Wall clock time and date at job start Mon Mar 30 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33324 * 122.71205 * 2 1 4 4 S 1.76168 * 108.09657 * 179.97438 * 3 2 1 5 5 C 1.70969 * 90.35460 * 0.02562 * 4 3 2 6 6 N 1.38615 * 124.94543 * 180.26869 * 5 4 3 7 7 C 1.46497 * 120.00364 * 359.68724 * 6 5 4 8 8 C 1.53042 * 109.46145 * 275.03330 * 7 6 5 9 9 C 1.53190 * 109.30974 * 178.59962 * 8 7 6 10 10 N 1.46926 * 108.76947 * 54.65574 * 9 8 7 11 11 C 1.36938 * 120.63323 * 126.35627 * 10 9 8 12 12 H 1.08002 * 119.99653 * 331.86606 * 11 10 9 13 13 C 1.38810 * 119.99828 * 151.85729 * 11 10 9 14 14 N 1.31614 * 120.00351 * 343.07977 * 13 11 10 15 15 Si 1.86804 * 119.99664 * 163.07365 * 13 11 10 16 16 H 1.48500 * 109.47122 * 60.00394 * 15 13 11 17 17 H 1.48502 * 109.47190 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47268 * 300.00587 * 15 13 11 19 19 C 1.46921 * 118.73476 * 306.38470 * 10 9 8 20 20 C 1.53038 * 109.46339 * 154.97609 * 7 6 5 21 21 N 1.29683 * 110.10196 * 359.97438 * 5 4 3 22 22 H 1.09001 * 109.47393 * 270.00180 * 1 2 3 23 23 H 1.09007 * 109.46879 * 29.99850 * 1 2 3 24 24 H 1.09003 * 109.47491 * 149.99804 * 1 2 3 25 25 H 1.08000 * 125.95046 * 0.02562 * 3 2 1 26 26 H 0.97001 * 119.99967 * 179.69397 * 6 5 4 27 27 H 1.09004 * 109.46034 * 35.00495 * 7 6 5 28 28 H 1.08997 * 109.49610 * 298.56581 * 8 7 6 29 29 H 1.09003 * 109.49725 * 58.66175 * 8 7 6 30 30 H 1.08997 * 109.60161 * 294.86236 * 9 8 7 31 31 H 1.09013 * 109.70242 * 174.50675 * 9 8 7 32 32 H 0.97002 * 120.00213 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.58998 * 293.81540 * 19 10 9 34 34 H 1.09002 * 109.70524 * 173.46462 * 19 10 9 35 35 H 1.09009 * 109.49544 * 301.34423 * 20 7 6 36 36 H 1.09009 * 109.49376 * 61.39894 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2275 1.1218 0.0000 4 16 3.9322 0.6773 0.0007 5 6 3.5110 -0.9797 0.0002 6 7 4.4166 -2.0292 0.0058 7 6 5.8557 -1.7549 0.0059 8 6 6.3341 -1.5416 -1.4321 9 6 7.8320 -1.2206 -1.4252 10 7 8.5409 -2.2877 -0.7057 11 6 9.5904 -2.9452 -1.2899 12 1 9.6368 -3.0407 -2.3647 13 6 10.5947 -3.4888 -0.5008 14 7 10.7298 -3.1033 0.7504 15 14 11.7543 -4.7676 -1.2146 16 1 12.4821 -4.1854 -2.3707 17 1 12.7291 -5.1867 -0.1756 18 1 10.9733 -5.9476 -1.6647 19 6 8.1017 -2.6363 0.6523 20 6 6.6008 -2.9410 0.6223 21 7 2.2209 -1.1117 0.0001 22 1 -0.3634 0.0000 1.0277 23 1 -0.3633 0.8901 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 1.8345 2.1278 0.0004 26 1 4.0975 -2.9452 0.0096 27 1 6.0543 -0.8573 0.5915 28 1 6.1586 -2.4476 -2.0121 29 1 5.7864 -0.7116 -1.8784 30 1 7.9995 -0.2678 -0.9232 31 1 8.2004 -1.1636 -2.4496 32 1 11.4314 -3.4834 1.3020 33 1 8.2911 -1.7989 1.3239 34 1 8.6459 -3.5142 1.0006 35 1 6.2428 -3.1073 1.6384 36 1 6.4222 -3.8340 0.0230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104359708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:16 Heat of formation + Delta-G solvation = 45.139497 kcal Electronic energy + Delta-G solvation = -18061.759463 eV Core-core repulsion = 15286.225707 eV Total energy + Delta-G solvation = -2775.533757 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73767 -39.62319 -36.77465 -34.24423 -32.49090 -31.63240 -30.64042 -28.30469 -26.89520 -24.71710 -23.87706 -23.34867 -21.46320 -20.33163 -18.96936 -18.72803 -17.31844 -16.93216 -16.39561 -16.05008 -15.55674 -15.37463 -14.93597 -14.83958 -14.65091 -14.18026 -13.90627 -13.59893 -13.28996 -13.19450 -12.99827 -12.64732 -12.58061 -12.30653 -12.09325 -12.02216 -11.89471 -11.68732 -11.40015 -10.92376 -10.56549 -10.53974 -10.07756 -8.71906 -8.62881 -7.88975 -5.33951 0.11291 0.28271 0.97153 1.48569 1.50569 1.57165 1.98798 2.00045 2.51518 3.27633 3.61014 3.69953 3.81629 3.93231 4.19274 4.40393 4.43130 4.54930 4.61279 4.75673 4.79523 4.84516 4.88149 4.97178 4.99068 5.00791 5.10609 5.28221 5.44594 5.44959 5.63605 5.67633 5.73869 6.38272 6.40276 7.03690 7.14043 7.83751 8.35132 9.17927 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.054441 B = 0.004004 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.190416 B = 6991.872253 C = 7095.476689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.090 3.910 3 C -0.312 4.312 4 S 0.093 5.907 5 C 0.312 3.688 6 N -0.684 5.684 7 C 0.169 3.831 8 C -0.132 4.132 9 C 0.145 3.855 10 N -0.609 5.609 11 C -0.266 4.266 12 H 0.067 0.933 13 C -0.046 4.046 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.276 1.276 17 H -0.294 1.294 18 H -0.279 1.279 19 C 0.180 3.820 20 C -0.130 4.130 21 N -0.585 5.585 22 H 0.083 0.917 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.197 0.803 26 H 0.412 0.588 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.251 0.749 33 H 0.004 0.996 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.064 6.785 -0.983 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.041 4.041 3 C -0.453 4.453 4 S 0.340 5.660 5 C -0.059 4.059 6 N -0.322 5.322 7 C 0.065 3.935 8 C -0.173 4.173 9 C 0.019 3.981 10 N -0.333 5.333 11 C -0.396 4.396 12 H 0.084 0.916 13 C -0.242 4.242 14 N -0.578 5.578 15 Si 0.794 3.206 16 H -0.202 1.202 17 H -0.221 1.221 18 H -0.205 1.205 19 C 0.054 3.946 20 C -0.170 4.170 21 N -0.312 5.312 22 H 0.102 0.898 23 H 0.115 0.885 24 H 0.087 0.913 25 H 0.214 0.786 26 H 0.250 0.750 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.006 6.809 -0.874 17.416 hybrid contribution 0.060 -1.107 -0.102 1.114 sum -15.946 5.702 -0.976 16.963 Atomic orbital electron populations 1.20429 0.85282 1.03963 1.03602 1.20417 0.99049 0.85882 0.98715 1.26542 0.93112 1.04433 1.21196 1.84108 1.09207 0.98863 1.73840 1.23767 0.90445 0.94036 0.97656 1.44322 1.03210 1.05703 1.78999 1.20943 0.76816 0.98978 0.96783 1.22344 0.97038 1.01824 0.96083 1.20990 0.90482 0.90253 0.96379 1.44321 1.35098 1.39111 1.14763 1.19466 0.99120 1.29134 0.91916 0.91564 1.25757 0.98675 1.02720 0.97025 1.70148 1.34585 1.44382 1.08714 0.85377 0.78393 0.79612 0.77261 1.20214 1.22053 1.20487 1.20543 0.89966 0.98606 0.85490 1.22268 0.96987 0.97061 1.00668 1.66326 1.02786 1.33056 1.29080 0.89828 0.88516 0.91286 0.78553 0.75037 0.90872 0.92052 0.91024 0.96098 0.92232 0.93991 0.97786 0.91998 0.90602 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.30 71.24 0.73 -0.47 16 2 C 0.09 2.20 6.74 41.40 0.28 2.47 16 3 C -0.31 -6.91 11.10 66.71 0.74 -6.17 16 4 S 0.09 2.37 21.71 -56.49 -1.23 1.15 16 5 C 0.31 9.12 8.22 179.32 1.47 10.59 16 6 N -0.68 -19.49 5.23 -330.27 -1.73 -21.21 16 7 C 0.17 5.30 2.37 45.02 0.11 5.40 16 8 C -0.13 -4.31 5.66 30.67 0.17 -4.13 16 9 C 0.15 5.75 6.52 86.36 0.56 6.32 16 10 N -0.61 -29.44 2.99 -699.12 -2.09 -31.53 16 11 C -0.27 -14.26 9.58 84.03 0.81 -13.46 16 12 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 13 C -0.05 -2.51 4.92 84.86 0.42 -2.09 16 14 N -0.93 -53.68 11.19 21.65 0.24 -53.44 16 15 Si 0.97 43.91 29.59 68.60 2.03 45.94 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 C 0.18 8.25 5.30 86.36 0.46 8.71 16 20 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 21 N -0.58 -17.37 10.59 -189.86 -2.01 -19.38 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.10 1.09 8.12 -2.38 -0.02 1.07 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 26 H 0.41 11.03 8.73 -92.71 -0.81 10.23 16 27 H 0.07 2.36 7.25 -2.39 -0.02 2.34 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 2.32 7.93 -2.38 -0.02 2.31 16 32 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.06 3.23 6.06 -2.39 -0.01 3.22 16 35 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -61.98 306.29 1.41 -60.58 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.27 Total: 15.07 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 5.92 Total: 2.82 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -5.59 Total: -125.56 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.23 Total: 1.15 kcal Total: -61.98 1.41 -60.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104359708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.719 kcal (2) G-P(sol) polarization free energy of solvation -61.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds