Wall clock time and date at job start Mon Mar 30 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46958 * 111.02099 * 2 1 4 4 C 1.53046 * 109.38394 * 183.16361 * 3 2 1 5 5 N 1.46948 * 109.37046 * 301.61078 * 4 3 2 6 6 C 1.46893 * 111.00299 * 183.18582 * 5 4 3 7 7 C 1.46953 * 110.87887 * 59.31796 * 5 4 3 8 8 H 1.08994 * 109.49092 * 60.64988 * 7 5 4 9 9 C 1.50706 * 109.48766 * 180.71673 * 7 5 4 10 10 N 1.28798 * 124.98949 * 224.88500 * 9 7 5 11 11 C 1.33644 * 116.05747 * 179.97438 * 10 9 7 12 12 C 1.41162 * 122.85886 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00019 * 339.80288 * 12 11 10 14 14 C 1.39725 * 119.99947 * 159.80665 * 12 11 10 15 15 N 1.31019 * 119.99868 * 344.99189 * 14 12 11 16 16 Si 1.86794 * 120.00020 * 164.99546 * 14 12 11 17 17 H 1.48500 * 109.47408 * 94.25300 * 16 14 12 18 18 H 1.48501 * 109.46994 * 214.25222 * 16 14 12 19 19 H 1.48508 * 109.47222 * 334.25226 * 16 14 12 20 20 C 1.37692 * 114.27753 * 0.02562 * 11 10 9 21 21 S 1.70990 * 108.83900 * 359.77013 * 20 11 10 22 22 C 1.46961 * 111.00077 * 123.81130 * 2 1 3 23 23 H 1.09004 * 109.46993 * 296.19289 * 1 2 3 24 24 H 1.08998 * 109.47041 * 56.18743 * 1 2 3 25 25 H 1.09000 * 109.47443 * 176.19124 * 1 2 3 26 26 H 1.09005 * 109.47003 * 63.19417 * 3 2 1 27 27 H 1.09001 * 109.50562 * 303.15932 * 3 2 1 28 28 H 1.09009 * 109.48908 * 181.63786 * 4 3 2 29 29 H 1.09002 * 109.50301 * 61.59496 * 4 3 2 30 30 H 1.08994 * 109.47374 * 296.20412 * 6 5 4 31 31 H 1.09004 * 109.47308 * 56.20291 * 6 5 4 32 32 H 1.09007 * 109.47215 * 176.19643 * 6 5 4 33 33 H 0.97003 * 120.00222 * 180.02562 * 15 14 12 34 34 H 1.07999 * 125.57823 * 180.02562 * 20 11 10 35 35 H 1.08999 * 109.49039 * 56.84038 * 22 2 1 36 36 H 1.09008 * 109.48933 * 296.80332 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9961 1.3718 0.0000 4 6 3.5239 1.3288 -0.0797 5 7 4.0502 0.5656 1.0605 6 6 5.5191 0.5655 1.0610 7 6 3.5235 -0.8063 1.0602 8 1 3.8257 -1.3117 0.1430 9 6 4.0682 -1.5542 2.2498 10 7 4.5375 -2.7532 2.2167 11 6 4.9754 -3.2445 3.3799 12 6 5.5178 -4.5415 3.5079 13 1 5.3061 -5.2915 2.7602 14 6 6.3284 -4.8549 4.6019 15 7 6.8266 -3.8968 5.3439 16 14 6.7020 -6.6398 5.0066 17 1 7.9865 -7.0326 4.3733 18 1 6.8061 -6.8022 6.4790 19 1 5.6105 -7.5037 4.4892 20 6 4.8525 -2.3778 4.4427 21 16 4.1623 -0.9158 3.8860 22 6 1.9957 -0.7635 1.1400 23 1 -0.3633 0.4536 0.9222 24 1 -0.3633 0.5719 -0.8538 25 1 -0.3634 -1.0254 -0.0683 26 1 1.6938 1.8772 0.9173 27 1 1.6021 1.9131 -0.8601 28 1 3.9183 2.3447 -0.0505 29 1 3.8264 0.8480 -1.0100 30 1 5.8827 0.0518 0.1711 31 1 5.8825 1.5932 1.0612 32 1 5.8821 0.0517 1.9511 33 1 7.3897 -4.1143 6.1032 34 1 5.1479 -2.5857 5.4605 35 1 1.6013 -1.7792 1.1107 36 1 1.6934 -0.2827 2.0704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226081064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:33 Heat of formation + Delta-G solvation = 51.629020 kcal Electronic energy + Delta-G solvation = -18426.484042 eV Core-core repulsion = 15651.231693 eV Total energy + Delta-G solvation = -2775.252350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.38588 -37.65659 -35.34464 -33.48559 -31.44181 -29.20238 -28.26461 -25.70538 -25.24292 -24.33948 -22.97320 -21.51350 -19.67318 -18.71569 -17.11254 -16.13334 -15.68585 -15.38337 -14.83746 -14.70336 -14.48487 -14.41790 -13.83418 -13.25906 -12.85460 -12.48306 -12.42076 -12.11915 -11.83622 -11.59222 -11.55812 -11.34014 -11.23645 -11.04430 -10.90395 -10.74848 -10.67192 -10.30418 -9.49238 -9.12741 -8.40655 -8.33662 -8.09768 -7.98329 -7.19339 -6.64318 -4.32256 2.28481 2.89726 3.04237 3.12988 3.19606 3.70300 3.92090 3.99951 4.06240 4.25905 4.90969 5.04758 5.16076 5.26848 5.34943 5.40910 5.48521 5.57282 5.60183 5.74654 5.77639 5.82178 5.87100 5.95856 6.07429 6.23915 6.35154 6.78025 6.97946 6.99738 7.22647 7.25969 7.30049 7.52744 7.64137 8.31645 8.75577 8.83360 9.46710 10.35819 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033757 B = 0.005116 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.256230 B = 5472.132218 C = 5748.598533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.056 3.944 4 C 0.058 3.942 5 N -0.535 5.535 6 C 0.024 3.976 7 C 0.177 3.823 8 H 0.068 0.932 9 C 0.041 3.959 10 N -0.467 5.467 11 C 0.200 3.800 12 C -0.426 4.426 13 H 0.078 0.922 14 C 0.070 3.930 15 N -0.808 5.808 16 Si 0.917 3.083 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.353 4.353 21 S 0.017 5.983 22 C 0.069 3.931 23 H 0.026 0.974 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.025 0.975 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.276 0.724 34 H 0.168 0.832 35 H 0.083 0.917 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 9.167 -6.987 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.070 4.070 5 N -0.261 5.261 6 C -0.124 4.124 7 C 0.065 3.935 8 H 0.086 0.914 9 C -0.240 4.240 10 N -0.184 5.184 11 C 0.077 3.923 12 C -0.462 4.462 13 H 0.096 0.904 14 C -0.146 4.146 15 N -0.437 5.437 16 Si 0.741 3.259 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.494 4.494 21 S 0.266 5.734 22 C -0.060 4.060 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.185 0.815 35 H 0.101 0.899 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.381 9.794 -6.814 14.030 hybrid contribution 0.778 -1.702 0.508 1.939 sum -6.603 8.092 -6.306 12.200 Atomic orbital electron populations 1.22323 0.87157 1.02318 1.00322 1.62124 1.07812 1.13763 1.43381 1.22186 0.94709 0.89481 1.00889 1.22141 0.94260 0.98435 0.92160 1.62106 1.08592 1.13148 1.42235 1.22401 0.86529 1.01551 1.01906 1.19801 0.93028 0.87062 0.93646 0.91399 1.26777 1.06348 0.94654 0.96187 1.67064 1.12221 1.09806 1.29293 1.17860 0.95029 0.95684 0.83698 1.18696 1.26205 0.94508 1.06814 0.90356 1.25701 0.94069 0.99360 0.95428 1.69850 1.25410 1.33405 1.15014 0.86168 0.79335 0.82302 0.78052 1.19775 1.20254 1.18614 1.26136 1.21311 0.97216 1.04738 1.82920 1.63183 1.20989 1.06335 1.22186 0.93315 0.98785 0.91704 0.95552 0.91509 0.91275 0.93861 0.90446 0.90136 0.94006 0.95638 0.91574 0.90255 0.91328 0.81537 0.89863 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.60 60.06 0.58 0.87 16 2 N -0.55 -7.32 4.97 -242.75 -1.21 -8.53 16 3 C 0.06 0.66 5.62 -3.77 -0.02 0.63 16 4 C 0.06 0.74 5.62 -3.77 -0.02 0.72 16 5 N -0.54 -8.56 4.62 -236.14 -1.09 -9.66 16 6 C 0.02 0.39 9.26 60.06 0.56 0.95 16 7 C 0.18 3.21 2.49 -68.81 -0.17 3.04 16 8 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 9 C 0.04 0.92 4.99 -13.55 -0.07 0.85 16 10 N -0.47 -12.17 10.65 -8.36 -0.09 -12.26 16 11 C 0.20 5.61 6.40 -86.17 -0.55 5.06 16 12 C -0.43 -12.04 9.39 -37.92 -0.36 -12.40 16 13 H 0.08 2.17 7.89 -52.49 -0.41 1.76 16 14 C 0.07 1.84 5.31 -17.34 -0.09 1.75 16 15 N -0.81 -21.79 10.86 55.54 0.60 -21.18 16 16 Si 0.92 19.66 29.58 -169.99 -5.03 14.64 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 20 C -0.35 -9.49 9.73 30.53 0.30 -9.19 16 21 S 0.02 0.38 22.31 -107.50 -2.40 -2.01 16 22 C 0.07 1.11 4.88 -3.76 -0.02 1.09 16 23 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.08 0.86 8.13 -51.92 -0.42 0.44 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.08 1.53 6.41 -51.92 -0.33 1.19 16 33 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 34 H 0.17 4.69 6.37 -52.49 -0.33 4.36 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 LS Contribution 304.23 15.07 4.58 4.58 Total: -1.00 -29.46 304.23 -9.78 -39.25 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.29 Total: 1.80 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 0.13 Total: -6.63 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -1.78 Total: -51.63 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.64 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.40 Total: -2.01 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.46 -9.78 -39.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226081064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.874 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds