Wall clock time and date at job start Mon Mar 30 2020 06:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99882 * 2 1 4 4 C 1.50701 * 109.47334 * 179.97438 * 3 2 1 5 5 C 1.33324 * 122.70491 * 94.97463 * 4 3 2 6 6 S 1.76168 * 108.09206 * 179.97438 * 5 4 3 7 7 C 1.70968 * 90.35596 * 0.02562 * 6 5 4 8 8 N 1.38615 * 124.94895 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00030 * 175.09415 * 8 7 6 10 10 C 1.50699 * 109.46974 * 89.99933 * 9 8 7 11 11 H 1.07996 * 120.00215 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99688 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00056 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99625 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47539 * 89.99897 * 14 12 10 16 16 H 1.48499 * 109.47092 * 209.99950 * 14 12 10 17 17 H 1.48500 * 109.47638 * 330.00023 * 14 12 10 18 18 C 1.46496 * 119.99769 * 355.09811 * 8 7 6 19 19 C 1.53004 * 117.49485 * 193.47355 * 18 8 7 20 20 C 1.52999 * 117.50028 * 124.85357 * 18 8 7 21 21 N 1.29683 * 110.10108 * 0.23912 * 7 6 5 22 22 H 1.08999 * 109.47094 * 300.00351 * 1 2 3 23 23 H 1.09000 * 109.46954 * 60.00605 * 1 2 3 24 24 H 1.09004 * 109.46699 * 180.02562 * 1 2 3 25 25 H 1.00896 * 111.00253 * 123.94676 * 2 1 3 26 26 H 1.09001 * 109.47006 * 59.99791 * 3 2 1 27 27 H 1.09005 * 109.47129 * 300.00096 * 3 2 1 28 28 H 1.07997 * 125.95708 * 359.97438 * 5 4 3 29 29 H 1.09004 * 109.46895 * 329.99908 * 9 8 7 30 30 H 1.08990 * 109.47272 * 210.00294 * 9 8 7 31 31 H 0.97000 * 119.99879 * 180.02562 * 13 12 10 32 32 H 1.08999 * 115.55193 * 339.17387 * 18 8 7 33 33 H 1.08994 * 117.49903 * 359.97438 * 19 18 8 34 34 H 1.08998 * 117.50122 * 145.01832 * 19 18 8 35 35 H 1.09004 * 117.49734 * 214.97597 * 20 18 8 36 36 H 1.08998 * 117.50055 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5019 1.3314 0.0006 5 6 4.2251 1.4093 -1.1167 6 16 5.9280 1.3262 -0.6732 7 6 5.5026 1.1935 0.9774 8 7 6.4050 1.0783 2.0232 9 6 5.9259 1.0792 3.4077 10 6 5.6320 -0.3347 3.8384 11 1 5.7863 -1.1521 3.1497 12 6 5.1652 -0.5845 5.1115 13 7 4.9768 0.4110 5.9500 14 14 4.8016 -2.3372 5.6456 15 1 6.0219 -2.9357 6.2437 16 1 3.7091 -2.3316 6.6514 17 1 4.3846 -3.1377 4.4665 18 6 7.8379 0.9558 1.7441 19 6 8.7469 0.5191 2.8947 20 6 8.7755 1.9682 2.4049 21 7 4.2124 1.2107 1.1079 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8306 -0.5260 0.7814 26 1 1.6459 1.8948 0.8900 27 1 1.6459 1.8949 -0.8900 28 1 3.8350 1.5064 -2.1191 29 1 5.0168 1.6767 3.4771 30 1 6.6909 1.5052 4.0566 31 1 4.6488 0.2351 6.8457 32 1 8.0939 0.6123 0.7418 33 1 8.2789 0.3234 3.8594 34 1 9.6012 -0.1120 2.6496 35 1 9.6486 2.2906 1.8375 36 1 8.3262 2.7258 3.0470 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070682215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:24 Heat of formation + Delta-G solvation = 84.495220 kcal Electronic energy + Delta-G solvation = -18147.178459 eV Core-core repulsion = 15373.351295 eV Total energy + Delta-G solvation = -2773.827164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -39.27057 -37.79942 -35.53140 -33.63623 -32.41583 -29.50741 -27.47262 -26.77225 -23.91219 -23.31957 -22.62588 -21.91815 -19.87603 -18.80749 -17.65302 -16.43694 -16.10236 -15.58849 -15.03670 -14.72806 -14.27309 -14.22917 -14.00556 -13.54659 -12.78198 -12.48586 -12.40522 -12.14784 -11.80407 -11.63630 -11.41686 -11.17937 -10.96577 -10.76545 -10.74354 -10.58453 -10.14169 -10.06053 -9.61538 -9.00506 -8.74003 -8.59177 -8.47204 -8.24632 -6.75688 -6.04827 -4.11867 1.64121 1.81621 2.39532 3.27402 3.34417 3.38328 3.47639 3.59492 4.30115 4.42156 4.65715 5.07270 5.20276 5.25623 5.27450 5.33967 5.40000 5.54203 5.58795 5.76689 5.84755 5.92244 5.93159 6.01635 6.32080 6.37637 6.64716 6.73214 6.87113 7.10718 7.34118 7.51046 7.72123 7.87927 8.04000 8.18257 8.75168 8.92945 9.52206 10.99619 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.008340 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.326066 B = 3356.667324 C = 5142.037289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.691 5.691 3 C 0.136 3.864 4 C 0.122 3.878 5 C -0.306 4.306 6 S 0.030 5.970 7 C 0.357 3.643 8 N -0.531 5.531 9 C 0.258 3.742 10 C -0.517 4.517 11 H 0.058 0.942 12 C 0.062 3.938 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.082 3.918 19 C -0.170 4.170 20 C -0.198 4.198 21 N -0.541 5.541 22 H 0.022 0.978 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.353 0.647 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.163 0.837 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 2.479 -11.131 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.322 5.322 3 C 0.005 3.995 4 C -0.011 4.011 5 C -0.449 4.449 6 S 0.278 5.722 7 C -0.014 4.014 8 N -0.244 5.244 9 C 0.138 3.862 10 C -0.556 4.556 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.024 4.024 19 C -0.208 4.208 20 C -0.237 4.237 21 N -0.266 5.266 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.171 0.829 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.180 0.820 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.452 2.413 -11.479 11.820 hybrid contribution -1.331 -0.734 1.337 2.024 sum 0.121 1.679 -10.142 10.281 Atomic orbital electron populations 1.22175 0.88015 1.01741 1.00158 1.60453 1.07211 1.13608 1.50969 1.20370 0.87729 0.90341 1.01078 1.19637 0.96286 0.98468 0.86667 1.25837 0.93065 1.23219 1.02806 1.83532 1.09689 1.75814 1.03124 1.23443 0.90241 0.96398 0.91353 1.46189 1.01262 1.71896 1.05068 1.19392 0.95595 0.97900 0.73306 1.21389 1.43935 0.92601 0.97701 0.92397 1.24897 0.95378 0.97236 0.96441 1.69927 1.46080 1.30784 1.06676 0.86530 0.77971 0.84755 0.78389 1.20675 1.21204 1.19877 1.21436 0.78949 1.04540 0.97492 1.23404 1.00553 0.96344 1.00542 1.23439 1.01594 0.93916 1.04793 1.66271 1.02532 1.27902 1.29916 0.95961 0.91964 0.91531 0.82876 0.93532 0.90003 0.81956 0.93668 0.94671 0.92754 0.86722 0.86015 0.88676 0.88719 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.70 60.07 0.64 0.99 16 2 N -0.69 -10.61 6.85 -122.41 -0.84 -11.44 16 3 C 0.14 2.14 6.12 -4.97 -0.03 2.11 16 4 C 0.12 2.27 6.25 -84.19 -0.53 1.74 16 5 C -0.31 -5.09 11.08 29.02 0.32 -4.77 16 6 S 0.03 0.50 21.79 -107.50 -2.34 -1.84 16 7 C 0.36 7.52 7.73 -87.68 -0.68 6.85 16 8 N -0.53 -11.42 2.91 -169.79 -0.49 -11.91 16 9 C 0.26 6.52 4.52 -5.19 -0.02 6.50 16 10 C -0.52 -14.13 8.92 -34.44 -0.31 -14.44 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.90 -25.81 13.29 55.43 0.74 -25.08 16 14 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.08 1.44 6.24 -67.93 -0.42 1.01 16 19 C -0.17 -2.82 9.72 -26.73 -0.26 -3.08 16 20 C -0.20 -3.00 10.02 -26.73 -0.27 -3.27 16 21 N -0.54 -11.95 9.86 -11.36 -0.11 -12.06 16 22 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.35 6.06 8.81 -39.29 -0.35 5.72 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 28 H 0.16 2.25 8.06 -52.49 -0.42 1.82 16 29 H 0.05 1.28 7.68 -51.93 -0.40 0.89 16 30 H 0.04 0.91 6.25 -51.93 -0.32 0.58 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.12 1.79 7.25 -51.93 -0.38 1.42 16 33 H 0.12 2.42 6.29 -51.93 -0.33 2.09 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.10 1.60 7.83 -51.93 -0.41 1.20 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -29.79 317.56 -10.04 -39.83 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.10 Total: 5.92 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.65 Total: -4.73 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.71 Total: -60.50 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -2.34 Total: -1.84 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.79 -10.04 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070682215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.327 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds