Wall clock time and date at job start Mon Mar 30 2020 06:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.46847 * 2 1 4 4 C 1.46498 * 119.99671 * 85.94422 * 3 2 1 5 5 C 1.50698 * 109.47274 * 89.99598 * 4 3 2 6 6 H 1.08004 * 119.99940 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00054 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99878 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00155 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47212 * 89.99393 * 9 7 5 11 11 H 1.48500 * 109.47352 * 209.99179 * 9 7 5 12 12 H 1.48494 * 109.47318 * 329.99550 * 9 7 5 13 13 C 1.34778 * 120.00035 * 265.94286 * 3 2 1 14 14 O 1.21600 * 119.99728 * 184.60405 * 13 3 2 15 15 C 1.47429 * 119.99735 * 4.60354 * 13 3 2 16 16 C 1.39991 * 120.59994 * 301.00683 * 15 13 3 17 17 C 1.38508 * 118.34457 * 179.76056 * 16 15 13 18 18 F 1.35108 * 120.26766 * 180.24309 * 17 16 15 19 19 C 1.38553 * 119.45813 * 0.56415 * 17 16 15 20 20 N 1.31866 * 121.18488 * 359.67729 * 19 17 16 21 21 C 1.32390 * 121.80405 * 0.02562 * 20 19 17 22 22 N 1.38386 * 119.80037 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.47389 * 299.99817 * 1 2 3 24 24 H 1.08999 * 109.47032 * 60.00110 * 1 2 3 25 25 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47032 * 119.99890 * 2 1 3 27 27 H 1.08996 * 109.47389 * 240.00183 * 2 1 3 28 28 H 1.08997 * 109.47143 * 210.00053 * 4 3 2 29 29 H 1.09002 * 109.47553 * 329.99515 * 4 3 2 30 30 H 0.97003 * 120.00301 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.82461 * 0.02562 * 16 15 13 32 32 H 1.08006 * 119.41006 * 179.69562 * 19 17 16 33 33 H 0.96998 * 120.00297 * 174.84396 * 22 21 20 34 34 H 0.97001 * 119.99481 * 354.84573 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1779 2.1017 1.2656 5 6 3.5687 1.8764 1.8001 6 1 4.2645 1.2586 1.2517 7 6 3.9534 2.4597 2.9887 8 7 5.1674 2.2634 3.4549 9 14 2.7503 3.5287 3.9368 10 1 1.9809 2.6854 4.8867 11 1 3.4982 4.5668 4.6906 12 1 1.8153 4.1837 2.9872 13 6 2.3208 1.9891 -1.1643 14 8 2.8047 3.1047 -1.1599 15 6 2.0650 1.3015 -2.4430 16 6 2.6652 0.0678 -2.7213 17 6 2.3883 -0.5394 -3.9350 18 9 2.9427 -1.7327 -4.2416 19 6 1.5435 0.0901 -4.8348 20 7 0.9927 1.2549 -4.5541 21 6 1.2191 1.8754 -3.4067 22 7 0.6187 3.0965 -3.1550 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.0207 3.1674 1.0993 29 1 1.4476 1.7351 1.9870 30 1 5.4380 2.6734 4.2913 31 1 3.3244 -0.4009 -2.0056 32 1 1.3320 -0.3817 -5.7830 33 1 0.7219 3.5182 -2.2876 34 1 0.0946 3.5308 -3.8462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233429477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:26 Heat of formation + Delta-G solvation = -34.945721 kcal Electronic energy + Delta-G solvation = -20494.624770 eV Core-core repulsion = 17149.405081 eV Total energy + Delta-G solvation = -3345.219688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.79975 -40.64242 -38.64316 -35.67661 -34.57268 -33.07380 -32.31225 -30.39343 -29.19816 -27.74396 -24.89546 -23.39848 -22.82908 -22.11441 -19.22238 -18.11428 -17.72565 -17.20343 -16.95452 -16.29749 -15.75027 -15.51194 -15.44358 -14.54886 -14.25671 -13.86972 -13.79304 -13.69060 -13.44266 -13.21936 -12.66948 -12.43583 -12.17923 -11.88802 -11.66809 -11.04333 -10.92064 -10.67920 -10.60041 -10.18300 -10.12855 -9.81767 -9.59572 -9.12025 -8.64578 -7.93502 -7.79092 -6.13526 -4.13022 0.79539 1.14961 3.02890 3.22262 3.30113 3.32924 3.34712 3.55463 3.72068 4.19049 4.34301 4.43828 4.68296 4.70261 5.15668 5.20461 5.23666 5.29560 5.49351 5.66294 5.71306 5.76450 5.95945 6.08775 6.33673 6.43045 6.57720 6.84142 7.04519 7.19891 7.28803 7.53523 7.96046 8.08682 8.38900 8.73186 8.90049 9.45695 10.99788 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025726 B = 0.005714 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.124988 B = 4899.005543 C = 5192.762337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.580 5.580 4 C 0.217 3.783 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.875 3.125 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.557 3.443 14 O -0.527 6.527 15 C -0.206 4.206 16 C -0.036 4.036 17 C -0.022 4.022 18 F -0.136 7.136 19 C 0.140 3.860 20 N -0.524 5.524 21 C 0.434 3.566 22 N -0.832 5.832 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.417 0.583 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 -5.197 -12.715 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 N -0.310 5.310 4 C 0.096 3.904 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.342 3.658 14 O -0.405 6.405 15 C -0.217 4.217 16 C -0.063 4.063 17 C -0.047 4.047 18 F -0.115 7.115 19 C -0.020 4.020 20 N -0.241 5.241 21 C 0.194 3.806 22 N -0.375 5.375 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.171 0.829 32 H 0.186 0.814 33 H 0.249 0.751 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -11.431 -4.175 -13.091 17.874 hybrid contribution 0.098 0.141 1.264 1.275 sum -11.334 -4.034 -11.827 16.870 Atomic orbital electron populations 1.22165 0.96514 1.01725 1.02060 1.21710 0.93872 0.83747 1.03468 1.47930 1.62615 1.13556 1.06916 1.19709 0.97773 0.92986 0.79892 1.21290 0.96849 1.32031 1.06697 0.90676 1.24853 0.95156 0.95827 0.97105 1.69892 1.17940 1.44381 1.21131 0.86870 0.81588 0.80986 0.80412 1.20060 1.20886 1.18916 1.17739 0.79175 0.85913 0.82934 1.90812 1.42955 1.19719 1.86978 1.20263 1.05156 0.97899 0.98378 1.21560 0.96673 0.92635 0.95403 1.18197 1.03669 0.85868 0.96963 1.91496 1.84201 1.42553 1.93206 1.22580 0.91188 0.89818 0.98463 1.67282 1.27339 1.10443 1.19040 1.18109 0.87776 0.86670 0.88004 1.42191 1.56463 1.19317 1.19497 0.92129 0.93188 0.91893 0.89453 0.90815 0.94139 0.95359 0.92488 0.82866 0.81438 0.75054 0.76469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.48 5.95 -4.04 -0.02 1.46 16 3 N -0.58 -11.41 2.46 -176.33 -0.43 -11.84 16 4 C 0.22 5.06 4.21 -5.20 -0.02 5.03 16 5 C -0.53 -14.83 9.94 -34.44 -0.34 -15.17 16 6 H 0.08 2.32 8.06 -52.48 -0.42 1.89 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 9 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 13 C 0.56 11.02 6.27 -12.52 -0.08 10.94 16 14 O -0.53 -12.40 15.92 5.28 0.08 -12.31 16 15 C -0.21 -3.30 5.01 -104.65 -0.52 -3.83 16 16 C -0.04 -0.52 7.72 -38.83 -0.30 -0.82 16 17 C -0.02 -0.28 7.32 -39.37 -0.29 -0.57 16 18 F -0.14 -1.69 17.28 2.25 0.04 -1.65 16 19 C 0.14 1.62 11.15 -17.42 -0.19 1.42 16 20 N -0.52 -6.91 10.38 -12.14 -0.13 -7.04 16 21 C 0.43 6.28 7.76 -155.12 -1.20 5.07 16 22 N -0.83 -10.49 8.94 31.28 0.28 -10.21 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 27 H 0.07 1.02 4.20 -51.93 -0.22 0.80 16 28 H 0.04 1.01 6.55 -51.93 -0.34 0.67 16 29 H 0.03 0.62 7.50 -51.93 -0.39 0.23 16 30 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.15 2.12 7.27 -52.49 -0.38 1.74 16 32 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.42 5.68 7.14 -40.82 -0.29 5.39 16 34 H 0.41 4.01 8.95 -40.82 -0.37 3.65 16 LS Contribution 296.76 15.07 4.47 4.47 Total: -1.00 -32.76 296.76 -5.96 -38.72 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.69 Total: 6.25 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -2.69 Total: 3.77 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.49 Total: -55.52 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.76 -5.96 -38.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233429477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.776 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds