Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46951 * 111.00239 * 2 1 4 4 C 1.53055 * 109.36408 * 183.18292 * 3 2 1 5 5 N 1.46953 * 109.36514 * 301.59926 * 4 3 2 6 6 C 1.46906 * 110.99875 * 183.18861 * 5 4 3 7 7 C 1.50699 * 109.47140 * 170.00105 * 6 5 4 8 8 N 1.29519 * 124.55847 * 90.02655 * 7 6 5 9 9 C 1.30680 * 117.62670 * 179.97438 * 8 7 6 10 10 C 1.38579 * 113.55234 * 359.97438 * 9 8 7 11 11 C 1.40050 * 126.25513 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99645 * 180.02562 * 11 10 9 13 13 C 1.40073 * 119.99550 * 0.02675 * 11 10 9 14 14 N 1.30861 * 120.00403 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99403 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47483 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47256 * 120.00320 * 15 13 11 18 18 H 1.48508 * 109.46878 * 239.99842 * 15 13 11 19 19 S 1.70880 * 124.56132 * 269.71988 * 7 6 5 20 20 C 1.46951 * 110.88066 * 59.32047 * 5 4 3 21 21 C 1.46966 * 110.99706 * 123.79713 * 2 1 3 22 22 H 1.09008 * 109.46668 * 59.99934 * 1 2 3 23 23 H 1.08997 * 109.47387 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47293 * 300.00295 * 1 2 3 25 25 H 1.09005 * 109.48678 * 63.21907 * 3 2 1 26 26 H 1.08996 * 109.50863 * 303.16254 * 3 2 1 27 27 H 1.09003 * 109.48634 * 181.63290 * 4 3 2 28 28 H 1.08998 * 109.50425 * 61.57881 * 4 3 2 29 29 H 1.09004 * 109.47040 * 290.00043 * 6 5 4 30 30 H 1.09000 * 109.47033 * 49.99995 * 6 5 4 31 31 H 1.08005 * 123.22151 * 179.97438 * 9 8 7 32 32 H 0.96991 * 120.00109 * 179.97438 * 14 13 11 33 33 H 1.09005 * 109.48678 * 60.64401 * 20 5 4 34 34 H 1.09004 * 109.48825 * 180.70927 * 20 5 4 35 35 H 1.08998 * 109.48984 * 296.78002 * 21 2 1 36 36 H 1.09004 * 109.48230 * 56.82233 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3289 -0.0802 5 7 4.0500 0.5657 1.0599 6 6 5.5190 0.5657 1.0600 7 6 6.0213 -0.0077 2.3600 8 7 6.2666 -1.2631 2.5633 9 6 6.6994 -1.6122 3.7458 10 6 6.8319 -0.5480 4.6235 11 6 7.2715 -0.6193 5.9513 12 1 7.3362 0.2788 6.5476 13 6 7.6273 -1.8554 6.5058 14 7 7.5484 -2.9437 5.7833 15 14 8.2130 -1.9506 8.2770 16 1 8.2116 -0.5903 8.8726 17 1 7.3036 -2.8320 9.0525 18 1 9.5901 -2.5051 8.3139 19 16 6.3508 0.9120 3.7620 20 6 3.5233 -0.8061 1.0599 21 6 1.9956 -0.7632 1.1402 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.6937 1.8773 0.9174 26 1 1.6014 1.9131 -0.8601 27 1 3.9178 2.3447 -0.0511 28 1 3.8257 0.8480 -1.0104 29 1 5.8824 -0.0413 0.2307 30 1 5.8824 1.5873 0.9490 31 1 6.9315 -2.6325 4.0135 32 1 7.7951 -3.7996 6.1672 33 1 3.8252 -1.3116 0.1426 34 1 3.9176 -1.3470 1.9202 35 1 1.6936 -0.2821 2.0705 36 1 1.6008 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082418152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = 41.044093 kcal Electronic energy + Delta-G solvation = -18041.098344 eV Core-core repulsion = 15265.386997 eV Total energy + Delta-G solvation = -2775.711347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 6.20 seconds Orbital eigenvalues (eV) -39.02359 -37.45127 -35.23587 -34.01535 -30.70961 -30.05925 -28.73404 -26.35523 -24.19597 -23.28327 -22.97644 -21.56799 -19.49630 -19.03826 -16.81774 -16.40699 -15.94729 -15.09059 -14.84874 -14.69780 -14.49844 -14.11984 -13.91254 -13.43098 -12.62577 -12.40731 -12.38474 -12.19179 -11.93984 -11.71056 -11.44207 -11.38833 -11.13156 -11.04697 -10.93649 -10.53904 -10.48226 -10.30408 -9.76056 -9.54524 -8.31603 -8.02864 -7.94159 -7.74069 -7.16928 -6.97246 -4.57105 2.39559 2.89788 2.96634 3.00263 3.25077 3.67504 3.75425 4.02171 4.21029 4.59228 5.06769 5.10180 5.16086 5.30970 5.41409 5.50226 5.64420 5.68549 5.72036 5.79694 5.85916 5.97935 6.05940 6.10012 6.22349 6.38507 6.52927 6.70207 7.06185 7.09869 7.15330 7.39772 7.53275 7.61689 7.79903 8.15381 8.36924 8.66253 9.81398 9.83694 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034413 B = 0.004450 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.441117 B = 6291.230344 C = 6585.718873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.059 3.941 4 C 0.056 3.944 5 N -0.535 5.535 6 C 0.169 3.831 7 C -0.124 4.124 8 N -0.424 5.424 9 C -0.139 4.139 10 C 0.012 3.988 11 C -0.375 4.375 12 H 0.087 0.913 13 C 0.065 3.935 14 N -0.766 5.766 15 Si 0.934 3.066 16 H -0.257 1.257 17 H -0.269 1.269 18 H -0.269 1.269 19 S -0.042 6.042 20 C 0.065 3.935 21 C 0.058 3.942 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.024 0.976 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.288 0.712 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.040 0.960 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 4.146 -5.240 9.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.069 4.069 4 C -0.073 4.073 5 N -0.260 5.260 6 C 0.039 3.961 7 C -0.392 4.392 8 N -0.137 5.137 9 C -0.293 4.293 10 C -0.109 4.109 11 C -0.413 4.413 12 H 0.105 0.895 13 C -0.158 4.158 14 N -0.391 5.391 15 Si 0.757 3.243 16 H -0.181 1.181 17 H -0.193 1.193 18 H -0.193 1.193 19 S 0.207 5.793 20 C -0.063 4.063 21 C -0.070 4.070 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.211 0.789 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.546 4.611 -5.621 10.478 hybrid contribution 0.379 -0.952 1.010 1.439 sum -7.167 3.659 -4.612 9.275 Atomic orbital electron populations 1.22324 0.87752 1.01831 1.00321 1.62189 1.07358 1.14078 1.43567 1.22136 0.95005 0.89213 1.00538 1.22113 0.93986 0.98569 0.92589 1.62207 1.08408 1.14212 1.41207 1.19955 0.85302 0.98585 0.92272 1.24679 1.23280 0.91956 0.99268 1.65428 1.09223 1.15582 1.23419 1.23089 1.17267 1.01717 0.87270 1.23359 0.97959 0.91771 0.97852 1.19077 1.32906 0.94710 0.94574 0.89499 1.26120 0.93875 0.94622 1.01200 1.69478 1.32430 1.00041 1.37131 0.85822 0.78989 0.79935 0.79582 1.18065 1.19347 1.19350 1.82951 1.69791 1.16011 1.10516 1.22072 0.92552 0.89721 1.01993 1.22217 0.95648 0.97788 0.91362 0.91676 0.91565 0.95776 0.94095 0.90813 0.90642 0.94504 0.94284 0.91167 0.78922 0.90010 0.94702 0.88790 0.94120 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.60 60.06 0.58 0.86 16 2 N -0.55 -7.62 4.97 -242.75 -1.21 -8.83 16 3 C 0.06 0.79 5.62 -3.77 -0.02 0.77 16 4 C 0.06 0.82 5.61 -3.77 -0.02 0.80 16 5 N -0.53 -9.73 4.70 -235.91 -1.11 -10.83 16 6 C 0.17 3.34 5.53 -4.97 -0.03 3.31 16 7 C -0.12 -2.95 6.03 -13.25 -0.08 -3.03 16 8 N -0.42 -11.12 9.60 -10.84 -0.10 -11.23 16 9 C -0.14 -3.83 10.55 -17.92 -0.19 -4.01 16 10 C 0.01 0.33 6.30 -38.78 -0.24 0.09 16 11 C -0.38 -9.53 9.42 -38.21 -0.36 -9.89 16 12 H 0.09 2.08 7.85 -52.49 -0.41 1.67 16 13 C 0.06 1.52 5.50 -17.28 -0.09 1.42 16 14 N -0.77 -18.64 10.18 55.56 0.57 -18.08 16 15 Si 0.93 17.33 29.56 -169.99 -5.03 12.30 16 16 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 17 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 18 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 19 S -0.04 -1.01 23.13 -107.50 -2.49 -3.50 16 20 C 0.06 1.19 5.43 -3.77 -0.02 1.17 16 21 C 0.06 0.90 5.62 -3.76 -0.02 0.88 16 22 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 23 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 31 H 0.19 5.47 5.36 -52.48 -0.28 5.19 16 32 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 2.04 6.54 -51.93 -0.34 1.70 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -27.70 304.18 -10.51 -38.21 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.23 Total: 5.01 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.50 Total: -7.64 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -1.85 Total: -48.97 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.49 Total: -3.50 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.70 -10.51 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.253 kcal (2) G-P(sol) polarization free energy of solvation -27.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.20 seconds