Wall clock time and date at job start Mon Mar 30 2020 04:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00334 * 2 1 4 4 H 1.48497 * 109.47329 * 264.71430 * 3 2 1 5 5 H 1.48506 * 109.46917 * 24.71142 * 3 2 1 6 6 H 1.48496 * 109.47108 * 144.71009 * 3 2 1 7 7 C 1.37882 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00152 * 5.05417 * 7 2 1 9 9 C 1.50698 * 119.99492 * 185.06487 * 7 2 1 10 10 H 1.09001 * 109.47699 * 35.12534 * 9 7 2 11 11 N 1.46508 * 109.46668 * 275.12522 * 9 7 2 12 12 C 1.34781 * 119.99490 * 155.28009 * 11 9 7 13 13 O 1.21280 * 119.99943 * 359.72361 * 12 11 9 14 14 C 1.50696 * 119.99484 * 179.72610 * 12 11 9 15 15 H 1.09000 * 110.45996 * 300.69649 * 14 12 11 16 16 C 1.54507 * 110.51011 * 178.09347 * 14 12 11 17 17 C 1.54479 * 104.06710 * 241.35360 * 16 14 12 18 18 O 1.44432 * 104.79877 * 23.97721 * 17 16 14 19 19 C 1.44776 * 105.29621 * 319.45426 * 18 17 16 20 20 C 1.53006 * 109.47118 * 155.13069 * 9 7 2 21 21 F 1.39894 * 109.47204 * 175.36428 * 20 9 7 22 22 F 1.39892 * 109.46840 * 295.36796 * 20 9 7 23 23 F 1.39906 * 109.46889 * 55.36331 * 20 9 7 24 24 H 0.96999 * 119.99699 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00190 * 335.00491 * 11 9 7 26 26 H 1.09003 * 110.51340 * 0.02562 * 16 14 12 27 27 H 1.09006 * 110.51167 * 122.70911 * 16 14 12 28 28 H 1.09001 * 110.37424 * 142.80780 * 17 16 14 29 29 H 1.08999 * 110.37436 * 265.14935 * 17 16 14 30 30 H 1.09003 * 110.43046 * 281.77690 * 19 18 17 31 31 H 1.09000 * 110.48765 * 159.32359 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6085 1.9819 -1.3941 5 1 1.3953 2.6823 0.5853 6 1 3.4864 1.4749 0.8088 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1275 -0.0833 9 6 3.5071 -1.1967 0.1147 10 1 3.8228 -0.3841 0.7689 11 7 4.0989 -1.0130 -1.2129 12 6 5.3368 -0.4936 -1.3327 13 8 5.9588 -0.1738 -0.3419 14 6 5.9480 -0.3104 -2.6980 15 1 6.0146 -1.2665 -3.2170 16 6 7.3440 0.3417 -2.5830 17 6 7.2020 1.6717 -3.3559 18 8 5.7893 1.9699 -3.3206 19 6 5.1255 0.7001 -3.5281 20 6 3.9714 -2.5322 0.6996 21 9 5.3696 -2.5764 0.7085 22 9 3.4924 -2.6599 2.0078 23 9 3.4766 -3.5812 -0.0827 24 1 -0.4850 0.8401 -0.0004 25 1 3.6014 -1.2687 -2.0053 26 1 7.5923 0.5310 -1.5387 27 1 8.1005 -0.2910 -3.0474 28 1 7.7689 2.4604 -2.8613 29 1 7.5385 1.5500 -4.3855 30 1 5.1448 0.4287 -4.5836 31 1 4.0987 0.7425 -3.1650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830205532.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:03 Heat of formation + Delta-G solvation = -244.901512 kcal Electronic energy + Delta-G solvation = -21836.715674 eV Core-core repulsion = 17895.869338 eV Total energy + Delta-G solvation = -3940.846336 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.087 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.10527 -46.62341 -46.59021 -40.04491 -38.02713 -34.88418 -32.65074 -32.08652 -29.86121 -28.37159 -25.01019 -23.60536 -22.30466 -20.98742 -19.65410 -18.24025 -17.56677 -17.10748 -16.86881 -16.47326 -16.21551 -15.75518 -15.20607 -14.78295 -14.05609 -13.83548 -13.52542 -13.47745 -13.09743 -13.01121 -12.80013 -12.79193 -12.71570 -12.57831 -11.98280 -11.75283 -11.41254 -11.32450 -11.00600 -10.86907 -10.72840 -10.12079 -9.94489 -9.79509 -9.37788 -8.96313 -8.47772 -6.54460 -4.70193 3.01659 3.11857 3.21960 3.30637 3.58958 3.87144 4.02158 4.09200 4.51198 4.78446 4.87073 4.97850 5.12892 5.14522 5.16209 5.23300 5.36874 5.53138 5.61963 5.72986 5.75062 5.88613 6.23435 6.35625 6.76830 6.88355 7.08938 7.82339 8.23960 8.49901 8.76576 9.00336 10.53493 Molecular weight = 267.09amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.009796 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.579273 B = 2857.763280 C = 3898.946253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.100 3.900 3 Si 0.870 3.130 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.538 4.538 8 H 0.095 0.905 9 C 0.196 3.804 10 H 0.097 0.903 11 N -0.715 5.715 12 C 0.509 3.491 13 O -0.537 6.537 14 C -0.149 4.149 15 H 0.109 0.891 16 C -0.146 4.146 17 C 0.045 3.955 18 O -0.372 6.372 19 C 0.053 3.947 20 C 0.442 3.558 21 F -0.196 7.196 22 F -0.184 7.184 23 F -0.190 7.190 24 H 0.276 0.724 25 H 0.400 0.600 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.143 -0.277 -7.199 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.110 4.110 3 Si 0.695 3.305 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.576 4.576 8 H 0.113 0.887 9 C 0.093 3.907 10 H 0.115 0.885 11 N -0.368 5.368 12 C 0.294 3.706 13 O -0.415 6.415 14 C -0.171 4.171 15 H 0.128 0.872 16 C -0.184 4.184 17 C -0.032 4.032 18 O -0.290 6.290 19 C -0.025 4.025 20 C 0.387 3.613 21 F -0.178 7.178 22 F -0.165 7.165 23 F -0.172 7.172 24 H 0.086 0.914 25 H 0.236 0.764 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.292 0.243 -6.424 12.135 hybrid contribution 0.269 0.167 -0.402 0.512 sum 10.562 0.410 -6.826 12.582 Atomic orbital electron populations 1.69866 1.06380 1.28406 1.44577 1.24963 0.94778 0.99284 0.92008 0.86942 0.80577 0.82697 0.80265 1.18881 1.20652 1.17989 1.20771 0.85938 0.96485 1.54388 0.88712 1.20286 0.96306 0.89686 0.84413 0.88548 1.47587 1.15626 1.62837 1.10707 1.20501 0.82158 0.77314 0.90627 1.90634 1.61374 1.50309 1.39143 1.22765 0.96914 1.01572 0.95838 0.87249 1.22985 0.95155 0.96100 1.04171 1.23435 0.83330 0.97252 0.99157 1.89226 1.17679 1.28477 1.93654 1.23525 0.97762 0.82624 0.98557 1.21532 0.73899 0.89610 0.76303 1.93130 1.31144 1.97078 1.96397 1.93102 1.88226 1.96585 1.38634 1.93079 1.87641 1.61616 1.74847 0.91424 0.76407 0.88090 0.90311 0.89097 0.92424 0.91152 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.59 13.96 55.43 0.77 -22.82 16 2 C 0.10 2.60 5.47 -17.82 -0.10 2.51 16 3 Si 0.87 20.47 27.26 -169.99 -4.63 15.84 16 4 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -6.23 6.14 56.52 0.35 -5.88 16 7 C -0.54 -13.67 8.68 -34.44 -0.30 -13.97 16 8 H 0.09 2.60 7.67 -52.49 -0.40 2.20 16 9 C 0.20 4.50 1.44 -69.08 -0.10 4.40 16 10 H 0.10 2.40 5.18 -51.93 -0.27 2.13 16 11 N -0.72 -14.12 4.30 -54.93 -0.24 -14.36 16 12 C 0.51 9.73 6.52 -10.99 -0.07 9.66 16 13 O -0.54 -12.07 13.88 5.56 0.08 -12.00 16 14 C -0.15 -2.13 3.50 -90.21 -0.32 -2.44 16 15 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 16 C -0.15 -1.90 6.67 -25.16 -0.17 -2.07 16 17 C 0.05 0.55 7.63 37.93 0.29 0.84 16 18 O -0.37 -5.97 11.66 -35.23 -0.41 -6.39 16 19 C 0.05 0.74 7.19 37.93 0.27 1.01 16 20 C 0.44 9.81 2.83 37.16 0.11 9.91 16 21 F -0.20 -4.28 15.54 2.25 0.03 -4.24 16 22 F -0.18 -4.17 17.13 2.25 0.04 -4.13 16 23 F -0.19 -4.07 16.63 2.25 0.04 -4.03 16 24 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.40 6.96 8.52 -40.82 -0.35 6.61 16 26 H 0.10 1.57 6.50 -51.93 -0.34 1.23 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.54 7.59 -51.93 -0.39 1.14 16 LS Contribution 275.14 15.07 4.15 4.15 Total: -1.00 -29.90 275.14 -3.61 -33.51 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.05 Total: 4.63 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -0.38 Total: 9.85 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.54 Total: -37.18 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.33 Total: -18.38 kcal Atomic # 9 Polarization: -12.52 SS G_CDS: 0.11 Total: -12.41 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.63 Total: 15.84 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.90 -3.61 -33.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830205532.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.395 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds