Wall clock time and date at job start Mon Mar 30 2020 06:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46899 * 109.47395 * 2 1 4 4 C 1.46954 * 111.00019 * 66.17684 * 3 2 1 5 5 C 1.53047 * 109.36863 * 183.16969 * 4 3 2 6 6 N 1.46958 * 109.38206 * 301.63400 * 5 4 3 7 7 C 1.37603 * 111.00186 * 183.17535 * 6 5 4 8 8 N 1.30647 * 125.13021 * 0.02562 * 7 6 5 9 9 C 1.30460 * 117.51511 * 179.97438 * 8 7 6 10 10 C 1.38462 * 114.86120 * 359.97438 * 9 8 7 11 11 C 1.39909 * 126.07181 * 179.97438 * 10 9 8 12 12 H 1.08010 * 119.99446 * 160.53900 * 11 10 9 13 13 C 1.39905 * 120.00752 * 340.53570 * 11 10 9 14 14 N 1.31000 * 120.00422 * 161.43652 * 13 11 10 15 15 Si 1.86800 * 119.99636 * 341.43665 * 13 11 10 16 16 H 1.48509 * 109.46995 * 93.79119 * 15 13 11 17 17 H 1.48500 * 109.47299 * 213.79194 * 15 13 11 18 18 H 1.48506 * 109.47187 * 333.79408 * 15 13 11 19 19 S 1.76081 * 125.13102 * 179.71690 * 7 6 5 20 20 C 1.46964 * 110.87930 * 59.30688 * 6 5 4 21 21 C 1.46958 * 111.00334 * 190.00146 * 3 2 1 22 22 H 1.08996 * 109.47483 * 60.00094 * 1 2 3 23 23 H 1.09003 * 109.47170 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47199 * 299.99817 * 1 2 3 25 25 H 1.09009 * 109.47088 * 239.99668 * 2 1 3 26 26 H 1.09003 * 109.47291 * 120.00546 * 2 1 3 27 27 H 1.09008 * 109.47121 * 63.21155 * 4 3 2 28 28 H 1.09007 * 109.50839 * 303.15362 * 4 3 2 29 29 H 1.09001 * 109.49198 * 181.65234 * 5 4 3 30 30 H 1.08997 * 109.48650 * 61.61000 * 5 4 3 31 31 H 1.07995 * 122.57050 * 180.02562 * 9 8 7 32 32 H 0.97001 * 120.00495 * 180.02562 * 14 13 11 33 33 H 1.08992 * 109.48758 * 60.64511 * 20 6 5 34 34 H 1.09001 * 109.48427 * 180.69351 * 20 6 5 35 35 H 1.09004 * 109.48602 * 56.83924 * 21 3 2 36 36 H 1.09001 * 109.48676 * 296.78242 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6728 2.0662 1.2550 5 6 2.1296 3.5252 1.1837 6 7 3.5790 3.5714 0.9454 7 6 4.0377 4.8687 0.9454 8 7 3.2963 5.9282 1.1314 9 6 3.8879 7.0906 1.1018 10 6 5.2526 7.0435 0.8726 11 6 6.1133 8.1437 0.7942 12 1 7.1766 8.0080 0.9263 13 6 5.5967 9.4198 0.5447 14 7 6.3108 10.4818 0.8242 15 14 3.8883 9.6090 -0.1869 16 1 2.8979 9.7810 0.9063 17 1 3.8587 10.7999 -1.0736 18 1 3.5502 8.3965 -0.9749 19 16 5.7136 5.3508 0.7023 20 6 3.9254 2.8902 -0.3100 21 6 3.4691 1.4311 -0.2383 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.1709 1.5695 2.0878 28 1 0.5934 2.0298 1.4027 29 1 1.8996 4.0248 2.1248 30 1 1.6108 4.0291 0.3682 31 1 3.3544 8.0184 1.2459 32 1 5.9525 11.3665 0.6515 33 1 3.4269 3.3866 -1.1425 34 1 5.0047 2.9272 -0.4579 35 1 3.6990 0.9315 -1.1794 36 1 3.9879 0.9274 0.5774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082418762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:43 Heat of formation + Delta-G solvation = 45.623785 kcal Electronic energy + Delta-G solvation = -18148.488106 eV Core-core repulsion = 15372.975350 eV Total energy + Delta-G solvation = -2775.512756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.38485 -37.63475 -35.46967 -33.92585 -31.25557 -30.61588 -29.81113 -26.50459 -24.09256 -23.60809 -22.54160 -21.64019 -20.14061 -19.13261 -17.56376 -16.65985 -15.83582 -15.14780 -15.06536 -14.62457 -14.53201 -14.38744 -13.98420 -13.65378 -13.25113 -12.87311 -12.50780 -12.37732 -12.01415 -11.89104 -11.42233 -11.30721 -11.16518 -11.11737 -11.00849 -10.65428 -10.58629 -10.40472 -9.82449 -9.44566 -8.84778 -8.35063 -8.28960 -8.07008 -7.37096 -7.06502 -4.63548 2.13157 2.70517 2.98987 3.04506 3.20139 3.26703 3.79026 3.90064 3.98409 4.57172 4.82160 4.88693 5.04002 5.13316 5.30539 5.39392 5.50310 5.55011 5.62405 5.66571 5.79788 5.83785 5.96201 5.99455 6.12680 6.25347 6.30368 6.45678 6.61574 6.86724 7.05484 7.07736 7.19239 7.40671 7.75476 7.84016 8.21528 8.22272 9.37877 9.59685 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041035 B = 0.004767 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.173050 B = 5872.571435 C = 6259.506372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.055 3.945 5 C 0.079 3.921 6 N -0.437 5.437 7 C 0.075 3.925 8 N -0.436 5.436 9 C -0.183 4.183 10 C 0.007 3.993 11 C -0.360 4.360 12 H 0.101 0.899 13 C 0.088 3.912 14 N -0.772 5.772 15 Si 0.924 3.076 16 H -0.263 1.263 17 H -0.287 1.287 18 H -0.238 1.238 19 S -0.039 6.039 20 C 0.058 3.942 21 C 0.061 3.939 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.140 0.860 32 H 0.297 0.703 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 -12.891 -2.433 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 N -0.267 5.267 4 C -0.073 4.073 5 C -0.051 4.051 6 N -0.159 5.159 7 C -0.286 4.286 8 N -0.151 5.151 9 C -0.335 4.335 10 C -0.115 4.115 11 C -0.397 4.397 12 H 0.119 0.881 13 C -0.139 4.139 14 N -0.394 5.394 15 Si 0.749 3.251 16 H -0.189 1.189 17 H -0.214 1.214 18 H -0.161 1.161 19 S 0.210 5.790 20 C -0.070 4.070 21 C -0.067 4.067 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.157 0.843 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.203 -13.382 -2.491 14.959 hybrid contribution -0.878 1.085 0.063 1.397 sum -7.081 -12.298 -2.428 14.397 Atomic orbital electron populations 1.21797 0.95019 1.01229 1.02598 1.22041 0.96036 0.89088 1.00517 1.62191 1.14062 1.15301 1.35159 1.22296 1.00372 0.94665 0.89966 1.21897 0.86463 0.94334 1.02450 1.59063 1.14183 1.11038 1.31615 1.23732 0.90626 0.90632 1.23568 1.65600 1.37814 0.98216 1.13485 1.20942 0.91575 0.94063 1.26915 1.22894 0.95925 0.94056 0.98648 1.18799 0.96587 0.88859 1.35444 0.88114 1.26268 1.00794 0.94544 0.92342 1.69680 1.38969 1.00191 1.30518 0.86071 0.79862 0.78855 0.80280 1.18862 1.21449 1.16136 1.84051 1.12596 1.04286 1.78066 1.22339 1.00698 0.93126 0.90882 1.22143 0.87233 0.96595 1.00739 0.91880 0.92544 0.92605 0.91012 0.95064 0.94253 0.90199 0.89841 0.93323 0.84303 0.89217 0.93631 0.90212 0.90405 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.85 37.15 0.37 -1.00 16 2 C 0.05 0.53 5.68 -3.83 -0.02 0.51 16 3 N -0.54 -7.24 4.71 -234.46 -1.10 -8.34 16 4 C 0.06 0.77 5.41 -3.77 -0.02 0.75 16 5 C 0.08 1.40 4.92 -3.77 -0.02 1.38 16 6 N -0.44 -8.57 4.75 -173.67 -0.83 -9.39 16 7 C 0.08 1.75 6.89 -87.86 -0.61 1.14 16 8 N -0.44 -11.00 9.43 -13.12 -0.12 -11.12 16 9 C -0.18 -4.74 8.83 -18.05 -0.16 -4.90 16 10 C 0.01 0.18 5.82 -38.87 -0.23 -0.05 16 11 C -0.36 -9.29 9.89 -38.33 -0.38 -9.66 16 12 H 0.10 2.65 8.06 -52.48 -0.42 2.23 16 13 C 0.09 2.16 5.49 -17.28 -0.09 2.06 16 14 N -0.77 -18.84 13.94 55.55 0.77 -18.06 16 15 Si 0.92 20.24 24.56 -169.99 -4.17 16.07 16 16 H -0.26 -5.70 6.73 56.52 0.38 -5.32 16 17 H -0.29 -5.91 7.11 56.52 0.40 -5.50 16 18 H -0.24 -5.58 6.63 56.52 0.37 -5.21 16 19 S -0.04 -0.90 22.58 -107.50 -2.43 -3.33 16 20 C 0.06 0.98 5.47 -3.76 -0.02 0.96 16 21 C 0.06 0.83 5.61 -3.77 -0.02 0.81 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.52 6.49 -51.93 -0.34 0.18 16 25 H 0.07 0.68 8.03 -51.92 -0.42 0.26 16 26 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 27 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 28 H 0.08 0.98 6.34 -51.93 -0.33 0.65 16 29 H 0.08 1.55 7.97 -51.93 -0.41 1.14 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.14 3.54 4.14 -52.49 -0.22 3.32 16 32 H 0.30 6.45 8.30 -40.82 -0.34 6.11 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.34 7.47 -51.93 -0.39 0.95 16 35 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 296.12 15.07 4.46 4.46 Total: -1.00 -27.41 296.12 -9.71 -37.11 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.09 Total: 0.59 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.20 Total: -7.99 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -1.28 Total: -46.92 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.17 Total: 16.07 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.43 Total: -3.33 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.41 -9.71 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.737 kcal (2) G-P(sol) polarization free energy of solvation -27.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds