Wall clock time and date at job start Mon Mar 30 2020 04:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00334 * 2 1 4 4 H 1.48497 * 109.47329 * 264.71430 * 3 2 1 5 5 H 1.48506 * 109.46917 * 24.71142 * 3 2 1 6 6 H 1.48496 * 109.47108 * 144.71009 * 3 2 1 7 7 C 1.37882 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00152 * 5.05417 * 7 2 1 9 9 C 1.50698 * 119.99492 * 185.06487 * 7 2 1 10 10 H 1.09001 * 109.47699 * 35.12534 * 9 7 2 11 11 N 1.46508 * 109.46668 * 275.12522 * 9 7 2 12 12 C 1.34781 * 119.99490 * 155.28009 * 11 9 7 13 13 O 1.21280 * 119.99943 * 359.72361 * 12 11 9 14 14 C 1.50696 * 119.99484 * 179.72610 * 12 11 9 15 15 H 1.09000 * 110.45996 * 300.69649 * 14 12 11 16 16 C 1.54507 * 110.51011 * 178.09347 * 14 12 11 17 17 C 1.54479 * 104.06710 * 241.35360 * 16 14 12 18 18 O 1.44432 * 104.79877 * 23.97721 * 17 16 14 19 19 C 1.44776 * 105.29621 * 319.45426 * 18 17 16 20 20 C 1.53006 * 109.47118 * 155.13069 * 9 7 2 21 21 F 1.39894 * 109.47204 * 175.36428 * 20 9 7 22 22 F 1.39892 * 109.46840 * 295.36796 * 20 9 7 23 23 F 1.39906 * 109.46889 * 55.36331 * 20 9 7 24 24 H 0.96999 * 119.99699 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00190 * 335.00491 * 11 9 7 26 26 H 1.09003 * 110.51340 * 0.02562 * 16 14 12 27 27 H 1.09006 * 110.51167 * 122.70911 * 16 14 12 28 28 H 1.09001 * 110.37424 * 142.80780 * 17 16 14 29 29 H 1.08999 * 110.37436 * 265.14935 * 17 16 14 30 30 H 1.09003 * 110.43046 * 281.77690 * 19 18 17 31 31 H 1.09000 * 110.48765 * 159.32359 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6085 1.9819 -1.3941 5 1 1.3953 2.6823 0.5853 6 1 3.4864 1.4749 0.8088 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1275 -0.0833 9 6 3.5071 -1.1967 0.1147 10 1 3.8228 -0.3841 0.7689 11 7 4.0989 -1.0130 -1.2129 12 6 5.3368 -0.4936 -1.3327 13 8 5.9588 -0.1738 -0.3419 14 6 5.9480 -0.3104 -2.6980 15 1 6.0146 -1.2665 -3.2170 16 6 7.3440 0.3417 -2.5830 17 6 7.2020 1.6717 -3.3559 18 8 5.7893 1.9699 -3.3206 19 6 5.1255 0.7001 -3.5281 20 6 3.9714 -2.5322 0.6996 21 9 5.3696 -2.5764 0.7085 22 9 3.4924 -2.6599 2.0078 23 9 3.4766 -3.5812 -0.0827 24 1 -0.4850 0.8401 -0.0004 25 1 3.6014 -1.2687 -2.0053 26 1 7.5923 0.5310 -1.5387 27 1 8.1005 -0.2910 -3.0474 28 1 7.7689 2.4604 -2.8613 29 1 7.5385 1.5500 -4.3855 30 1 5.1448 0.4287 -4.5836 31 1 4.0987 0.7425 -3.1650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830205532.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:03 Heat of formation + Delta-G solvation = -266.608726 kcal Electronic energy + Delta-G solvation = -21837.656969 eV Core-core repulsion = 17895.869338 eV Total energy + Delta-G solvation = -3941.787631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.91552 -48.43019 -48.39616 -41.36895 -39.35695 -36.66760 -34.54389 -33.32087 -31.30380 -29.70146 -26.94962 -24.85810 -23.57944 -22.56634 -21.14922 -20.00237 -19.37011 -18.74677 -18.51477 -18.23189 -17.35763 -17.17826 -16.67575 -16.08923 -15.68110 -15.39882 -15.23041 -15.17253 -14.89025 -14.81770 -14.60452 -14.55933 -14.51721 -13.87452 -13.62351 -13.00714 -12.90660 -12.62933 -12.42538 -12.28483 -12.04405 -11.89373 -11.84750 -11.26535 -10.97034 -10.59378 -10.16982 -8.57907 -6.75692 1.22356 1.28413 1.37767 1.52682 1.96058 2.12909 2.13131 2.89398 3.00240 3.22910 3.32582 3.41753 3.48577 3.83258 3.93805 4.19223 4.29240 4.40490 4.51482 4.64494 4.72978 4.82791 4.91714 4.94292 5.19241 5.43393 5.79620 5.85178 6.41451 6.65478 6.96939 7.24794 8.54370 Molecular weight = 267.09amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.009796 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.579273 B = 2857.763280 C = 3898.946253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.204 3.796 10 H 0.078 0.922 11 N -0.713 5.713 12 C 0.502 3.498 13 O -0.574 6.574 14 C -0.143 4.143 15 H 0.149 0.851 16 C -0.145 4.145 17 C 0.043 3.957 18 O -0.408 6.408 19 C 0.051 3.949 20 C 0.445 3.555 21 F -0.191 7.191 22 F -0.188 7.188 23 F -0.184 7.184 24 H 0.280 0.720 25 H 0.413 0.587 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.703 -0.211 -9.176 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.742 3.258 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.099 3.901 10 H 0.095 0.905 11 N -0.366 5.366 12 C 0.290 3.710 13 O -0.454 6.454 14 C -0.164 4.164 15 H 0.166 0.834 16 C -0.183 4.183 17 C -0.033 4.033 18 O -0.327 6.327 19 C -0.026 4.026 20 C 0.389 3.611 21 F -0.173 7.173 22 F -0.170 7.170 23 F -0.166 7.166 24 H 0.090 0.910 25 H 0.251 0.749 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.855 0.304 -8.435 14.553 hybrid contribution -0.150 0.089 0.230 0.289 sum 11.705 0.393 -8.204 14.299 Atomic orbital electron populations 1.69925 1.07465 1.29298 1.46494 1.25416 0.95117 1.01397 0.91891 0.86212 0.78856 0.80302 0.80449 1.17711 1.20101 1.19661 1.20709 0.87136 0.95433 1.54246 0.91197 1.19909 0.95005 0.89562 0.85641 0.90479 1.47151 1.16410 1.63259 1.09732 1.21381 0.81292 0.75808 0.92509 1.90625 1.62133 1.51507 1.41097 1.22870 0.97140 1.03826 0.92576 0.83382 1.23012 0.95195 0.97199 1.02855 1.23653 0.81687 0.96863 1.01092 1.89189 1.19737 1.29745 1.94057 1.23664 0.96396 0.81855 1.00667 1.21378 0.74067 0.89483 0.76141 1.93138 1.30728 1.97058 1.96371 1.93093 1.88317 1.96601 1.38987 1.93089 1.87595 1.61230 1.74637 0.90979 0.74865 0.91197 0.86794 0.88833 0.88956 0.86961 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.69 13.96 21.45 0.30 -49.39 16 2 C 0.07 3.59 5.47 84.65 0.46 4.05 16 3 Si 0.92 42.43 27.26 68.60 1.87 44.30 16 4 H -0.25 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -13.19 6.14 99.48 0.61 -12.58 16 7 C -0.54 -27.53 8.68 25.60 0.22 -27.31 16 8 H 0.07 3.90 7.67 -2.91 -0.02 3.88 16 9 C 0.20 9.33 1.44 44.24 0.06 9.40 16 10 H 0.08 3.88 5.18 -2.39 -0.01 3.87 16 11 N -0.71 -27.34 4.30 -446.07 -1.92 -29.26 16 12 C 0.50 18.45 6.52 87.65 0.57 19.03 16 13 O -0.57 -25.52 13.88 -3.03 -0.04 -25.56 16 14 C -0.14 -3.60 3.50 -10.53 -0.04 -3.63 16 15 H 0.15 2.60 8.14 -2.39 -0.02 2.58 16 16 C -0.14 -3.30 6.67 31.61 0.21 -3.09 16 17 C 0.04 0.91 7.63 72.49 0.55 1.47 16 18 O -0.41 -12.05 11.66 -148.98 -1.74 -13.79 16 19 C 0.05 1.26 7.19 72.49 0.52 1.78 16 20 C 0.45 19.56 2.83 71.98 0.20 19.76 16 21 F -0.19 -8.19 15.54 44.97 0.70 -7.50 16 22 F -0.19 -8.54 17.13 44.97 0.77 -7.77 16 23 F -0.18 -7.73 16.63 44.97 0.75 -6.98 16 24 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.41 13.75 8.52 -92.71 -0.79 12.96 16 26 H 0.07 2.07 6.50 -2.39 -0.02 2.06 16 27 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.26 7.59 -2.39 -0.02 2.24 16 Total: -1.00 -64.96 275.14 3.76 -61.20 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.30 Total: 13.28 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 2.77 Total: 21.46 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -1.62 Total: -78.65 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.78 Total: -39.35 kcal Atomic # 9 Polarization: -24.46 SS G_CDS: 2.22 Total: -22.25 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.87 Total: 44.30 kcal Total: -64.96 3.76 -61.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830205532.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.406 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds