Wall clock time and date at job start Mon Mar 30 2020 04:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 O 1.21283 * 120.00011 * 120.00264 * 12 2 1 14 14 N 1.34775 * 120.00072 * 299.99711 * 12 2 1 15 15 C 1.47972 * 126.93872 * 359.69079 * 14 12 2 16 16 C 1.54727 * 102.84783 * 201.18599 * 15 14 12 17 17 O 1.44639 * 102.44772 * 324.16856 * 16 15 14 18 18 C 1.43726 * 105.57685 * 37.36621 * 17 16 15 19 19 H 1.08998 * 109.71852 * 94.58928 * 18 17 16 20 20 C 1.53008 * 109.67312 * 215.15722 * 18 17 16 21 21 F 1.39897 * 109.47402 * 58.82248 * 20 18 17 22 22 F 1.39903 * 109.47095 * 178.82564 * 20 18 17 23 23 F 1.39901 * 109.46988 * 298.81879 * 20 18 17 24 24 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.75399 * 319.58395 * 15 14 12 29 29 H 1.09001 * 110.75746 * 82.95122 * 15 14 12 30 30 H 1.09003 * 110.93358 * 205.85299 * 16 15 14 31 31 H 1.09001 * 110.63926 * 82.34789 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 0.8770 0.9349 2.7673 16 6 1.2986 1.2776 4.2160 17 8 1.5173 -0.0299 4.7946 18 6 2.1098 -0.8199 3.7503 19 1 3.1957 -0.7948 3.8413 20 6 1.6166 -2.2646 3.8544 21 9 0.2217 -2.2898 3.7509 22 9 2.1749 -3.0236 2.8203 23 9 2.0025 -2.8013 5.0874 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7173 1.1669 -3.4844 28 1 1.1092 1.7583 2.0919 29 1 -0.1834 0.6861 2.7244 30 1 0.5008 1.8046 4.7395 31 1 2.2186 1.8621 4.2203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912080114.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:39 Heat of formation + Delta-G solvation = -214.830534 kcal Electronic energy + Delta-G solvation = -21990.834622 eV Core-core repulsion = 18051.292262 eV Total energy + Delta-G solvation = -3939.542360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.76023 -47.35050 -47.17907 -40.33783 -38.03802 -34.09801 -33.63678 -31.01634 -30.30536 -27.16643 -25.27834 -23.94325 -22.96431 -21.89564 -19.57174 -18.47310 -18.15669 -17.57454 -16.77326 -16.10616 -15.83558 -15.41441 -14.84129 -14.43100 -14.28009 -14.17803 -14.06986 -13.76694 -13.65492 -13.36316 -13.29815 -13.03720 -12.89771 -12.19591 -12.14558 -11.67421 -11.40903 -11.04708 -10.84452 -10.72321 -10.37495 -10.24999 -10.04747 -9.09484 -8.86894 -8.66804 -8.43174 -6.11823 -4.15705 2.59863 2.94356 3.31927 3.33593 3.35024 3.41075 3.43281 4.00446 4.31713 4.40447 4.53092 4.68926 4.82852 4.97755 5.11932 5.22377 5.39708 5.60936 5.73842 6.04092 6.38314 6.54846 6.72886 6.81960 7.32601 7.58395 7.77222 7.95467 8.18574 8.84628 8.93713 9.50172 10.95772 Molecular weight = 267.09amu Principal moments of inertia in cm(-1) A = 0.029436 B = 0.006646 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.002246 B = 4212.047019 C = 4760.184844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 H 0.056 0.944 4 C -0.506 4.506 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.539 3.461 13 O -0.510 6.510 14 N -0.645 5.645 15 C 0.073 3.927 16 C 0.038 3.962 17 O -0.352 6.352 18 C 0.261 3.739 19 H 0.115 0.885 20 C 0.438 3.562 21 F -0.178 7.178 22 F -0.148 7.148 23 F -0.184 7.184 24 H 0.032 0.968 25 H 0.019 0.981 26 H 0.096 0.904 27 H 0.263 0.737 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 2.654 13.132 13.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.022 3.978 3 H 0.073 0.927 4 C -0.544 4.544 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.332 3.668 13 O -0.381 6.381 14 N -0.390 5.390 15 C -0.050 4.050 16 C -0.038 4.038 17 O -0.269 6.269 18 C 0.115 3.885 19 H 0.133 0.867 20 C 0.382 3.618 21 F -0.160 7.160 22 F -0.130 7.130 23 F -0.165 7.165 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.785 2.066 13.014 13.200 hybrid contribution 0.166 -0.548 -0.820 1.000 sum -0.619 1.518 12.194 12.304 Atomic orbital electron populations 1.21880 0.96193 1.00240 1.01399 1.18868 0.94423 0.96677 0.87843 0.92665 1.21085 1.31550 1.12994 0.88791 0.90677 1.24925 0.94954 0.95007 0.99126 1.69846 1.36844 1.22908 1.23864 0.86469 0.79322 0.79747 0.81420 1.20107 1.21291 1.20117 1.22238 0.78351 0.84309 0.81950 1.90654 1.36782 1.25713 1.84972 1.49886 1.54469 1.30538 1.04140 1.23196 0.96676 0.89182 0.95956 1.24105 1.02433 0.84562 0.92731 1.89165 1.82633 1.23453 1.31637 1.23393 0.98375 0.86221 0.80525 0.86740 1.21009 0.76099 0.90498 0.74172 1.93169 1.30013 1.97054 1.95756 1.93391 1.84617 1.77532 1.57418 1.93163 1.90909 1.88125 1.44323 0.94891 0.96224 0.88595 0.92752 0.87735 0.89494 0.86624 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.81 37.16 0.33 -2.75 16 2 C 0.04 1.02 2.09 -92.92 -0.19 0.83 16 3 H 0.06 1.33 8.00 -51.93 -0.42 0.92 16 4 C -0.51 -13.93 8.37 -34.44 -0.29 -14.22 16 5 H 0.08 2.19 6.75 -52.49 -0.35 1.83 16 6 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 7 N -0.90 -24.29 11.33 55.43 0.63 -23.67 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.54 11.93 6.95 -10.98 -0.08 11.86 16 13 O -0.51 -12.81 12.82 5.56 0.07 -12.74 16 14 N -0.65 -11.22 3.05 -168.26 -0.51 -11.73 16 15 C 0.07 0.94 5.47 -2.32 -0.01 0.93 16 16 C 0.04 0.38 7.88 38.07 0.30 0.68 16 17 O -0.35 -4.74 11.19 -35.23 -0.39 -5.13 16 18 C 0.26 4.09 3.49 -3.66 -0.01 4.08 16 19 H 0.12 1.67 8.14 -51.93 -0.42 1.24 16 20 C 0.44 7.63 2.95 37.16 0.11 7.74 16 21 F -0.18 -3.20 17.18 2.25 0.04 -3.16 16 22 F -0.15 -3.03 13.89 2.25 0.03 -3.00 16 23 F -0.18 -2.95 17.28 2.25 0.04 -2.91 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.35 5.12 -51.93 -0.27 0.08 16 26 H 0.10 2.33 6.08 -51.93 -0.32 2.01 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.10 1.27 7.80 -51.93 -0.41 0.86 16 29 H 0.09 1.10 7.02 -51.93 -0.36 0.74 16 30 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 270.57 15.07 4.08 4.08 Total: -1.00 -30.64 270.57 -3.93 -34.57 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -2.95 Total: -3.40 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 0.06 Total: 10.68 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.12 Total: -35.40 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.32 Total: -17.87 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.11 Total: -9.07 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.64 -3.93 -34.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912080114.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.258 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds