Wall clock time and date at job start Mon Mar 30 2020 06:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.46847 * 2 1 4 4 C 1.46498 * 119.99671 * 85.94422 * 3 2 1 5 5 C 1.50698 * 109.47274 * 89.99598 * 4 3 2 6 6 H 1.08004 * 119.99940 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00054 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99878 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00155 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47212 * 89.99393 * 9 7 5 11 11 H 1.48500 * 109.47352 * 209.99179 * 9 7 5 12 12 H 1.48494 * 109.47318 * 329.99550 * 9 7 5 13 13 C 1.34778 * 120.00035 * 265.94286 * 3 2 1 14 14 O 1.21600 * 119.99728 * 184.60405 * 13 3 2 15 15 C 1.47429 * 119.99735 * 4.60354 * 13 3 2 16 16 C 1.39991 * 120.59994 * 301.00683 * 15 13 3 17 17 C 1.38508 * 118.34457 * 179.76056 * 16 15 13 18 18 F 1.35108 * 120.26766 * 180.24309 * 17 16 15 19 19 C 1.38553 * 119.45813 * 0.56415 * 17 16 15 20 20 N 1.31866 * 121.18488 * 359.67729 * 19 17 16 21 21 C 1.32390 * 121.80405 * 0.02562 * 20 19 17 22 22 N 1.38386 * 119.80037 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.47389 * 299.99817 * 1 2 3 24 24 H 1.08999 * 109.47032 * 60.00110 * 1 2 3 25 25 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47032 * 119.99890 * 2 1 3 27 27 H 1.08996 * 109.47389 * 240.00183 * 2 1 3 28 28 H 1.08997 * 109.47143 * 210.00053 * 4 3 2 29 29 H 1.09002 * 109.47553 * 329.99515 * 4 3 2 30 30 H 0.97003 * 120.00301 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.82461 * 0.02562 * 16 15 13 32 32 H 1.08006 * 119.41006 * 179.69562 * 19 17 16 33 33 H 0.96998 * 120.00297 * 174.84396 * 22 21 20 34 34 H 0.97001 * 119.99481 * 354.84573 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1779 2.1017 1.2656 5 6 3.5687 1.8764 1.8001 6 1 4.2645 1.2586 1.2517 7 6 3.9534 2.4597 2.9887 8 7 5.1674 2.2634 3.4549 9 14 2.7503 3.5287 3.9368 10 1 1.9809 2.6854 4.8867 11 1 3.4982 4.5668 4.6906 12 1 1.8153 4.1837 2.9872 13 6 2.3208 1.9891 -1.1643 14 8 2.8047 3.1047 -1.1599 15 6 2.0650 1.3015 -2.4430 16 6 2.6652 0.0678 -2.7213 17 6 2.3883 -0.5394 -3.9350 18 9 2.9427 -1.7327 -4.2416 19 6 1.5435 0.0901 -4.8348 20 7 0.9927 1.2549 -4.5541 21 6 1.2191 1.8754 -3.4067 22 7 0.6187 3.0965 -3.1550 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.0207 3.1674 1.0993 29 1 1.4476 1.7351 1.9870 30 1 5.4380 2.6734 4.2913 31 1 3.3244 -0.4009 -2.0056 32 1 1.3320 -0.3817 -5.7830 33 1 0.7219 3.5182 -2.2876 34 1 0.0946 3.5308 -3.8462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233429477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:25 Heat of formation + Delta-G solvation = -58.275710 kcal Electronic energy + Delta-G solvation = -20495.636434 eV Core-core repulsion = 17149.405081 eV Total energy + Delta-G solvation = -3346.231353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.79748 -41.86419 -40.03665 -37.19290 -35.66291 -34.95483 -33.71551 -31.85012 -30.38835 -29.39199 -26.17045 -24.86633 -24.02686 -23.60761 -20.65827 -19.26301 -19.03547 -18.75637 -18.49161 -17.66158 -17.07290 -16.68424 -16.50942 -16.32140 -15.59079 -15.09681 -15.01098 -14.87957 -14.84522 -14.56711 -14.33417 -13.75532 -13.62403 -13.39801 -13.24897 -12.66705 -12.41760 -12.14176 -11.98015 -11.76855 -11.71099 -11.41967 -10.96099 -10.81601 -10.51013 -9.53244 -8.88969 -8.33801 -6.39573 -0.29564 0.08506 1.32874 1.37107 1.47194 1.57701 2.11708 2.31362 2.35067 2.56044 3.00044 3.11958 3.34864 3.51675 3.71265 4.04528 4.14648 4.17883 4.33832 4.55068 4.62621 4.71136 4.75831 4.87926 4.91655 4.95326 5.29773 5.43683 5.44511 5.55166 5.97448 6.21057 6.34854 6.53113 6.62122 6.96766 7.13903 7.28133 8.83259 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025726 B = 0.005714 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.124988 B = 4899.005543 C = 5192.762337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.090 3.910 3 N -0.585 5.585 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.027 0.973 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.252 1.252 11 H -0.284 1.284 12 H -0.250 1.250 13 C 0.557 3.443 14 O -0.576 6.576 15 C -0.230 4.230 16 C -0.038 4.038 17 C -0.020 4.020 18 F -0.132 7.132 19 C 0.161 3.839 20 N -0.523 5.523 21 C 0.433 3.567 22 N -0.824 5.824 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.268 0.732 31 H 0.149 0.851 32 H 0.211 0.789 33 H 0.412 0.588 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 -5.831 -13.976 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.032 4.032 3 N -0.315 5.315 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.176 1.176 11 H -0.209 1.209 12 H -0.174 1.174 13 C 0.345 3.655 14 O -0.457 6.457 15 C -0.241 4.241 16 C -0.065 4.065 17 C -0.044 4.044 18 F -0.111 7.111 19 C 0.000 4.000 20 N -0.241 5.241 21 C 0.193 3.807 22 N -0.367 5.367 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.167 0.833 32 H 0.227 0.773 33 H 0.244 0.756 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -14.086 -4.839 -14.378 20.702 hybrid contribution 0.991 0.229 1.522 1.831 sum -13.095 -4.610 -12.856 18.922 Atomic orbital electron populations 1.22078 0.93861 1.03552 1.01903 1.21961 0.95993 0.81450 1.03836 1.47987 1.62613 1.14992 1.05862 1.19390 0.95360 0.92924 0.81955 1.21534 0.98409 1.31127 1.06528 0.95459 1.25867 0.97187 0.97343 0.98309 1.70058 1.20441 1.46088 1.22003 0.85706 0.79164 0.78983 0.79096 1.17628 1.20930 1.17400 1.18267 0.77790 0.85393 0.84075 1.90766 1.45084 1.22007 1.87860 1.19871 1.08025 0.99051 0.97199 1.21548 0.96376 0.92217 0.96313 1.18145 1.03886 0.85941 0.96457 1.91511 1.84220 1.42334 1.93072 1.23260 0.88880 0.88671 0.99207 1.67457 1.27554 1.11025 1.18035 1.18201 0.87440 0.87039 0.87972 1.42194 1.56007 1.18821 1.19641 0.92558 0.93019 0.89021 0.90370 0.89236 0.95466 0.93023 0.92279 0.83349 0.77287 0.75646 0.74956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 10.24 71.98 0.74 -2.93 16 2 C 0.09 2.72 5.95 86.38 0.51 3.23 16 3 N -0.59 -23.31 2.46 -830.03 -2.04 -25.34 16 4 C 0.23 10.62 4.21 85.63 0.36 10.98 16 5 C -0.54 -31.19 9.94 25.60 0.25 -30.94 16 6 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 7 C 0.01 0.64 5.47 84.65 0.46 1.10 16 8 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 9 Si 0.95 43.31 27.47 68.60 1.88 45.19 16 10 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 13 C 0.56 22.48 6.27 86.66 0.54 23.02 16 14 O -0.58 -28.09 15.92 -4.03 -0.06 -28.15 16 15 C -0.23 -7.27 5.01 -19.88 -0.10 -7.37 16 16 C -0.04 -1.05 7.72 22.76 0.18 -0.87 16 17 C -0.02 -0.45 7.32 22.41 0.16 -0.29 16 18 F -0.13 -2.95 17.28 44.97 0.78 -2.18 16 19 C 0.16 3.11 11.15 84.76 0.95 4.06 16 20 N -0.52 -12.26 10.38 -192.32 -2.00 -14.25 16 21 C 0.43 11.86 7.76 133.61 1.04 12.89 16 22 N -0.82 -19.87 8.94 -54.97 -0.49 -20.36 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 2.49 8.10 -2.39 -0.02 2.47 16 27 H 0.09 2.41 4.20 -2.39 -0.01 2.40 16 28 H 0.03 1.36 6.55 -2.39 -0.02 1.35 16 29 H 0.05 2.20 7.50 -2.39 -0.02 2.18 16 30 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.15 4.14 7.27 -2.91 -0.02 4.11 16 32 H 0.21 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.41 11.12 7.14 -92.71 -0.66 10.46 16 34 H 0.42 7.60 8.95 -92.71 -0.83 6.77 16 Total: -1.00 -73.81 296.76 3.08 -70.73 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.39 Total: 20.64 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.09 Total: 12.90 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -4.23 Total: -119.14 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.06 Total: -28.15 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -73.81 3.08 -70.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233429477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.454 kcal (2) G-P(sol) polarization free energy of solvation -73.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds