Wall clock time and date at job start Mon Mar 30 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46996 * 2 1 4 4 C 1.46506 * 119.99719 * 95.11911 * 3 2 1 5 5 C 1.50697 * 109.46907 * 269.99763 * 4 3 2 6 6 H 1.08003 * 120.00130 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00091 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00427 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99841 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47122 * 89.99918 * 9 7 5 11 11 H 1.48504 * 109.47249 * 210.00501 * 9 7 5 12 12 H 1.48503 * 109.46846 * 330.00057 * 9 7 5 13 13 C 1.34774 * 119.99970 * 275.11633 * 3 2 1 14 14 O 1.21536 * 119.99923 * 174.50201 * 13 3 2 15 15 C 1.47993 * 120.00107 * 354.50333 * 13 3 2 16 16 C 1.40148 * 120.90016 * 305.11377 * 15 13 3 17 17 C 1.37806 * 119.20261 * 179.75244 * 16 15 13 18 18 N 1.32006 * 121.07335 * 0.53190 * 17 16 15 19 19 C 1.32193 * 121.99096 * 359.71646 * 18 17 16 20 20 N 1.39140 * 119.66469 * 179.97438 * 19 18 17 21 21 C 1.39468 * 120.67504 * 0.02630 * 19 18 17 22 22 F 1.35100 * 120.56843 * 179.97438 * 21 19 18 23 23 H 1.09006 * 109.47369 * 60.00168 * 1 2 3 24 24 H 1.09006 * 109.47388 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47524 * 299.99887 * 1 2 3 26 26 H 1.08995 * 109.47411 * 239.99574 * 2 1 3 27 27 H 1.09002 * 109.46922 * 119.99655 * 2 1 3 28 28 H 1.08994 * 109.47351 * 29.99863 * 4 3 2 29 29 H 1.09004 * 109.46657 * 149.99948 * 4 3 2 30 30 H 0.97000 * 120.00335 * 179.97438 * 8 7 5 31 31 H 1.08006 * 120.39781 * 359.97438 * 16 15 13 32 32 H 1.07999 * 119.46827 * 180.24930 * 17 16 15 33 33 H 0.97002 * 120.00168 * 180.02562 * 20 19 18 34 34 H 0.96999 * 119.99977 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3692 2.0341 1.2638 5 6 1.1553 2.7296 1.8238 6 1 0.2162 2.6891 1.2918 7 6 1.2434 3.4178 3.0153 8 7 0.1842 4.0252 3.5038 9 14 2.8674 3.4873 3.9357 10 1 3.6433 4.6693 3.4820 11 1 2.6059 3.5965 5.3935 12 1 3.6440 2.2512 3.6635 13 6 2.1448 2.0513 -1.1625 14 8 2.4535 3.2267 -1.1559 15 6 1.9076 1.3557 -2.4471 16 6 2.6040 0.1831 -2.7699 17 6 2.3519 -0.4388 -3.9735 18 7 1.4757 0.0579 -4.8268 19 6 0.7978 1.1634 -4.5705 20 7 -0.1139 1.6445 -5.5051 21 6 0.9878 1.8532 -3.3733 22 9 0.2942 2.9831 -3.1138 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.7192 1.2855 1.9745 29 1 3.1582 2.7653 1.0880 30 1 0.2461 4.5091 4.3422 31 1 3.3269 -0.2302 -2.0820 32 1 2.8832 -1.3449 -4.2249 33 1 -0.6137 2.4554 -5.3222 34 1 -0.2497 1.1689 -6.3395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097872500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:29 Heat of formation + Delta-G solvation = -58.390981 kcal Electronic energy + Delta-G solvation = -20609.962872 eV Core-core repulsion = 17263.726521 eV Total energy + Delta-G solvation = -3346.236351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.01965 -41.59930 -40.28268 -37.17354 -35.89612 -34.82398 -33.35730 -31.83309 -30.28032 -29.76216 -26.26550 -24.49753 -24.04127 -23.81898 -20.78642 -19.30468 -19.07108 -18.62960 -18.37727 -17.63577 -17.08118 -16.88343 -16.53929 -16.24276 -15.57475 -15.50257 -15.04300 -14.79624 -14.64548 -14.47307 -14.37870 -14.01808 -13.61753 -13.21813 -13.09079 -12.73697 -12.48883 -12.14581 -12.00594 -11.83293 -11.64921 -11.33344 -10.82751 -10.78771 -10.54938 -9.56580 -8.89917 -8.32666 -6.38149 -0.32028 0.08343 1.32976 1.38196 1.45874 1.51305 2.07925 2.31812 2.36191 2.64078 3.00251 3.01253 3.25405 3.66896 3.73585 4.10048 4.19000 4.36015 4.47838 4.55599 4.68346 4.75469 4.85198 4.85988 4.93136 4.93958 5.37425 5.42991 5.43950 5.57290 6.05821 6.22110 6.41059 6.48455 6.63580 7.03442 7.09142 7.27031 8.84578 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029545 B = 0.005711 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.494397 B = 4901.898878 C = 5146.967910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.583 5.583 4 C 0.222 3.778 5 C -0.533 4.533 6 H 0.025 0.975 7 C 0.008 3.992 8 N -0.948 5.948 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.230 1.230 13 C 0.543 3.457 14 O -0.579 6.579 15 C -0.072 4.072 16 C -0.178 4.178 17 C 0.161 3.839 18 N -0.519 5.519 19 C 0.390 3.610 20 N -0.832 5.832 21 C -0.021 4.021 22 F -0.146 7.146 23 H 0.028 0.972 24 H 0.098 0.902 25 H 0.033 0.967 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.021 0.979 30 H 0.268 0.732 31 H 0.177 0.823 32 H 0.221 0.779 33 H 0.416 0.584 34 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -15.310 -15.745 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.313 5.313 4 C 0.100 3.900 5 C -0.571 4.571 6 H 0.043 0.957 7 C -0.190 4.190 8 N -0.589 5.589 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.152 1.152 13 C 0.331 3.669 14 O -0.459 6.459 15 C -0.084 4.084 16 C -0.201 4.201 17 C 0.005 3.995 18 N -0.237 5.237 19 C 0.150 3.850 20 N -0.378 5.378 21 C -0.049 4.049 22 F -0.125 7.125 23 H 0.047 0.953 24 H 0.116 0.884 25 H 0.052 0.948 26 H 0.133 0.867 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.194 0.806 32 H 0.237 0.763 33 H 0.247 0.753 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.778 -15.007 -16.323 22.682 hybrid contribution -0.433 1.963 1.429 2.466 sum 4.345 -13.043 -14.894 20.269 Atomic orbital electron populations 1.22126 0.96768 1.02766 1.00383 1.22090 0.94318 0.80631 1.05558 1.47972 1.62464 1.15230 1.05607 1.19514 0.94829 0.93792 0.81839 1.21528 0.96346 1.32963 1.06298 0.95693 1.25909 1.00799 0.94028 0.98224 1.70065 1.31921 1.35441 1.21432 0.85693 0.79050 0.80471 0.77595 1.20424 1.20123 1.15230 1.18604 0.77765 0.85831 0.84740 1.90761 1.50002 1.17331 1.87847 1.20335 0.97321 0.97360 0.93406 1.22227 1.03023 0.93704 1.01124 1.23208 0.90686 0.98689 0.86951 1.67316 1.10980 1.10666 1.34750 1.18285 0.90725 0.89787 0.86232 1.42137 1.43578 1.31605 1.20441 1.18349 1.00734 0.88461 0.97348 1.91462 1.77719 1.49003 1.94357 0.95263 0.88375 0.94773 0.86736 0.87948 0.91779 0.96073 0.92345 0.80586 0.76276 0.75268 0.74609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 10.20 71.98 0.73 -4.49 16 2 C 0.10 2.79 5.95 86.38 0.51 3.31 16 3 N -0.58 -24.09 2.47 -829.41 -2.05 -26.14 16 4 C 0.22 10.77 4.23 85.63 0.36 11.13 16 5 C -0.53 -31.88 9.74 25.60 0.25 -31.63 16 6 H 0.02 1.70 7.66 -2.91 -0.02 1.67 16 7 C 0.01 0.47 5.47 84.65 0.46 0.94 16 8 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 9 Si 0.95 44.36 27.47 68.60 1.88 46.25 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.23 -9.31 6.54 99.48 0.65 -8.66 16 13 C 0.54 23.85 6.90 86.83 0.60 24.45 16 14 O -0.58 -31.76 16.60 -3.83 -0.06 -31.82 16 15 C -0.07 -2.40 4.89 -19.88 -0.10 -2.49 16 16 C -0.18 -3.73 7.73 22.63 0.17 -3.55 16 17 C 0.16 2.58 11.16 84.56 0.94 3.52 16 18 N -0.52 -10.94 10.36 -193.17 -2.00 -12.94 16 19 C 0.39 9.88 7.76 133.16 1.03 10.92 16 20 N -0.83 -15.62 9.08 -55.25 -0.50 -16.12 16 21 C -0.02 -0.71 7.33 22.92 0.17 -0.55 16 22 F -0.15 -5.87 16.18 44.97 0.73 -5.14 16 23 H 0.03 1.01 8.05 -2.38 -0.02 0.99 16 24 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.03 1.38 7.54 -2.39 -0.02 1.36 16 26 H 0.11 2.40 4.55 -2.39 -0.01 2.39 16 27 H 0.10 2.58 7.83 -2.39 -0.02 2.56 16 28 H 0.06 2.73 6.92 -2.39 -0.02 2.71 16 29 H 0.02 1.10 6.93 -2.38 -0.02 1.08 16 30 H 0.27 16.02 8.31 -92.71 -0.77 15.24 16 31 H 0.18 2.62 7.38 -2.91 -0.02 2.60 16 32 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.42 7.44 8.30 -92.71 -0.77 6.67 16 34 H 0.42 5.58 8.95 -92.71 -0.83 4.75 16 Total: -1.00 -85.48 296.86 2.95 -82.53 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -0.49 Total: 12.70 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 5.14 Total: 11.56 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -4.25 Total: -116.06 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.06 Total: -31.82 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.73 Total: -5.14 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -85.48 2.95 -82.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097872500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.135 kcal (2) G-P(sol) polarization free energy of solvation -85.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds