Wall clock time and date at job start Mon Mar 30 2020 05:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30454 * 122.56661 * 2 1 4 4 C 1.30646 * 117.51168 * 179.97438 * 3 2 1 5 5 N 1.37610 * 125.13207 * 180.02562 * 4 3 2 6 6 C 1.46961 * 111.00037 * 123.82788 * 5 4 3 7 7 C 1.53046 * 109.36568 * 176.81779 * 6 5 4 8 8 N 1.46953 * 109.36660 * 58.39723 * 7 6 5 9 9 C 1.46904 * 111.00015 * 176.81277 * 8 7 6 10 10 C 1.46954 * 110.88059 * 300.68037 * 8 7 6 11 11 C 1.46953 * 110.99752 * 0.03201 * 5 4 3 12 12 S 1.76075 * 109.74078 * 0.02562 * 4 3 2 13 13 C 1.38458 * 122.56497 * 179.97438 * 2 1 3 14 14 C 1.39910 * 126.08199 * 0.04024 * 13 2 1 15 15 H 1.08004 * 119.99933 * 353.54263 * 14 13 2 16 16 C 1.39898 * 120.00565 * 173.54751 * 14 13 2 17 17 N 1.31011 * 119.99944 * 6.51186 * 16 14 13 18 18 Si 1.86800 * 120.00597 * 186.51762 * 16 14 13 19 19 H 1.48501 * 109.47096 * 94.97978 * 18 16 14 20 20 H 1.48491 * 109.47247 * 214.98298 * 18 16 14 21 21 H 1.48502 * 109.46873 * 334.98548 * 18 16 14 22 22 H 1.09000 * 109.47357 * 90.02238 * 1 2 3 23 23 H 1.09006 * 109.47168 * 210.01758 * 1 2 3 24 24 H 1.08993 * 109.47270 * 330.02177 * 1 2 3 25 25 H 1.09001 * 109.48468 * 296.78319 * 6 5 4 26 26 H 1.08999 * 109.48783 * 56.84254 * 6 5 4 27 27 H 1.09003 * 109.48389 * 298.43000 * 7 6 5 28 28 H 1.09000 * 109.50596 * 178.37930 * 7 6 5 29 29 H 1.08997 * 109.47225 * 183.79919 * 9 8 7 30 30 H 1.09004 * 109.47256 * 303.80516 * 9 8 7 31 31 H 1.09007 * 109.47066 * 63.80012 * 9 8 7 32 32 H 1.08996 * 109.49218 * 299.35208 * 10 8 7 33 33 H 1.09005 * 109.50628 * 179.30016 * 10 8 7 34 34 H 1.09005 * 109.48810 * 303.14702 * 11 5 4 35 35 H 1.08995 * 109.49564 * 63.21657 * 11 5 4 36 36 H 0.96998 * 120.00376 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2092 1.0994 0.0000 4 6 3.5106 0.9843 0.0005 5 7 4.3986 2.0356 0.0011 6 6 5.3214 1.9448 1.1412 7 6 6.3399 3.0844 1.0616 8 7 5.6316 4.3720 1.0623 9 6 6.5795 5.4943 1.0630 10 6 4.7089 4.4627 -0.0778 11 6 3.6903 3.3231 0.0018 12 16 3.9570 -0.7189 0.0004 13 6 2.2523 -1.1669 0.0005 14 6 1.7428 -2.4700 0.0003 15 1 0.6805 -2.6345 0.1049 16 6 2.6093 -3.5599 -0.1352 17 7 3.9057 -3.3703 -0.1337 18 14 1.9182 -5.2856 -0.3186 19 1 1.8269 -5.6318 -1.7598 20 1 2.8127 -6.2525 0.3671 21 1 0.5654 -5.3444 0.2912 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3634 -0.8899 0.5141 24 1 -0.3633 0.8901 0.5135 25 1 4.7589 2.0241 2.0715 26 1 5.8429 0.9881 1.1117 27 1 6.9209 2.9894 0.1442 28 1 7.0079 3.0363 1.9217 29 1 6.0306 6.4334 1.1315 30 1 7.2507 5.4025 1.9169 31 1 7.1607 5.4796 0.1409 32 1 5.2713 4.3834 -1.0081 33 1 4.1873 5.4194 -0.0487 34 1 3.0227 3.3714 -0.8585 35 1 3.1093 3.4182 0.9191 36 1 4.5065 -4.1259 -0.2281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082422220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:08 Heat of formation + Delta-G solvation = 33.728165 kcal Electronic energy + Delta-G solvation = -18272.451371 eV Core-core repulsion = 15496.422782 eV Total energy + Delta-G solvation = -2776.028589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -39.08993 -37.37224 -35.03345 -33.87605 -30.64998 -30.11535 -28.13104 -27.62254 -24.08420 -23.67817 -23.13443 -21.33655 -19.46972 -18.48438 -17.26562 -16.09052 -15.73852 -14.90413 -14.79450 -14.58531 -14.26412 -14.12104 -13.72882 -12.95701 -12.67131 -12.26636 -12.19538 -11.93534 -11.88326 -11.61499 -11.54265 -11.48371 -11.02499 -10.90121 -10.80285 -10.62802 -10.49949 -10.33215 -9.85357 -9.25055 -8.58199 -8.18604 -7.93329 -7.58925 -7.05256 -6.75169 -4.45963 2.44884 2.88661 2.94796 3.01023 3.20656 3.62734 3.86463 4.08447 4.14588 4.78450 5.03551 5.18035 5.19664 5.43540 5.48113 5.69827 5.71650 5.77193 5.84119 5.92708 6.06861 6.15376 6.39773 6.45263 6.56609 6.65177 6.72324 6.80426 6.85936 7.13055 7.16285 7.24559 7.54035 7.62716 7.87041 8.10775 8.36721 8.56058 9.74521 9.76818 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.036637 B = 0.005183 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.077866 B = 5401.447361 C = 6042.939911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 C -0.143 4.143 3 N -0.454 5.454 4 C 0.017 3.983 5 N -0.434 5.434 6 C 0.059 3.941 7 C 0.060 3.940 8 N -0.546 5.546 9 C 0.027 3.973 10 C 0.057 3.943 11 C 0.078 3.922 12 S 0.114 5.886 13 C 0.003 3.997 14 C -0.370 4.370 15 H 0.100 0.900 16 C 0.049 3.951 17 N -0.779 5.779 18 Si 0.937 3.063 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.257 1.257 22 H 0.035 0.965 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 5.810 1.211 7.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.277 4.277 3 N -0.171 5.171 4 C -0.344 4.344 5 N -0.156 5.156 6 C -0.070 4.070 7 C -0.068 4.068 8 N -0.271 5.271 9 C -0.122 4.122 10 C -0.072 4.072 11 C -0.053 4.053 12 S 0.364 5.636 13 C -0.120 4.120 14 C -0.407 4.407 15 H 0.118 0.882 16 C -0.172 4.172 17 N -0.406 5.406 18 Si 0.760 3.240 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.181 1.181 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.094 5.786 1.203 7.802 hybrid contribution -0.986 -0.752 -0.255 1.266 sum 4.108 5.034 0.948 6.567 Atomic orbital electron populations 1.19646 0.90386 0.99712 0.99222 1.19528 0.95410 0.86090 1.26708 1.65480 1.04662 1.33213 1.13711 1.24894 0.90174 0.96206 1.23123 1.59217 1.17113 1.00261 1.38979 1.22304 0.94361 0.97772 0.92559 1.22173 0.95502 0.88511 1.00635 1.62162 1.19052 1.02493 1.43420 1.22326 0.95401 0.94241 1.00213 1.22268 0.94657 0.98886 0.91367 1.21855 0.94364 0.86919 1.02122 1.84978 1.07843 0.95065 1.75727 1.22830 0.93389 0.97050 0.98774 1.19122 0.95987 0.88499 1.37111 0.88240 1.26216 0.94543 1.03231 0.93228 1.68988 1.03478 1.34794 1.33306 0.85772 0.79986 0.78648 0.79583 1.19013 1.19744 1.18068 0.94578 0.93087 0.94085 0.93971 0.90187 0.94110 0.90549 0.91620 0.91639 0.95851 0.94316 0.90679 0.90113 0.93652 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.67 10.04 36.01 0.36 -0.30 16 2 C -0.14 -3.72 6.84 -83.10 -0.57 -4.29 16 3 N -0.45 -11.86 9.41 -9.32 -0.09 -11.94 16 4 C 0.02 0.41 6.89 -87.86 -0.61 -0.19 16 5 N -0.43 -9.24 4.75 -173.67 -0.83 -10.06 16 6 C 0.06 1.09 5.46 -3.77 -0.02 1.07 16 7 C 0.06 0.91 5.62 -3.77 -0.02 0.89 16 8 N -0.55 -8.08 4.97 -242.75 -1.21 -9.28 16 9 C 0.03 0.30 9.60 60.07 0.58 0.88 16 10 C 0.06 0.87 5.62 -3.77 -0.02 0.85 16 11 C 0.08 1.50 4.92 -3.77 -0.02 1.48 16 12 S 0.11 2.88 19.68 -107.50 -2.12 0.76 16 13 C 0.00 0.09 6.23 -38.87 -0.24 -0.16 16 14 C -0.37 -9.27 8.89 -38.33 -0.34 -9.61 16 15 H 0.10 2.34 6.81 -52.48 -0.36 1.98 16 16 C 0.05 1.13 5.49 -17.28 -0.09 1.03 16 17 N -0.78 -18.68 10.78 55.55 0.60 -18.08 16 18 Si 0.94 17.30 29.57 -169.99 -5.03 12.28 16 19 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 20 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 1.05 7.00 -51.93 -0.36 0.69 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.51 7.47 -51.93 -0.39 1.12 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.02 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.63 7.97 -51.93 -0.41 1.21 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.30 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -28.38 303.16 -10.39 -38.77 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.31 Total: 1.36 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.00 Total: -8.36 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -1.52 Total: -49.37 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.12 Total: 0.76 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.38 -10.39 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082422220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.497 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds