42 14.14 8.54 -92.70 -0.79 13.35 16 31 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -64.67 284.12 4.00 -60.67 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.38 Total: 18.18 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: 3.24 Total: 23.45 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -2.02 Total: -79.02 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.68 Total: -38.11 kcal Atomic # 9 Polarization: -29.63 SS G_CDS: 2.05 Total: -27.58 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -64.67 4.00 -60.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830203981.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.221 kcal (2) G-P(sol) polarization free energy of solvation -64.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds