Wall clock time and date at job start Mon Mar 30 2020 06:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99898 * 2 1 4 4 H 1.07996 * 119.99667 * 200.37502 * 3 2 1 5 5 C 1.38811 * 119.99878 * 20.37643 * 3 2 1 6 6 N 1.31613 * 120.00620 * 14.97670 * 5 3 2 7 7 Si 1.86803 * 119.99634 * 194.98115 * 5 3 2 8 8 H 1.48494 * 109.47584 * 85.00313 * 7 5 3 9 9 H 1.48506 * 109.46974 * 205.00509 * 7 5 3 10 10 H 1.48507 * 109.47102 * 324.99649 * 7 5 3 11 11 C 1.46496 * 119.99837 * 180.02562 * 2 1 3 12 12 C 1.50710 * 109.46852 * 269.99655 * 11 2 1 13 13 C 1.33319 * 122.70732 * 94.97689 * 12 11 2 14 14 S 1.76166 * 108.09416 * 179.78934 * 13 12 11 15 15 C 1.70966 * 90.35665 * 0.30324 * 14 13 12 16 16 N 1.38611 * 124.95110 * 179.97438 * 15 14 13 17 17 C 1.46498 * 120.00148 * 179.69492 * 16 15 14 18 18 C 1.46495 * 120.00031 * 359.69452 * 16 15 14 19 19 C 1.52997 * 117.51820 * 171.28943 * 18 16 15 20 20 C 1.53001 * 60.00118 * 107.48007 * 19 18 16 21 21 N 1.29688 * 110.09622 * 359.69284 * 15 14 13 22 22 H 1.09000 * 109.47190 * 275.09602 * 1 2 3 23 23 H 1.08997 * 109.47452 * 35.09384 * 1 2 3 24 24 H 1.08998 * 109.47231 * 155.09386 * 1 2 3 25 25 H 0.96995 * 120.00626 * 179.97438 * 6 5 3 26 26 H 1.08994 * 109.47510 * 150.00042 * 11 2 1 27 27 H 1.09004 * 109.47507 * 29.99266 * 11 2 1 28 28 H 1.08003 * 125.95945 * 0.02562 * 13 12 11 29 29 H 1.08997 * 109.47454 * 270.00413 * 17 16 15 30 30 H 1.09008 * 109.46843 * 29.99776 * 17 16 15 31 31 H 1.08994 * 109.47379 * 149.99666 * 17 16 15 32 32 H 1.09006 * 115.55256 * 25.57937 * 18 16 15 33 33 H 1.09004 * 117.49680 * 214.97090 * 19 18 16 34 34 H 1.08995 * 117.50130 * 359.97438 * 19 18 16 35 35 H 1.08995 * 117.49651 * 252.50721 * 20 19 18 36 36 H 1.09000 * 117.49872 * 107.49196 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1789 1.2151 -0.3256 5 6 1.5207 2.3504 0.4186 6 7 0.3876 2.2835 1.0848 7 14 2.2825 4.0126 0.0361 8 1 1.8682 4.4463 -1.3224 9 1 1.8225 5.0097 1.0358 10 1 3.7625 3.9032 0.0910 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4202 13 6 1.6468 -2.5507 2.0666 14 16 2.2995 -2.7953 3.6845 15 6 3.5874 -1.7255 3.3382 16 7 4.6009 -1.3904 4.2224 17 6 5.6578 -0.4643 3.8082 18 6 4.6152 -1.9623 5.5710 19 6 5.8589 -1.7198 6.4285 20 6 4.5532 -0.9905 6.7511 21 7 3.4810 -1.2779 2.1257 22 1 -0.3633 0.0913 1.0236 23 1 -0.3634 0.8408 -0.5908 24 1 -0.3633 -0.9321 -0.4328 25 1 -0.0517 3.0972 1.3776 26 1 3.1498 -1.1383 -0.5143 27 1 1.6083 -2.0282 -0.5146 28 1 0.7546 -3.0098 1.6668 29 1 6.4795 -1.0260 3.3639 30 1 5.2593 0.2374 3.0754 31 1 6.0208 0.0847 4.6770 32 1 4.1071 -2.9204 5.6808 33 1 6.1691 -2.5184 7.1024 34 1 6.6670 -1.1350 5.9891 35 1 4.5022 0.0743 6.5241 36 1 4.0044 -1.3093 7.6373 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136924828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:17 Heat of formation + Delta-G solvation = 116.237061 kcal Electronic energy + Delta-G solvation = -18257.600588 eV Core-core repulsion = 15485.149853 eV Total energy + Delta-G solvation = -2772.450735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.31256 -38.12905 -35.36917 -33.76940 -31.27336 -29.09474 -27.16716 -26.41745 -25.52384 -23.34203 -22.53107 -21.38459 -20.36800 -18.87992 -17.86797 -16.64423 -16.02894 -15.41556 -15.05555 -14.82017 -14.31445 -13.69182 -13.52253 -13.16082 -12.89556 -12.64782 -12.38339 -12.06843 -11.74815 -11.52304 -11.39548 -11.20294 -10.82094 -10.79428 -10.62003 -10.46520 -10.31802 -9.94219 -9.79692 -9.29309 -8.86187 -8.48292 -8.46880 -7.07514 -6.74915 -5.66257 -3.07528 1.65018 1.77812 2.44853 2.99647 3.42924 3.48313 3.50141 3.60141 3.83057 4.58143 4.58787 4.70874 4.79168 5.15399 5.29040 5.43179 5.52855 5.62128 5.69644 5.76859 5.78719 5.92857 6.02014 6.10114 6.23300 6.48835 6.64036 6.79184 6.88309 7.08737 7.40244 7.43256 7.77612 7.90595 8.43479 8.72917 9.29279 9.90987 10.38598 11.39089 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.006428 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.492012 B = 4354.816973 C = 5246.820629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.584 5.584 3 C -0.239 4.239 4 H 0.072 0.928 5 C -0.001 4.001 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.212 3.788 12 C 0.118 3.882 13 C -0.302 4.302 14 S 0.034 5.966 15 C 0.317 3.683 16 N -0.563 5.563 17 C 0.103 3.897 18 C 0.090 3.910 19 C -0.182 4.182 20 C -0.195 4.195 21 N -0.515 5.515 22 H 0.029 0.971 23 H 0.046 0.954 24 H 0.000 1.000 25 H 0.251 0.749 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.163 0.837 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.533 -10.420 8.833 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.304 5.304 3 C -0.369 4.369 4 H 0.090 0.910 5 C -0.199 4.199 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.081 3.919 12 C -0.015 4.015 13 C -0.443 4.443 14 S 0.281 5.719 15 C -0.053 4.053 16 N -0.282 5.282 17 C -0.041 4.041 18 C -0.016 4.016 19 C -0.220 4.220 20 C -0.235 4.235 21 N -0.238 5.238 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.018 0.982 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.181 0.819 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.598 -10.433 9.566 16.065 hybrid contribution 0.098 1.403 -0.569 1.517 sum 7.696 -9.030 8.997 14.890 Atomic orbital electron populations 1.20841 0.82200 0.95648 0.99565 1.44212 1.02006 1.00421 1.83787 1.19249 0.97066 0.84323 1.36215 0.90999 1.24994 0.97962 0.98407 0.98533 1.70092 1.18886 1.26662 1.39640 0.86260 0.78716 0.84023 0.77514 1.21450 1.21933 1.20547 1.19697 0.96770 0.88517 0.86883 1.21500 0.88056 0.90959 1.01031 1.26088 1.09313 1.13679 0.95221 1.83316 1.22451 1.47330 1.18757 1.23415 0.93064 0.97230 0.91571 1.44964 1.24622 1.49029 1.09596 1.21609 0.89421 0.92692 1.00391 1.21514 1.03124 0.97625 0.79322 1.23384 0.92166 1.03867 1.02569 1.23497 1.00413 0.99561 1.00019 1.66219 1.25845 1.28298 1.03487 0.95286 0.93501 0.98164 0.93890 0.92044 0.92375 0.81937 0.93304 0.89661 0.91886 0.85766 0.87806 0.87981 0.88221 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.10 9.02 59.85 0.54 4.64 16 2 N -0.58 -15.28 2.91 -182.50 -0.53 -15.81 16 3 C -0.24 -6.81 9.68 -15.06 -0.15 -6.95 16 4 H 0.07 2.04 7.86 -52.49 -0.41 1.63 16 5 C 0.00 -0.03 5.06 -17.43 -0.09 -0.12 16 6 N -0.91 -27.42 10.67 55.49 0.59 -26.83 16 7 Si 0.90 22.68 29.58 -169.99 -5.03 17.66 16 8 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 9 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 C 0.21 4.68 6.14 -5.19 -0.03 4.65 16 12 C 0.12 2.58 6.32 -84.18 -0.53 2.05 16 13 C -0.30 -5.85 11.08 29.01 0.32 -5.53 16 14 S 0.03 0.58 21.81 -107.50 -2.34 -1.77 16 15 C 0.32 6.07 7.74 -87.68 -0.68 5.39 16 16 N -0.56 -8.90 3.32 -176.27 -0.58 -9.49 16 17 C 0.10 1.49 9.80 59.85 0.59 2.08 16 18 C 0.09 1.09 6.20 -67.93 -0.42 0.67 16 19 C -0.18 -1.65 9.72 -26.73 -0.26 -1.91 16 20 C -0.20 -2.05 10.12 -26.73 -0.27 -2.32 16 21 N -0.51 -11.44 9.80 -11.36 -0.11 -11.56 16 22 H 0.03 0.81 7.40 -51.93 -0.38 0.42 16 23 H 0.05 1.26 7.21 -51.93 -0.37 0.89 16 24 H 0.00 0.00 7.83 -51.93 -0.41 -0.41 16 25 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.06 1.34 8.03 -51.93 -0.42 0.93 16 27 H 0.06 1.11 7.81 -51.93 -0.41 0.70 16 28 H 0.16 2.81 8.06 -52.48 -0.42 2.39 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.50 7.62 -51.92 -0.40 1.10 16 31 H 0.06 0.74 6.33 -51.93 -0.33 0.41 16 32 H 0.12 1.41 7.30 -51.93 -0.38 1.03 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.90 6.46 -51.93 -0.34 0.57 16 35 H 0.10 1.17 8.12 -51.93 -0.42 0.75 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -32.83 313.06 -9.36 -42.19 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.09 Total: -1.76 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.98 Total: 2.65 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.64 Total: -63.68 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.66 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -2.34 Total: -1.77 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.83 -9.36 -42.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136924828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.423 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds