Wall clock time and date at job start Mon Mar 30 2020 05:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33324 * 122.71205 * 2 1 4 4 S 1.76168 * 108.09657 * 179.97438 * 3 2 1 5 5 C 1.70969 * 90.35460 * 0.02562 * 4 3 2 6 6 N 1.38615 * 124.94543 * 180.26869 * 5 4 3 7 7 C 1.46497 * 120.00364 * 359.68724 * 6 5 4 8 8 C 1.53042 * 109.46145 * 275.03330 * 7 6 5 9 9 C 1.53190 * 109.30974 * 178.59962 * 8 7 6 10 10 N 1.46926 * 108.76947 * 54.65574 * 9 8 7 11 11 C 1.36938 * 120.63323 * 126.35627 * 10 9 8 12 12 H 1.08002 * 119.99653 * 331.86606 * 11 10 9 13 13 C 1.38810 * 119.99828 * 151.85729 * 11 10 9 14 14 N 1.31614 * 120.00351 * 343.07977 * 13 11 10 15 15 Si 1.86804 * 119.99664 * 163.07365 * 13 11 10 16 16 H 1.48500 * 109.47122 * 60.00394 * 15 13 11 17 17 H 1.48502 * 109.47190 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47268 * 300.00587 * 15 13 11 19 19 C 1.46921 * 118.73476 * 306.38470 * 10 9 8 20 20 C 1.53038 * 109.46339 * 154.97609 * 7 6 5 21 21 N 1.29683 * 110.10196 * 359.97438 * 5 4 3 22 22 H 1.09001 * 109.47393 * 270.00180 * 1 2 3 23 23 H 1.09007 * 109.46879 * 29.99850 * 1 2 3 24 24 H 1.09003 * 109.47491 * 149.99804 * 1 2 3 25 25 H 1.08000 * 125.95046 * 0.02562 * 3 2 1 26 26 H 0.97001 * 119.99967 * 179.69397 * 6 5 4 27 27 H 1.09004 * 109.46034 * 35.00495 * 7 6 5 28 28 H 1.08997 * 109.49610 * 298.56581 * 8 7 6 29 29 H 1.09003 * 109.49725 * 58.66175 * 8 7 6 30 30 H 1.08997 * 109.60161 * 294.86236 * 9 8 7 31 31 H 1.09013 * 109.70242 * 174.50675 * 9 8 7 32 32 H 0.97002 * 120.00213 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.58998 * 293.81540 * 19 10 9 34 34 H 1.09002 * 109.70524 * 173.46462 * 19 10 9 35 35 H 1.09009 * 109.49544 * 301.34423 * 20 7 6 36 36 H 1.09009 * 109.49376 * 61.39894 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2275 1.1218 0.0000 4 16 3.9322 0.6773 0.0007 5 6 3.5110 -0.9797 0.0002 6 7 4.4166 -2.0292 0.0058 7 6 5.8557 -1.7549 0.0059 8 6 6.3341 -1.5416 -1.4321 9 6 7.8320 -1.2206 -1.4252 10 7 8.5409 -2.2877 -0.7057 11 6 9.5904 -2.9452 -1.2899 12 1 9.6368 -3.0407 -2.3647 13 6 10.5947 -3.4888 -0.5008 14 7 10.7298 -3.1033 0.7504 15 14 11.7543 -4.7676 -1.2146 16 1 12.4821 -4.1854 -2.3707 17 1 12.7291 -5.1867 -0.1756 18 1 10.9733 -5.9476 -1.6647 19 6 8.1017 -2.6363 0.6523 20 6 6.6008 -2.9410 0.6223 21 7 2.2209 -1.1117 0.0001 22 1 -0.3634 0.0000 1.0277 23 1 -0.3633 0.8901 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 1.8345 2.1278 0.0004 26 1 4.0975 -2.9452 0.0096 27 1 6.0543 -0.8573 0.5915 28 1 6.1586 -2.4476 -2.0121 29 1 5.7864 -0.7116 -1.8784 30 1 7.9995 -0.2678 -0.9232 31 1 8.2004 -1.1636 -2.4496 32 1 11.4314 -3.4834 1.3020 33 1 8.2911 -1.7989 1.3239 34 1 8.6459 -3.5142 1.0006 35 1 6.2428 -3.1073 1.6384 36 1 6.4222 -3.8340 0.0230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104359708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:17 Heat of formation + Delta-G solvation = 62.092190 kcal Electronic energy + Delta-G solvation = -18061.024339 eV Core-core repulsion = 15286.225707 eV Total energy + Delta-G solvation = -2774.798633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.64054 -38.16813 -35.27547 -32.59475 -31.10257 -30.09930 -29.16356 -27.37852 -25.12389 -23.41476 -22.31564 -21.86828 -20.10076 -18.97479 -17.86546 -16.91949 -16.18477 -15.26358 -15.00182 -14.73205 -13.98729 -13.97161 -13.68686 -13.34295 -13.13039 -12.84722 -12.66327 -12.55771 -12.38923 -11.59600 -11.21864 -11.17865 -10.90033 -10.76918 -10.71237 -10.43378 -10.22339 -9.95844 -9.72843 -9.60433 -9.45540 -8.98314 -8.54144 -7.52743 -6.77583 -5.86441 -3.29256 1.17302 1.36076 1.99726 3.05228 3.16898 3.35246 3.41063 3.42200 4.44087 4.69467 5.10732 5.23651 5.27923 5.35729 5.41035 5.43073 5.52745 5.60524 5.71332 5.86858 5.92076 6.13709 6.19950 6.32242 6.36630 6.40610 6.48590 6.66889 6.85209 6.94364 7.21109 7.48560 7.56560 7.73395 8.11354 8.37191 9.13266 9.76028 10.32147 11.22602 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.054441 B = 0.004004 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.190416 B = 6991.872253 C = 7095.476689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.113 3.887 3 C -0.324 4.324 4 S 0.095 5.905 5 C 0.332 3.668 6 N -0.685 5.685 7 C 0.155 3.845 8 C -0.147 4.147 9 C 0.148 3.852 10 N -0.592 5.592 11 C -0.256 4.256 12 H 0.066 0.934 13 C 0.004 3.996 14 N -0.903 5.903 15 Si 0.904 3.096 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.175 3.825 20 C -0.145 4.145 21 N -0.567 5.567 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.168 0.832 26 H 0.408 0.592 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.255 0.745 33 H 0.022 0.978 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.267 6.105 -0.358 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.019 4.019 3 C -0.465 4.465 4 S 0.342 5.658 5 C -0.040 4.040 6 N -0.323 5.323 7 C 0.051 3.949 8 C -0.188 4.188 9 C 0.021 3.979 10 N -0.314 5.314 11 C -0.386 4.386 12 H 0.084 0.916 13 C -0.195 4.195 14 N -0.547 5.547 15 Si 0.733 3.267 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.048 3.952 20 C -0.185 4.185 21 N -0.294 5.294 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.185 0.815 26 H 0.245 0.755 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.158 6.111 -0.232 15.422 hybrid contribution -0.422 -1.007 -0.288 1.129 sum -14.580 5.104 -0.520 15.456 Atomic orbital electron populations 1.20326 0.87786 1.02915 1.02587 1.19820 0.97349 0.86270 0.98459 1.26146 0.94234 1.03217 1.22944 1.84104 1.07806 0.99722 1.74153 1.23636 0.90263 0.93512 0.96588 1.44644 1.04007 1.05400 1.78240 1.21282 0.76048 0.99989 0.97578 1.22541 0.99339 1.01444 0.95438 1.20877 0.88860 0.91281 0.96924 1.44074 1.35093 1.37981 1.14266 1.19146 0.98565 1.29227 0.91657 0.91603 1.25053 0.96951 1.00838 0.96608 1.70002 1.33905 1.43184 1.07585 0.86354 0.80358 0.81860 0.78098 1.20818 1.21588 1.20992 1.20761 0.87291 1.00807 0.86354 1.22543 1.00231 0.96424 0.99311 1.66302 1.02470 1.31533 1.29117 0.90905 0.90964 0.90903 0.81465 0.75476 0.90655 0.91617 0.92745 0.96111 0.92224 0.93452 0.95943 0.88778 0.92352 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.30 36.00 0.37 -0.37 16 2 C 0.11 1.52 6.74 -84.18 -0.57 0.95 16 3 C -0.32 -4.06 11.10 29.02 0.32 -3.74 16 4 S 0.09 1.31 21.71 -107.50 -2.33 -1.03 16 5 C 0.33 5.12 8.22 -87.68 -0.72 4.40 16 6 N -0.69 -10.26 5.23 -55.74 -0.29 -10.55 16 7 C 0.15 2.51 2.37 -67.89 -0.16 2.35 16 8 C -0.15 -2.48 5.66 -26.61 -0.15 -2.64 16 9 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 10 N -0.59 -14.15 2.99 -172.33 -0.52 -14.67 16 11 C -0.26 -6.81 9.58 -15.06 -0.14 -6.95 16 12 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 13 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 14 N -0.90 -25.36 11.19 55.49 0.62 -24.74 16 15 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.17 3.92 5.30 -3.72 -0.02 3.90 16 20 C -0.15 -2.57 5.55 -26.62 -0.15 -2.71 16 21 N -0.57 -8.92 10.59 -11.36 -0.12 -9.04 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 26 H 0.41 5.74 8.73 -40.82 -0.36 5.39 16 27 H 0.08 1.26 7.25 -51.93 -0.38 0.88 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.18 7.93 -51.92 -0.41 0.77 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 35 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 LS Contribution 306.29 15.07 4.62 4.62 Total: -1.00 -28.92 306.29 -9.61 -38.54 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.23 Total: 2.60 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.33 Total: -1.85 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.31 Total: -59.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.33 Total: -1.03 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.92 -9.61 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104359708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.628 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds