Wall clock time and date at job start Mon Mar 30 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46899 * 109.47395 * 2 1 4 4 C 1.46954 * 111.00019 * 66.17684 * 3 2 1 5 5 C 1.53047 * 109.36863 * 183.16969 * 4 3 2 6 6 N 1.46958 * 109.38206 * 301.63400 * 5 4 3 7 7 C 1.37603 * 111.00186 * 183.17535 * 6 5 4 8 8 N 1.30647 * 125.13021 * 0.02562 * 7 6 5 9 9 C 1.30460 * 117.51511 * 179.97438 * 8 7 6 10 10 C 1.38462 * 114.86120 * 359.97438 * 9 8 7 11 11 C 1.39909 * 126.07181 * 179.97438 * 10 9 8 12 12 H 1.08010 * 119.99446 * 160.53900 * 11 10 9 13 13 C 1.39905 * 120.00752 * 340.53570 * 11 10 9 14 14 N 1.31000 * 120.00422 * 161.43652 * 13 11 10 15 15 Si 1.86800 * 119.99636 * 341.43665 * 13 11 10 16 16 H 1.48509 * 109.46995 * 93.79119 * 15 13 11 17 17 H 1.48500 * 109.47299 * 213.79194 * 15 13 11 18 18 H 1.48506 * 109.47187 * 333.79408 * 15 13 11 19 19 S 1.76081 * 125.13102 * 179.71690 * 7 6 5 20 20 C 1.46964 * 110.87930 * 59.30688 * 6 5 4 21 21 C 1.46958 * 111.00334 * 190.00146 * 3 2 1 22 22 H 1.08996 * 109.47483 * 60.00094 * 1 2 3 23 23 H 1.09003 * 109.47170 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47199 * 299.99817 * 1 2 3 25 25 H 1.09009 * 109.47088 * 239.99668 * 2 1 3 26 26 H 1.09003 * 109.47291 * 120.00546 * 2 1 3 27 27 H 1.09008 * 109.47121 * 63.21155 * 4 3 2 28 28 H 1.09007 * 109.50839 * 303.15362 * 4 3 2 29 29 H 1.09001 * 109.49198 * 181.65234 * 5 4 3 30 30 H 1.08997 * 109.48650 * 61.61000 * 5 4 3 31 31 H 1.07995 * 122.57050 * 180.02562 * 9 8 7 32 32 H 0.97001 * 120.00495 * 180.02562 * 14 13 11 33 33 H 1.08992 * 109.48758 * 60.64511 * 20 6 5 34 34 H 1.09001 * 109.48427 * 180.69351 * 20 6 5 35 35 H 1.09004 * 109.48602 * 56.83924 * 21 3 2 36 36 H 1.09001 * 109.48676 * 296.78242 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6728 2.0662 1.2550 5 6 2.1296 3.5252 1.1837 6 7 3.5790 3.5714 0.9454 7 6 4.0377 4.8687 0.9454 8 7 3.2963 5.9282 1.1314 9 6 3.8879 7.0906 1.1018 10 6 5.2526 7.0435 0.8726 11 6 6.1133 8.1437 0.7942 12 1 7.1766 8.0080 0.9263 13 6 5.5967 9.4198 0.5447 14 7 6.3108 10.4818 0.8242 15 14 3.8883 9.6090 -0.1869 16 1 2.8979 9.7810 0.9063 17 1 3.8587 10.7999 -1.0736 18 1 3.5502 8.3965 -0.9749 19 16 5.7136 5.3508 0.7023 20 6 3.9254 2.8902 -0.3100 21 6 3.4691 1.4311 -0.2383 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.1709 1.5695 2.0878 28 1 0.5934 2.0298 1.4027 29 1 1.8996 4.0248 2.1248 30 1 1.6108 4.0291 0.3682 31 1 3.3544 8.0184 1.2459 32 1 5.9525 11.3665 0.6515 33 1 3.4269 3.3866 -1.1425 34 1 5.0047 2.9272 -0.4579 35 1 3.6990 0.9315 -1.1794 36 1 3.9879 0.9274 0.5774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082418762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:36 Heat of formation + Delta-G solvation = 26.990818 kcal Electronic energy + Delta-G solvation = -18149.296092 eV Core-core repulsion = 15372.975350 eV Total energy + Delta-G solvation = -2776.320742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 7.22 seconds Orbital eigenvalues (eV) -40.81625 -39.31446 -36.89889 -35.72453 -32.53673 -31.94588 -31.34998 -27.87360 -25.83251 -24.92977 -24.30135 -22.65292 -21.69033 -20.66650 -19.30183 -18.51251 -17.18777 -16.89121 -16.18610 -16.12341 -16.01139 -15.55081 -15.44830 -15.29432 -14.73454 -14.57132 -14.02727 -13.61427 -13.40612 -13.15993 -12.96578 -12.73175 -12.69403 -12.38499 -12.28340 -12.12974 -11.82687 -11.69154 -11.59934 -11.27560 -10.57945 -10.26827 -9.96530 -9.30872 -9.23785 -8.90316 -6.57745 0.24481 0.82145 1.20861 1.24122 1.37421 1.41513 2.00579 2.10709 2.79521 2.90529 3.04527 3.81773 3.97969 4.03400 4.19136 4.31735 4.33508 4.42003 4.53502 4.55196 4.66706 4.75286 4.78230 4.86411 4.89993 4.95322 5.00858 5.06596 5.14773 5.30529 5.39841 5.78357 5.79214 5.93819 6.07147 6.13665 6.30099 6.40067 7.45101 7.79284 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041035 B = 0.004767 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.173050 B = 5872.571435 C = 6259.506372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 N -0.554 5.554 4 C 0.067 3.933 5 C 0.082 3.918 6 N -0.442 5.442 7 C 0.095 3.905 8 N -0.462 5.462 9 C -0.201 4.201 10 C -0.014 4.014 11 C -0.387 4.387 12 H 0.083 0.917 13 C 0.066 3.934 14 N -0.792 5.792 15 Si 0.970 3.030 16 H -0.261 1.261 17 H -0.261 1.261 18 H -0.265 1.265 19 S -0.014 6.014 20 C 0.058 3.942 21 C 0.069 3.931 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.139 0.861 32 H 0.311 0.689 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.728 -14.981 -2.942 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 N -0.280 5.280 4 C -0.062 4.062 5 C -0.048 4.048 6 N -0.165 5.165 7 C -0.268 4.268 8 N -0.178 5.178 9 C -0.350 4.350 10 C -0.136 4.136 11 C -0.424 4.424 12 H 0.101 0.899 13 C -0.160 4.160 14 N -0.415 5.415 15 Si 0.794 3.206 16 H -0.187 1.187 17 H -0.186 1.186 18 H -0.189 1.189 19 S 0.235 5.765 20 C -0.069 4.069 21 C -0.059 4.059 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.155 0.845 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.318 -15.440 -3.002 17.348 hybrid contribution -0.540 1.525 0.227 1.634 sum -7.858 -13.915 -2.774 16.219 Atomic orbital electron populations 1.21783 0.94119 1.02401 1.02061 1.22137 0.96731 0.87205 1.01504 1.62198 1.13838 1.17354 1.34597 1.22177 1.01467 0.91916 0.90607 1.21918 0.84954 0.97038 1.00930 1.59110 1.15406 1.08780 1.33196 1.24370 0.90851 0.91758 1.19836 1.65658 1.38228 0.98469 1.15440 1.21019 0.91827 0.94492 1.27704 1.23013 0.96100 0.95268 0.99249 1.18771 0.95837 0.89965 1.37790 0.89850 1.26708 1.02927 0.94037 0.92324 1.69651 1.40085 1.00922 1.30864 0.85378 0.76993 0.78524 0.79670 1.18684 1.18613 1.18905 1.83862 1.12270 1.02728 1.77655 1.22418 1.00728 0.95058 0.88733 1.22109 0.87560 0.93868 1.02381 0.92653 0.90577 0.92879 0.89635 0.94383 0.93917 0.88242 0.91187 0.95174 0.84462 0.87778 0.95038 0.90170 0.87758 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.85 71.98 0.71 -1.49 16 2 C 0.05 0.88 5.68 86.30 0.49 1.37 16 3 N -0.55 -13.15 4.71 -895.70 -4.22 -17.37 16 4 C 0.07 1.71 5.41 86.31 0.47 2.18 16 5 C 0.08 2.82 4.92 86.31 0.42 3.25 16 6 N -0.44 -16.89 4.75 -703.36 -3.34 -20.24 16 7 C 0.10 4.40 6.89 179.38 1.24 5.63 16 8 N -0.46 -23.48 9.43 -195.41 -1.84 -25.32 16 9 C -0.20 -10.54 8.83 84.95 0.75 -9.79 16 10 C -0.01 -0.74 5.82 22.73 0.13 -0.61 16 11 C -0.39 -20.50 9.89 23.08 0.23 -20.28 16 12 H 0.08 4.57 8.06 -2.91 -0.02 4.54 16 13 C 0.07 3.25 5.49 85.22 0.47 3.72 16 14 N -0.79 -38.82 13.94 21.83 0.30 -38.52 16 15 Si 0.97 41.87 24.56 68.60 1.68 43.55 16 16 H -0.26 -11.09 6.73 99.48 0.67 -10.42 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.26 -12.48 6.63 99.48 0.66 -11.83 16 19 S -0.01 -0.66 22.58 -56.49 -1.28 -1.93 16 20 C 0.06 1.88 5.47 86.31 0.47 2.36 16 21 C 0.07 1.66 5.61 86.31 0.48 2.15 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.83 6.49 -2.39 -0.02 0.81 16 25 H 0.09 1.27 8.03 -2.38 -0.02 1.25 16 26 H 0.04 0.63 8.12 -2.39 -0.02 0.61 16 27 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.10 2.18 6.34 -2.38 -0.02 2.17 16 29 H 0.07 2.59 7.97 -2.39 -0.02 2.57 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.14 7.11 4.14 -2.91 -0.01 7.10 16 32 H 0.31 13.34 8.30 -92.71 -0.77 12.57 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 2.56 7.47 -2.39 -0.02 2.54 16 35 H 0.10 2.01 8.07 -2.38 -0.02 1.99 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -58.80 296.12 -1.84 -60.64 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.99 Total: 10.70 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 5.86 Total: -11.52 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -9.10 Total: -101.44 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.68 Total: 43.55 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -1.28 Total: -1.93 kcal Total: -58.80 -1.84 -60.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.632 kcal (2) G-P(sol) polarization free energy of solvation -58.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.22 seconds