Wall clock time and date at job start Mon Mar 30 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38379 * 120.00170 * 2 1 4 4 N 1.32396 * 119.79893 * 354.68638 * 3 2 1 5 5 C 1.31870 * 121.80334 * 180.02562 * 4 3 2 6 6 C 1.38563 * 121.18496 * 359.97438 * 5 4 3 7 7 F 1.35102 * 120.26990 * 180.02562 * 6 5 4 8 8 C 1.38505 * 119.45832 * 0.02562 * 6 5 4 9 9 C 1.39999 * 118.34585 * 0.02562 * 8 6 5 10 10 C 1.47425 * 120.59870 * 180.02562 * 9 8 6 11 11 O 1.21603 * 120.00276 * 130.28155 * 10 9 8 12 12 N 1.34777 * 119.99920 * 310.29136 * 10 9 8 13 13 C 1.46498 * 119.99871 * 4.45516 * 12 10 9 14 14 C 1.46501 * 120.00154 * 184.46258 * 12 10 9 15 15 C 1.50703 * 109.47215 * 89.99190 * 14 12 10 16 16 H 1.08002 * 119.99678 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00035 * 179.97438 * 15 14 12 18 18 N 1.31512 * 119.99858 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46939 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47034 * 120.00399 * 19 17 15 22 22 H 1.48503 * 109.46850 * 240.00331 * 19 17 15 23 23 H 1.09001 * 109.47310 * 300.00129 * 1 2 3 24 24 H 1.09004 * 109.47090 * 60.00038 * 1 2 3 25 25 H 1.08997 * 109.47320 * 180.02562 * 1 2 3 26 26 H 0.97003 * 119.99814 * 179.97438 * 2 1 3 27 27 H 1.08003 * 119.40577 * 180.27359 * 5 4 3 28 28 H 1.08001 * 120.82583 * 179.97438 * 8 6 5 29 29 H 1.08996 * 109.47373 * 93.08373 * 13 12 10 30 30 H 1.09002 * 109.47270 * 213.08462 * 13 12 10 31 31 H 1.09003 * 109.47676 * 333.08304 * 13 12 10 32 32 H 1.08999 * 109.46935 * 209.99153 * 14 12 10 33 33 H 1.08999 * 109.46923 * 329.99211 * 14 12 10 34 34 H 0.97000 * 120.00222 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1569 1.1984 0.0000 4 7 1.4952 2.3402 -0.1064 5 6 2.1145 3.5044 -0.1112 6 6 3.4936 3.5840 -0.0038 7 9 4.1090 4.7867 -0.0102 8 6 4.2362 2.4204 0.1101 9 6 3.5573 1.1960 0.1118 10 6 4.2983 -0.0728 0.2310 11 8 3.9529 -0.9042 1.0485 12 7 5.3588 -0.3113 -0.5659 13 6 5.8350 0.7280 -1.4819 14 6 6.0351 -1.6099 -0.5162 15 6 5.3971 -2.5469 -1.5093 16 1 4.5708 -2.2087 -2.1170 17 6 5.8690 -3.8355 -1.6428 18 7 6.8755 -4.2471 -0.9031 19 14 5.0787 -4.9967 -2.8742 20 1 3.9744 -4.2957 -3.5773 21 1 6.0953 -5.4354 -3.8637 22 1 4.5386 -6.1818 -2.1608 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.9500 -0.8401 0.0004 27 1 1.5358 4.4125 -0.1955 28 1 5.3123 2.4566 0.1947 29 1 6.6211 1.3071 -0.9974 30 1 6.2305 0.2630 -2.3850 31 1 5.0079 1.3874 -1.7451 32 1 7.0887 -1.4805 -0.7638 33 1 5.9461 -2.0277 0.4866 34 1 7.2073 -5.1537 -0.9967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234503301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:11 Heat of formation + Delta-G solvation = -33.063003 kcal Electronic energy + Delta-G solvation = -20305.912911 eV Core-core repulsion = 16960.774864 eV Total energy + Delta-G solvation = -3345.138048 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -48.76410 -40.56245 -38.46704 -35.76171 -34.81289 -33.04191 -32.16410 -29.97274 -27.92137 -26.18032 -26.04307 -24.53684 -22.69978 -22.19547 -19.34925 -18.09276 -17.36504 -17.03972 -16.60476 -16.08228 -15.65822 -15.30652 -14.95600 -14.56413 -14.36422 -14.21931 -14.11499 -13.46017 -12.93922 -12.86969 -12.56352 -12.37397 -12.24157 -11.96363 -11.86060 -11.30487 -10.96747 -10.69817 -10.26450 -10.11624 -10.01622 -9.79649 -9.67321 -9.03700 -8.52171 -7.81815 -7.58313 -6.12889 -4.18626 0.84765 1.22447 3.11937 3.23852 3.28616 3.31873 3.35145 3.65317 3.87620 4.23995 4.36046 4.44000 4.70971 4.82124 5.14224 5.21199 5.30909 5.40639 5.58158 5.58997 5.73045 5.78766 5.81857 5.85320 6.15743 6.45406 6.92455 7.12435 7.29805 7.33283 7.41465 7.82635 8.05776 8.12517 8.24607 8.74768 8.91228 9.46943 10.95199 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.005759 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.925634 B = 4860.955875 C = 5616.688005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.707 5.707 3 C 0.435 3.565 4 N -0.523 5.523 5 C 0.143 3.857 6 C -0.031 4.031 7 F -0.138 7.138 8 C -0.036 4.036 9 C -0.212 4.212 10 C 0.556 3.444 11 O -0.537 6.537 12 N -0.588 5.588 13 C 0.077 3.923 14 C 0.243 3.757 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.898 3.102 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.282 1.282 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.424 0.576 27 H 0.167 0.833 28 H 0.150 0.850 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.036 0.964 33 H 0.048 0.952 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 13.890 -0.294 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.339 5.339 3 C 0.197 3.803 4 N -0.240 5.240 5 C -0.018 4.018 6 C -0.056 4.056 7 F -0.117 7.117 8 C -0.063 4.063 9 C -0.223 4.223 10 C 0.342 3.658 11 O -0.415 6.415 12 N -0.319 5.319 13 C -0.067 4.067 14 C 0.124 3.876 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.208 1.208 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.264 0.736 27 H 0.184 0.816 28 H 0.168 0.832 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.009 13.200 0.086 15.982 hybrid contribution 0.923 -0.679 -0.698 1.342 sum -8.086 12.521 -0.612 14.917 Atomic orbital electron populations 1.21512 0.79117 1.02033 1.01847 1.44500 1.06971 1.05227 1.77246 1.18183 0.86671 0.86888 0.88604 1.67317 1.38716 0.96715 1.21257 1.22603 0.90110 0.95844 0.93293 1.18190 0.92127 0.81111 1.14134 1.91477 1.83034 1.42224 1.94980 1.21608 1.01165 0.89831 0.93667 1.20326 0.93137 0.95190 1.13620 1.17751 0.80972 0.85225 0.81865 1.90771 1.67382 1.47178 1.36202 1.48121 1.29904 1.16630 1.37238 1.21851 0.98918 0.91353 0.94627 1.19390 0.92030 0.77104 0.99064 1.21433 1.17379 0.96783 1.21303 0.92378 1.24933 0.94994 0.97908 0.96158 1.69937 1.25431 1.18166 1.39535 0.86439 0.79252 0.80809 0.80907 1.19814 1.20874 1.20800 0.92522 0.92332 0.90836 0.73585 0.81588 0.83239 0.93327 0.90558 0.92028 0.94647 0.93412 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.18 10.72 59.85 0.64 1.82 16 2 N -0.71 -11.15 5.67 -67.00 -0.38 -11.53 16 3 C 0.44 7.06 7.47 -155.12 -1.16 5.90 16 4 N -0.52 -7.51 9.55 -12.14 -0.12 -7.62 16 5 C 0.14 1.73 11.15 -17.42 -0.19 1.53 16 6 C -0.03 -0.39 7.32 -39.36 -0.29 -0.68 16 7 F -0.14 -1.70 17.28 2.25 0.04 -1.66 16 8 C -0.04 -0.51 7.74 -38.82 -0.30 -0.81 16 9 C -0.21 -3.57 4.89 -104.65 -0.51 -4.08 16 10 C 0.56 11.48 6.62 -12.52 -0.08 11.40 16 11 O -0.54 -12.92 15.23 5.28 0.08 -12.83 16 12 N -0.59 -12.23 2.86 -184.23 -0.53 -12.76 16 13 C 0.08 1.22 9.13 59.85 0.55 1.77 16 14 C 0.24 6.16 5.21 -5.19 -0.03 6.13 16 15 C -0.53 -14.50 9.39 -34.44 -0.32 -14.83 16 16 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 19 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.42 7.50 6.80 -40.82 -0.28 7.22 16 27 H 0.17 1.44 8.06 -52.48 -0.42 1.01 16 28 H 0.15 1.88 6.72 -52.49 -0.35 1.53 16 29 H 0.05 0.65 7.61 -51.93 -0.40 0.26 16 30 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 0.88 5.70 -51.93 -0.30 0.58 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -31.43 298.79 -6.26 -37.69 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.78 Total: 3.33 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -1.80 Total: 9.79 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.29 Total: -57.02 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.43 -6.26 -37.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234503301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.631 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds