Wall clock time and date at job start Mon Mar 30 2020 04:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 O 1.21283 * 120.00011 * 120.00264 * 12 2 1 14 14 N 1.34775 * 120.00072 * 299.99711 * 12 2 1 15 15 C 1.47972 * 126.93872 * 359.69079 * 14 12 2 16 16 C 1.54727 * 102.84783 * 201.18599 * 15 14 12 17 17 O 1.44639 * 102.44772 * 324.16856 * 16 15 14 18 18 C 1.43726 * 105.57685 * 37.36621 * 17 16 15 19 19 H 1.08998 * 109.71852 * 94.58928 * 18 17 16 20 20 C 1.53008 * 109.67312 * 215.15722 * 18 17 16 21 21 F 1.39897 * 109.47402 * 58.82248 * 20 18 17 22 22 F 1.39903 * 109.47095 * 178.82564 * 20 18 17 23 23 F 1.39901 * 109.46988 * 298.81879 * 20 18 17 24 24 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.75399 * 319.58395 * 15 14 12 29 29 H 1.09001 * 110.75746 * 82.95122 * 15 14 12 30 30 H 1.09003 * 110.93358 * 205.85299 * 16 15 14 31 31 H 1.09001 * 110.63926 * 82.34789 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 0.8770 0.9349 2.7673 16 6 1.2986 1.2776 4.2160 17 8 1.5173 -0.0299 4.7946 18 6 2.1098 -0.8199 3.7503 19 1 3.1957 -0.7948 3.8413 20 6 1.6166 -2.2646 3.8544 21 9 0.2217 -2.2898 3.7509 22 9 2.1749 -3.0236 2.8203 23 9 2.0025 -2.8013 5.0874 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7173 1.1669 -3.4844 28 1 1.1092 1.7583 2.0919 29 1 -0.1834 0.6861 2.7244 30 1 0.5008 1.8046 4.7395 31 1 2.2186 1.8621 4.2203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912080114.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:39 Heat of formation + Delta-G solvation = -236.208657 kcal Electronic energy + Delta-G solvation = -21991.761647 eV Core-core repulsion = 18051.292262 eV Total energy + Delta-G solvation = -3940.469385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.15185 -48.70465 -48.63837 -41.62707 -39.56455 -35.91954 -35.14013 -32.60557 -31.73044 -28.49479 -27.26386 -25.40787 -24.04281 -23.51681 -21.06005 -19.80862 -19.52799 -18.95308 -18.45680 -17.88654 -17.29948 -16.66712 -16.36627 -16.01427 -15.57500 -15.54162 -15.48772 -15.25814 -15.06588 -14.80983 -14.71155 -14.59807 -14.35287 -13.78303 -13.53800 -13.19556 -12.96030 -12.74221 -12.61416 -12.41846 -12.25171 -12.02205 -11.29525 -11.05721 -10.68938 -10.42909 -10.06464 -8.17515 -6.27484 1.25362 1.41775 1.42620 1.50018 1.61178 1.75097 2.18199 2.43373 2.68529 2.99179 3.13026 3.37563 3.58262 3.71614 3.91368 4.14308 4.23650 4.65497 4.69971 4.77453 4.84078 4.92287 5.04986 5.24056 5.44623 5.71390 5.86709 6.12238 6.35425 6.79259 7.17727 7.41046 8.88156 Molecular weight = 267.09amu Principal moments of inertia in cm(-1) A = 0.029436 B = 0.006646 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.002246 B = 4212.047019 C = 4760.184844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.040 3.960 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.049 0.951 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.952 3.048 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.541 3.459 13 O -0.550 6.550 14 N -0.644 5.644 15 C 0.059 3.941 16 C 0.044 3.956 17 O -0.352 6.352 18 C 0.267 3.733 19 H 0.129 0.871 20 C 0.433 3.567 21 F -0.183 7.183 22 F -0.170 7.170 23 F -0.176 7.176 24 H 0.014 0.986 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.155 0.845 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 4.025 14.292 14.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.019 3.981 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.067 0.933 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.201 1.201 12 C 0.334 3.666 13 O -0.425 6.425 14 N -0.387 5.387 15 C -0.062 4.062 16 C -0.031 4.031 17 O -0.269 6.269 18 C 0.121 3.879 19 H 0.146 0.854 20 C 0.377 3.623 21 F -0.165 7.165 22 F -0.152 7.152 23 F -0.157 7.157 24 H 0.034 0.966 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.173 0.827 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.231 3.484 14.217 14.689 hybrid contribution 0.251 -0.921 -1.091 1.449 sum -0.979 2.563 13.126 13.410 Atomic orbital electron populations 1.21696 0.94986 0.99287 1.02348 1.18747 0.95309 0.96112 0.87901 0.92959 1.21243 1.32060 1.12876 0.90988 0.93274 1.25508 0.95112 0.95675 1.01178 1.69908 1.36886 1.23269 1.24516 0.85700 0.78761 0.78647 0.79064 1.20548 1.19825 1.20095 1.21679 0.78130 0.83721 0.83118 1.90633 1.38582 1.27283 1.86003 1.49593 1.54098 1.31443 1.03600 1.23576 0.96401 0.87816 0.98448 1.24430 1.04868 0.83265 0.90524 1.89198 1.82447 1.24766 1.30497 1.23383 0.99062 0.85323 0.80127 0.85430 1.21332 0.75812 0.91330 0.73870 1.93153 1.30446 1.97119 1.95785 1.93350 1.84947 1.78284 1.58591 1.93173 1.90788 1.88153 1.43591 0.96643 0.92162 0.90667 0.92440 0.86701 0.88918 0.82741 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.81 71.98 0.63 -4.86 16 2 C 0.04 1.93 2.09 -12.28 -0.03 1.90 16 3 H 0.05 2.52 8.00 -2.39 -0.02 2.50 16 4 C -0.53 -29.99 8.37 25.60 0.21 -29.78 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.03 1.36 5.31 84.65 0.45 1.81 16 7 N -0.91 -48.99 11.33 21.45 0.24 -48.75 16 8 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 9 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 C 0.54 24.00 6.95 87.66 0.61 24.61 16 13 O -0.55 -28.28 12.82 -3.04 -0.04 -28.32 16 14 N -0.64 -21.41 3.05 -904.15 -2.75 -24.17 16 15 C 0.06 1.33 5.47 86.69 0.47 1.81 16 16 C 0.04 0.68 7.88 72.57 0.57 1.26 16 17 O -0.35 -8.26 11.19 -148.98 -1.67 -9.93 16 18 C 0.27 7.86 3.49 86.25 0.30 8.17 16 19 H 0.13 3.48 8.14 -2.39 -0.02 3.46 16 20 C 0.43 14.68 2.95 71.98 0.21 14.90 16 21 F -0.18 -6.40 17.18 44.97 0.77 -5.63 16 22 F -0.17 -7.04 13.89 44.97 0.62 -6.42 16 23 F -0.18 -5.42 17.28 44.97 0.78 -4.64 16 24 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 2.08 5.12 -2.39 -0.01 2.06 16 26 H 0.07 3.63 6.08 -2.38 -0.01 3.61 16 27 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.11 2.42 7.80 -2.39 -0.02 2.40 16 29 H 0.09 2.04 7.02 -2.39 -0.02 2.02 16 30 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -67.03 270.57 4.60 -62.44 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: 1.17 Total: -0.51 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 3.44 Total: 19.82 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -2.51 Total: -72.91 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -1.71 Total: -38.25 kcal Atomic # 9 Polarization: -18.86 SS G_CDS: 2.17 Total: -16.69 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -67.03 4.60 -62.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912080114.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.771 kcal (2) G-P(sol) polarization free energy of solvation -67.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds