Wall clock time and date at job start Mon Mar 30 2020 06:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99898 * 2 1 4 4 H 1.07996 * 119.99667 * 200.37502 * 3 2 1 5 5 C 1.38811 * 119.99878 * 20.37643 * 3 2 1 6 6 N 1.31613 * 120.00620 * 14.97670 * 5 3 2 7 7 Si 1.86803 * 119.99634 * 194.98115 * 5 3 2 8 8 H 1.48494 * 109.47584 * 85.00313 * 7 5 3 9 9 H 1.48506 * 109.46974 * 205.00509 * 7 5 3 10 10 H 1.48507 * 109.47102 * 324.99649 * 7 5 3 11 11 C 1.46496 * 119.99837 * 180.02562 * 2 1 3 12 12 C 1.50710 * 109.46852 * 269.99655 * 11 2 1 13 13 C 1.33319 * 122.70732 * 94.97689 * 12 11 2 14 14 S 1.76166 * 108.09416 * 179.78934 * 13 12 11 15 15 C 1.70966 * 90.35665 * 0.30324 * 14 13 12 16 16 N 1.38611 * 124.95110 * 179.97438 * 15 14 13 17 17 C 1.46498 * 120.00148 * 179.69492 * 16 15 14 18 18 C 1.46495 * 120.00031 * 359.69452 * 16 15 14 19 19 C 1.52997 * 117.51820 * 171.28943 * 18 16 15 20 20 C 1.53001 * 60.00118 * 107.48007 * 19 18 16 21 21 N 1.29688 * 110.09622 * 359.69284 * 15 14 13 22 22 H 1.09000 * 109.47190 * 275.09602 * 1 2 3 23 23 H 1.08997 * 109.47452 * 35.09384 * 1 2 3 24 24 H 1.08998 * 109.47231 * 155.09386 * 1 2 3 25 25 H 0.96995 * 120.00626 * 179.97438 * 6 5 3 26 26 H 1.08994 * 109.47510 * 150.00042 * 11 2 1 27 27 H 1.09004 * 109.47507 * 29.99266 * 11 2 1 28 28 H 1.08003 * 125.95945 * 0.02562 * 13 12 11 29 29 H 1.08997 * 109.47454 * 270.00413 * 17 16 15 30 30 H 1.09008 * 109.46843 * 29.99776 * 17 16 15 31 31 H 1.08994 * 109.47379 * 149.99666 * 17 16 15 32 32 H 1.09006 * 115.55256 * 25.57937 * 18 16 15 33 33 H 1.09004 * 117.49680 * 214.97090 * 19 18 16 34 34 H 1.08995 * 117.50130 * 359.97438 * 19 18 16 35 35 H 1.08995 * 117.49651 * 252.50721 * 20 19 18 36 36 H 1.09000 * 117.49872 * 107.49196 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1789 1.2151 -0.3256 5 6 1.5207 2.3504 0.4186 6 7 0.3876 2.2835 1.0848 7 14 2.2825 4.0126 0.0361 8 1 1.8682 4.4463 -1.3224 9 1 1.8225 5.0097 1.0358 10 1 3.7625 3.9032 0.0910 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4202 13 6 1.6468 -2.5507 2.0666 14 16 2.2995 -2.7953 3.6845 15 6 3.5874 -1.7255 3.3382 16 7 4.6009 -1.3904 4.2224 17 6 5.6578 -0.4643 3.8082 18 6 4.6152 -1.9623 5.5710 19 6 5.8589 -1.7198 6.4285 20 6 4.5532 -0.9905 6.7511 21 7 3.4810 -1.2779 2.1257 22 1 -0.3633 0.0913 1.0236 23 1 -0.3634 0.8408 -0.5908 24 1 -0.3633 -0.9321 -0.4328 25 1 -0.0517 3.0972 1.3776 26 1 3.1498 -1.1383 -0.5143 27 1 1.6083 -2.0282 -0.5146 28 1 0.7546 -3.0098 1.6668 29 1 6.4795 -1.0260 3.3639 30 1 5.2593 0.2374 3.0754 31 1 6.0208 0.0847 4.6770 32 1 4.1071 -2.9204 5.6808 33 1 6.1691 -2.5184 7.1024 34 1 6.6670 -1.1350 5.9891 35 1 4.5022 0.0743 6.5241 36 1 4.0044 -1.3093 7.6373 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136924828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:16 Heat of formation + Delta-G solvation = 96.522583 kcal Electronic energy + Delta-G solvation = -18258.455472 eV Core-core repulsion = 15485.149853 eV Total energy + Delta-G solvation = -2773.305619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72012 -39.26381 -37.25754 -35.00034 -33.27506 -30.70221 -28.40636 -28.26020 -27.53247 -24.74777 -23.34727 -23.14597 -21.60765 -20.36260 -19.11725 -18.72957 -17.39147 -16.85725 -16.59127 -16.28792 -15.64578 -15.33957 -15.21521 -15.04309 -14.13804 -14.09160 -13.79998 -13.39369 -13.29505 -13.15386 -12.83031 -12.61491 -12.35044 -12.30956 -12.27432 -12.06061 -12.02314 -11.79543 -11.48560 -10.65788 -10.59716 -10.35479 -9.89044 -8.86165 -8.38218 -7.82921 -5.27310 0.18949 0.37275 0.97826 1.42392 1.44278 1.52249 1.82687 2.16069 2.53318 2.85137 3.31185 3.67955 3.75966 3.84763 3.96584 3.98540 4.16435 4.51930 4.53309 4.60657 4.71791 4.74427 4.83434 4.84207 4.87010 5.03172 5.06955 5.18168 5.31016 5.34515 5.62835 5.72253 5.92207 6.06879 6.31280 7.13563 7.26720 7.85244 8.27123 9.20717 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.006428 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.492012 B = 4354.816973 C = 5246.820629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.602 5.602 3 C -0.243 4.243 4 H 0.064 0.936 5 C -0.056 4.056 6 N -0.939 5.939 7 Si 0.966 3.034 8 H -0.280 1.280 9 H -0.297 1.297 10 H -0.274 1.274 11 C 0.212 3.788 12 C 0.092 3.908 13 C -0.312 4.312 14 S 0.101 5.899 15 C 0.299 3.701 16 N -0.563 5.563 17 C 0.105 3.895 18 C 0.056 3.944 19 C -0.152 4.152 20 C -0.195 4.195 21 N -0.563 5.563 22 H -0.002 1.002 23 H 0.021 0.979 24 H 0.039 0.961 25 H 0.245 0.755 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.182 0.818 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.611 -11.750 10.378 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.323 5.323 3 C -0.373 4.373 4 H 0.082 0.918 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.794 3.206 8 H -0.206 1.206 9 H -0.223 1.223 10 H -0.199 1.199 11 C 0.083 3.917 12 C -0.041 4.041 13 C -0.453 4.453 14 S 0.349 5.651 15 C -0.071 4.071 16 N -0.281 5.281 17 C -0.040 4.040 18 C -0.048 4.048 19 C -0.190 4.190 20 C -0.234 4.234 21 N -0.289 5.289 22 H 0.016 0.984 23 H 0.039 0.961 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.199 0.801 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.723 -11.802 11.144 18.427 hybrid contribution -0.146 1.656 -0.941 1.910 sum 8.577 -10.146 10.203 16.752 Atomic orbital electron populations 1.20569 0.82081 0.96497 0.97465 1.44327 1.02330 1.01192 1.84429 1.19417 0.96774 0.85769 1.35356 0.91772 1.25705 0.98727 1.01556 0.99024 1.70261 1.20289 1.26876 1.41242 0.85300 0.78093 0.79920 0.77275 1.20632 1.22326 1.19931 1.19738 0.96518 0.87643 0.87784 1.21295 0.89281 0.92723 1.00810 1.26406 1.09244 1.12780 0.96884 1.82943 1.20414 1.45600 1.16108 1.23841 0.94357 0.97389 0.91534 1.45341 1.23717 1.48676 1.10398 1.21614 0.89236 0.92346 1.00788 1.21892 1.06596 0.98407 0.77943 1.23510 0.91044 1.03731 1.00721 1.23539 1.01921 0.98399 0.99560 1.66181 1.27113 1.30311 1.05250 0.98412 0.96060 0.94217 0.94541 0.92811 0.89336 0.80073 0.91972 0.93498 0.89047 0.85024 0.84975 0.87523 0.89786 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.15 9.02 127.77 1.15 10.30 16 2 N -0.60 -31.88 2.91 -731.32 -2.13 -34.01 16 3 C -0.24 -14.16 9.68 84.03 0.81 -13.34 16 4 H 0.06 3.75 7.86 -2.91 -0.02 3.73 16 5 C -0.06 -3.30 5.06 84.86 0.43 -2.87 16 6 N -0.94 -58.34 10.67 21.65 0.23 -58.11 16 7 Si 0.97 47.64 29.58 68.60 2.03 49.67 16 8 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 9 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 10 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 11 C 0.21 9.38 6.14 85.64 0.53 9.91 16 12 C 0.09 4.02 6.32 41.41 0.26 4.28 16 13 C -0.31 -11.71 11.08 66.71 0.74 -10.97 16 14 S 0.10 3.26 21.81 -56.49 -1.23 2.03 16 15 C 0.30 11.28 7.74 179.32 1.39 12.67 16 16 N -0.56 -17.18 3.32 -711.59 -2.36 -19.54 16 17 C 0.10 2.95 9.80 127.77 1.25 4.21 16 18 C 0.06 1.22 6.20 44.99 0.28 1.49 16 19 C -0.15 -2.20 9.72 30.59 0.30 -1.91 16 20 C -0.19 -3.55 10.12 30.60 0.31 -3.24 16 21 N -0.56 -25.33 9.80 -189.86 -1.86 -27.19 16 22 H 0.00 -0.14 7.40 -2.39 -0.02 -0.16 16 23 H 0.02 1.15 7.21 -2.39 -0.02 1.13 16 24 H 0.04 1.67 7.83 -2.39 -0.02 1.65 16 25 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 26 H 0.05 2.40 8.03 -2.39 -0.02 2.38 16 27 H 0.09 3.27 7.81 -2.38 -0.02 3.25 16 28 H 0.18 5.90 8.06 -2.91 -0.02 5.88 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.69 7.62 -2.38 -0.02 1.68 16 31 H 0.09 2.00 6.33 -2.39 -0.02 1.98 16 32 H 0.13 2.62 7.30 -2.38 -0.02 2.61 16 33 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.49 6.46 -2.39 -0.02 1.47 16 35 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 36 H 0.12 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -72.85 313.06 3.20 -69.65 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.07 Total: 6.95 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 7.45 Total: 10.53 kcal Atomic # 7 Polarization: -132.72 SS G_CDS: -6.12 Total: -138.84 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.23 Total: 2.03 kcal Total: -72.85 3.20 -69.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136924828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.176 kcal (2) G-P(sol) polarization free energy of solvation -72.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds