Wall clock time and date at job start Mon Mar 30 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46958 * 111.02099 * 2 1 4 4 C 1.53046 * 109.38394 * 183.16361 * 3 2 1 5 5 N 1.46948 * 109.37046 * 301.61078 * 4 3 2 6 6 C 1.46893 * 111.00299 * 183.18582 * 5 4 3 7 7 C 1.46953 * 110.87887 * 59.31796 * 5 4 3 8 8 H 1.08994 * 109.49092 * 60.64988 * 7 5 4 9 9 C 1.50706 * 109.48766 * 180.71673 * 7 5 4 10 10 N 1.28798 * 124.98949 * 224.88500 * 9 7 5 11 11 C 1.33644 * 116.05747 * 179.97438 * 10 9 7 12 12 C 1.41162 * 122.85886 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00019 * 339.80288 * 12 11 10 14 14 C 1.39725 * 119.99947 * 159.80665 * 12 11 10 15 15 N 1.31019 * 119.99868 * 344.99189 * 14 12 11 16 16 Si 1.86794 * 120.00020 * 164.99546 * 14 12 11 17 17 H 1.48500 * 109.47408 * 94.25300 * 16 14 12 18 18 H 1.48501 * 109.46994 * 214.25222 * 16 14 12 19 19 H 1.48508 * 109.47222 * 334.25226 * 16 14 12 20 20 C 1.37692 * 114.27753 * 0.02562 * 11 10 9 21 21 S 1.70990 * 108.83900 * 359.77013 * 20 11 10 22 22 C 1.46961 * 111.00077 * 123.81130 * 2 1 3 23 23 H 1.09004 * 109.46993 * 296.19289 * 1 2 3 24 24 H 1.08998 * 109.47041 * 56.18743 * 1 2 3 25 25 H 1.09000 * 109.47443 * 176.19124 * 1 2 3 26 26 H 1.09005 * 109.47003 * 63.19417 * 3 2 1 27 27 H 1.09001 * 109.50562 * 303.15932 * 3 2 1 28 28 H 1.09009 * 109.48908 * 181.63786 * 4 3 2 29 29 H 1.09002 * 109.50301 * 61.59496 * 4 3 2 30 30 H 1.08994 * 109.47374 * 296.20412 * 6 5 4 31 31 H 1.09004 * 109.47308 * 56.20291 * 6 5 4 32 32 H 1.09007 * 109.47215 * 176.19643 * 6 5 4 33 33 H 0.97003 * 120.00222 * 180.02562 * 15 14 12 34 34 H 1.07999 * 125.57823 * 180.02562 * 20 11 10 35 35 H 1.08999 * 109.49039 * 56.84038 * 22 2 1 36 36 H 1.09008 * 109.48933 * 296.80332 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9961 1.3718 0.0000 4 6 3.5239 1.3288 -0.0797 5 7 4.0502 0.5656 1.0605 6 6 5.5191 0.5655 1.0610 7 6 3.5235 -0.8063 1.0602 8 1 3.8257 -1.3117 0.1430 9 6 4.0682 -1.5542 2.2498 10 7 4.5375 -2.7532 2.2167 11 6 4.9754 -3.2445 3.3799 12 6 5.5178 -4.5415 3.5079 13 1 5.3061 -5.2915 2.7602 14 6 6.3284 -4.8549 4.6019 15 7 6.8266 -3.8968 5.3439 16 14 6.7020 -6.6398 5.0066 17 1 7.9865 -7.0326 4.3733 18 1 6.8061 -6.8022 6.4790 19 1 5.6105 -7.5037 4.4892 20 6 4.8525 -2.3778 4.4427 21 16 4.1623 -0.9158 3.8860 22 6 1.9957 -0.7635 1.1400 23 1 -0.3633 0.4536 0.9222 24 1 -0.3633 0.5719 -0.8538 25 1 -0.3634 -1.0254 -0.0683 26 1 1.6938 1.8772 0.9173 27 1 1.6021 1.9131 -0.8601 28 1 3.9183 2.3447 -0.0505 29 1 3.8264 0.8480 -1.0100 30 1 5.8827 0.0518 0.1711 31 1 5.8825 1.5932 1.0612 32 1 5.8821 0.0517 1.9511 33 1 7.3897 -4.1143 6.1032 34 1 5.1479 -2.5857 5.4605 35 1 1.6013 -1.7792 1.1107 36 1 1.6934 -0.2827 2.0704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226081064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:33 Heat of formation + Delta-G solvation = 29.552218 kcal Electronic energy + Delta-G solvation = -18427.441364 eV Core-core repulsion = 15651.231693 eV Total energy + Delta-G solvation = -2776.209672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71704 -39.46530 -36.52741 -35.44366 -32.86430 -30.41686 -29.98968 -27.73850 -26.38324 -25.81415 -24.17540 -23.08844 -20.94095 -20.57873 -18.97345 -18.06734 -16.98952 -16.63170 -16.38711 -16.11648 -15.90310 -15.58664 -15.09329 -14.89311 -14.61122 -13.94240 -13.63596 -13.41208 -13.33552 -13.27871 -13.08154 -12.87594 -12.73307 -12.45317 -12.31427 -12.14946 -11.91644 -11.81007 -11.49762 -11.08082 -10.27390 -9.93257 -9.49349 -9.31380 -9.17422 -8.63715 -6.42222 0.38349 1.04623 1.32840 1.37084 1.52341 1.73347 2.18158 2.24779 2.72482 2.91863 3.32686 3.56657 3.85051 4.02401 4.13238 4.21019 4.39149 4.48570 4.57317 4.63015 4.70758 4.73954 4.81834 4.90906 4.97433 5.00824 5.04129 5.07362 5.17929 5.43487 5.55127 5.80888 5.89703 6.08517 6.13690 6.20139 6.72539 6.75546 7.47506 8.38251 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033757 B = 0.005116 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.256230 B = 5472.132218 C = 5748.598533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.554 5.554 3 C 0.056 3.944 4 C 0.057 3.943 5 N -0.539 5.539 6 C 0.027 3.973 7 C 0.179 3.821 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.507 5.507 11 C 0.178 3.822 12 C -0.468 4.468 13 H 0.069 0.931 14 C 0.030 3.970 15 N -0.835 5.835 16 Si 0.994 3.006 17 H -0.262 1.262 18 H -0.263 1.263 19 H -0.261 1.261 20 C -0.394 4.394 21 S 0.070 5.930 22 C 0.079 3.921 23 H 0.029 0.971 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.042 0.958 30 H 0.023 0.977 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.286 0.714 34 H 0.148 0.852 35 H 0.072 0.928 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.092 10.448 -7.951 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.072 4.072 4 C -0.071 4.071 5 N -0.265 5.265 6 C -0.121 4.121 7 C 0.067 3.933 8 H 0.073 0.927 9 C -0.219 4.219 10 N -0.224 5.224 11 C 0.056 3.944 12 C -0.504 4.504 13 H 0.087 0.913 14 C -0.183 4.183 15 N -0.463 5.463 16 Si 0.814 3.186 17 H -0.187 1.187 18 H -0.187 1.187 19 H -0.185 1.185 20 C -0.534 4.534 21 S 0.320 5.680 22 C -0.051 4.051 23 H 0.048 0.952 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.117 0.883 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.090 0.910 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.192 11.115 -7.777 15.847 hybrid contribution 0.994 -1.948 0.720 2.302 sum -7.198 9.167 -7.057 13.625 Atomic orbital electron populations 1.22408 0.85265 1.02867 1.01573 1.62136 1.09530 1.14660 1.41549 1.22307 0.93946 0.88647 1.02300 1.22334 0.95043 0.99117 0.90572 1.62153 1.08463 1.11514 1.44374 1.22366 0.86772 1.03043 0.99942 1.19855 0.94568 0.87982 0.90931 0.92689 1.27597 1.02994 0.93723 0.97544 1.67115 1.14629 1.11703 1.28949 1.18189 0.95294 0.96272 0.84685 1.18992 1.28147 0.94956 1.08262 0.91252 1.26664 0.93029 1.04265 0.94365 1.69918 1.25343 1.35767 1.15296 0.85018 0.79267 0.75881 0.78394 1.18701 1.18747 1.18456 1.26009 1.23598 0.99812 1.03965 1.82475 1.62056 1.18056 1.05429 1.21966 0.91496 0.98875 0.92769 0.95206 0.89045 0.91408 0.93910 0.87266 0.87293 0.94017 0.95841 0.88323 0.93969 0.90400 0.83491 0.90989 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.60 127.69 1.23 1.72 16 2 N -0.55 -13.48 4.97 -921.91 -4.58 -18.06 16 3 C 0.06 1.11 5.62 86.31 0.49 1.60 16 4 C 0.06 1.25 5.62 86.31 0.49 1.73 16 5 N -0.54 -16.34 4.62 -901.00 -4.17 -20.50 16 6 C 0.03 0.84 9.26 127.69 1.18 2.02 16 7 C 0.18 6.45 2.49 44.18 0.11 6.56 16 8 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 9 C 0.06 2.87 4.99 88.56 0.44 3.31 16 10 N -0.51 -27.46 10.65 -180.35 -1.92 -29.38 16 11 C 0.18 10.46 6.40 39.46 0.25 10.71 16 12 C -0.47 -27.61 9.39 23.35 0.22 -27.39 16 13 H 0.07 4.04 7.89 -2.91 -0.02 4.02 16 14 C 0.03 1.62 5.31 85.17 0.45 2.07 16 15 N -0.84 -46.22 10.86 21.80 0.24 -45.98 16 16 Si 0.99 40.79 29.58 68.60 2.03 42.82 16 17 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 18 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 C -0.39 -22.05 9.73 67.69 0.66 -21.39 16 21 S 0.07 3.20 22.31 -56.49 -1.26 1.94 16 22 C 0.08 2.45 4.88 86.31 0.42 2.87 16 23 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.09 1.27 8.13 -2.39 -0.02 1.25 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.11 1.55 8.13 -2.39 -0.02 1.53 16 28 H 0.11 1.83 8.13 -2.38 -0.02 1.82 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 2.38 8.13 -2.39 -0.02 2.36 16 32 H 0.04 1.62 6.41 -2.38 -0.02 1.60 16 33 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 34 H 0.15 8.71 6.37 -2.91 -0.02 8.69 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -66.72 304.23 -2.66 -69.38 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.06 Total: 15.97 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 5.94 Total: -16.18 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -10.43 Total: -113.93 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.26 Total: 1.94 kcal Total: -66.72 -2.66 -69.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226081064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.935 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds