Wall clock time and date at job start Mon Mar 30 2020 05:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30454 * 122.56661 * 2 1 4 4 C 1.30646 * 117.51168 * 179.97438 * 3 2 1 5 5 N 1.37610 * 125.13207 * 180.02562 * 4 3 2 6 6 C 1.46961 * 111.00037 * 123.82788 * 5 4 3 7 7 C 1.53046 * 109.36568 * 176.81779 * 6 5 4 8 8 N 1.46953 * 109.36660 * 58.39723 * 7 6 5 9 9 C 1.46904 * 111.00015 * 176.81277 * 8 7 6 10 10 C 1.46954 * 110.88059 * 300.68037 * 8 7 6 11 11 C 1.46953 * 110.99752 * 0.03201 * 5 4 3 12 12 S 1.76075 * 109.74078 * 0.02562 * 4 3 2 13 13 C 1.38458 * 122.56497 * 179.97438 * 2 1 3 14 14 C 1.39910 * 126.08199 * 0.04024 * 13 2 1 15 15 H 1.08004 * 119.99933 * 353.54263 * 14 13 2 16 16 C 1.39898 * 120.00565 * 173.54751 * 14 13 2 17 17 N 1.31011 * 119.99944 * 6.51186 * 16 14 13 18 18 Si 1.86800 * 120.00597 * 186.51762 * 16 14 13 19 19 H 1.48501 * 109.47096 * 94.97978 * 18 16 14 20 20 H 1.48491 * 109.47247 * 214.98298 * 18 16 14 21 21 H 1.48502 * 109.46873 * 334.98548 * 18 16 14 22 22 H 1.09000 * 109.47357 * 90.02238 * 1 2 3 23 23 H 1.09006 * 109.47168 * 210.01758 * 1 2 3 24 24 H 1.08993 * 109.47270 * 330.02177 * 1 2 3 25 25 H 1.09001 * 109.48468 * 296.78319 * 6 5 4 26 26 H 1.08999 * 109.48783 * 56.84254 * 6 5 4 27 27 H 1.09003 * 109.48389 * 298.43000 * 7 6 5 28 28 H 1.09000 * 109.50596 * 178.37930 * 7 6 5 29 29 H 1.08997 * 109.47225 * 183.79919 * 9 8 7 30 30 H 1.09004 * 109.47256 * 303.80516 * 9 8 7 31 31 H 1.09007 * 109.47066 * 63.80012 * 9 8 7 32 32 H 1.08996 * 109.49218 * 299.35208 * 10 8 7 33 33 H 1.09005 * 109.50628 * 179.30016 * 10 8 7 34 34 H 1.09005 * 109.48810 * 303.14702 * 11 5 4 35 35 H 1.08995 * 109.49564 * 63.21657 * 11 5 4 36 36 H 0.96998 * 120.00376 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2092 1.0994 0.0000 4 6 3.5106 0.9843 0.0005 5 7 4.3986 2.0356 0.0011 6 6 5.3214 1.9448 1.1412 7 6 6.3399 3.0844 1.0616 8 7 5.6316 4.3720 1.0623 9 6 6.5795 5.4943 1.0630 10 6 4.7089 4.4627 -0.0778 11 6 3.6903 3.3231 0.0018 12 16 3.9570 -0.7189 0.0004 13 6 2.2523 -1.1669 0.0005 14 6 1.7428 -2.4700 0.0003 15 1 0.6805 -2.6345 0.1049 16 6 2.6093 -3.5599 -0.1352 17 7 3.9057 -3.3703 -0.1337 18 14 1.9182 -5.2856 -0.3186 19 1 1.8269 -5.6318 -1.7598 20 1 2.8127 -6.2525 0.3671 21 1 0.5654 -5.3444 0.2912 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3634 -0.8899 0.5141 24 1 -0.3633 0.8901 0.5135 25 1 4.7589 2.0241 2.0715 26 1 5.8429 0.9881 1.1117 27 1 6.9209 2.9894 0.1442 28 1 7.0079 3.0363 1.9217 29 1 6.0306 6.4334 1.1315 30 1 7.2507 5.4025 1.9169 31 1 7.1607 5.4796 0.1409 32 1 5.2713 4.3834 -1.0081 33 1 4.1873 5.4194 -0.0487 34 1 3.0227 3.3714 -0.8585 35 1 3.1093 3.4182 0.9191 36 1 4.5065 -4.1259 -0.2281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082422220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:07 Heat of formation + Delta-G solvation = 15.090442 kcal Electronic energy + Delta-G solvation = -18273.259563 eV Core-core repulsion = 15496.422782 eV Total energy + Delta-G solvation = -2776.836781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.61076 -39.10727 -36.59813 -35.60031 -32.12156 -31.81209 -29.84524 -29.07072 -25.76692 -25.10228 -24.58467 -23.00757 -20.95457 -20.30453 -19.07279 -17.77399 -17.54511 -16.36873 -16.02252 -15.94597 -15.80513 -15.52632 -15.29313 -14.68755 -14.34242 -13.83786 -13.63126 -13.48977 -13.38448 -13.21152 -13.08327 -12.83618 -12.62833 -12.41793 -12.29282 -12.03719 -11.90340 -11.87256 -11.54792 -11.19247 -10.33830 -9.87432 -9.52892 -9.32570 -8.85977 -8.67252 -6.36373 0.60949 1.28830 1.37398 1.50367 1.55498 1.84763 2.14849 2.30077 2.96322 3.02536 3.24634 3.88138 4.05639 4.11673 4.24701 4.38124 4.43386 4.58127 4.66066 4.67854 4.78046 4.82816 4.91443 4.92420 4.96617 5.02975 5.04445 5.05533 5.12379 5.37580 5.70483 5.87594 5.98653 6.07509 6.12063 6.25053 6.49131 6.70193 7.81336 8.00567 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.036637 B = 0.005183 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.077866 B = 5401.447361 C = 6042.939911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.178 4.178 3 N -0.473 5.473 4 C 0.015 3.985 5 N -0.441 5.441 6 C 0.061 3.939 7 C 0.069 3.931 8 N -0.560 5.560 9 C 0.028 3.972 10 C 0.067 3.933 11 C 0.083 3.917 12 S 0.092 5.908 13 C -0.026 4.026 14 C -0.392 4.392 15 H 0.110 0.890 16 C 0.011 3.989 17 N -0.802 5.802 18 Si 1.013 2.987 19 H -0.261 1.261 20 H -0.262 1.262 21 H -0.249 1.249 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.024 0.976 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.023 0.977 36 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 5.727 1.304 7.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.311 4.311 3 N -0.190 5.190 4 C -0.347 4.347 5 N -0.163 5.163 6 C -0.067 4.067 7 C -0.059 4.059 8 N -0.286 5.286 9 C -0.120 4.120 10 C -0.061 4.061 11 C -0.047 4.047 12 S 0.342 5.658 13 C -0.149 4.149 14 C -0.428 4.428 15 H 0.127 0.873 16 C -0.207 4.207 17 N -0.429 5.429 18 Si 0.831 3.169 19 H -0.185 1.185 20 H -0.186 1.186 21 H -0.172 1.172 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.706 5.738 1.303 8.197 hybrid contribution -1.101 -0.707 -0.275 1.337 sum 4.605 5.031 1.029 6.898 Atomic orbital electron populations 1.19628 0.88248 1.00417 0.99878 1.20123 0.97162 0.86088 1.27744 1.65550 1.05230 1.33482 1.14752 1.25312 0.90408 0.96923 1.22025 1.59231 1.16743 1.00192 1.40153 1.22323 0.94301 0.99426 0.90644 1.22117 0.94379 0.87432 1.02002 1.62152 1.20110 1.03302 1.43010 1.22406 0.95096 0.93182 1.01275 1.22163 0.94080 0.97951 0.91909 1.21827 0.95250 0.87411 1.00203 1.84802 1.08272 0.96105 1.76647 1.23219 0.93746 0.98134 0.99843 1.19516 0.96968 0.88710 1.37576 0.87251 1.27256 0.94526 1.07113 0.91825 1.69020 1.04783 1.36604 1.32478 0.84670 0.79576 0.72923 0.79694 1.18507 1.18624 1.17248 0.93840 0.92147 0.93493 0.95807 0.90920 0.93781 0.87900 0.90246 0.90128 0.95088 0.94015 0.88252 0.91749 0.95846 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.99 10.04 71.24 0.72 -0.28 16 2 C -0.18 -9.52 6.84 42.82 0.29 -9.22 16 3 N -0.47 -25.54 9.41 -183.40 -1.73 -27.26 16 4 C 0.01 0.75 6.89 179.38 1.24 1.99 16 5 N -0.44 -19.15 4.75 -703.37 -3.34 -22.50 16 6 C 0.06 2.31 5.46 86.31 0.47 2.78 16 7 C 0.07 1.96 5.62 86.31 0.49 2.45 16 8 N -0.56 -15.33 4.97 -921.93 -4.58 -19.91 16 9 C 0.03 0.53 9.60 127.69 1.23 1.76 16 10 C 0.07 1.97 5.62 86.31 0.49 2.45 16 11 C 0.08 3.25 4.92 86.31 0.42 3.67 16 12 S 0.09 4.80 19.68 -56.49 -1.11 3.69 16 13 C -0.03 -1.42 6.23 22.73 0.14 -1.28 16 14 C -0.39 -19.73 8.89 23.08 0.21 -19.52 16 15 H 0.11 5.12 6.81 -2.91 -0.02 5.10 16 16 C 0.01 0.51 5.49 85.22 0.47 0.98 16 17 N -0.80 -38.44 10.78 21.83 0.24 -38.21 16 18 Si 1.01 34.17 29.57 68.60 2.03 36.20 16 19 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 20 H -0.26 -8.35 7.11 99.48 0.71 -7.65 16 21 H -0.25 -8.06 7.11 99.48 0.71 -7.35 16 22 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.06 2.51 7.00 -2.38 -0.02 2.49 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 2.80 7.47 -2.39 -0.02 2.78 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.10 2.40 8.13 -2.39 -0.02 2.38 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.06 2.67 7.97 -2.38 -0.02 2.65 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.31 13.08 8.30 -92.71 -0.77 12.31 16 Total: -1.00 -62.45 303.16 -1.28 -63.73 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.06 Total: 18.48 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 6.15 Total: -14.22 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -9.41 Total: -107.88 kcal Atomic # 14 Polarization: 34.17 SS G_CDS: 2.03 Total: 36.20 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.11 Total: 3.69 kcal Total: -62.45 -1.28 -63.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082422220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.819 kcal (2) G-P(sol) polarization free energy of solvation -62.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds