Wall clock time and date at job start Mon Mar 30 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38379 * 120.00170 * 2 1 4 4 N 1.32396 * 119.79893 * 354.68638 * 3 2 1 5 5 C 1.31870 * 121.80334 * 180.02562 * 4 3 2 6 6 C 1.38563 * 121.18496 * 359.97438 * 5 4 3 7 7 F 1.35102 * 120.26990 * 180.02562 * 6 5 4 8 8 C 1.38505 * 119.45832 * 0.02562 * 6 5 4 9 9 C 1.39999 * 118.34585 * 0.02562 * 8 6 5 10 10 C 1.47425 * 120.59870 * 180.02562 * 9 8 6 11 11 O 1.21603 * 120.00276 * 130.28155 * 10 9 8 12 12 N 1.34777 * 119.99920 * 310.29136 * 10 9 8 13 13 C 1.46498 * 119.99871 * 4.45516 * 12 10 9 14 14 C 1.46501 * 120.00154 * 184.46258 * 12 10 9 15 15 C 1.50703 * 109.47215 * 89.99190 * 14 12 10 16 16 H 1.08002 * 119.99678 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00035 * 179.97438 * 15 14 12 18 18 N 1.31512 * 119.99858 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46939 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47034 * 120.00399 * 19 17 15 22 22 H 1.48503 * 109.46850 * 240.00331 * 19 17 15 23 23 H 1.09001 * 109.47310 * 300.00129 * 1 2 3 24 24 H 1.09004 * 109.47090 * 60.00038 * 1 2 3 25 25 H 1.08997 * 109.47320 * 180.02562 * 1 2 3 26 26 H 0.97003 * 119.99814 * 179.97438 * 2 1 3 27 27 H 1.08003 * 119.40577 * 180.27359 * 5 4 3 28 28 H 1.08001 * 120.82583 * 179.97438 * 8 6 5 29 29 H 1.08996 * 109.47373 * 93.08373 * 13 12 10 30 30 H 1.09002 * 109.47270 * 213.08462 * 13 12 10 31 31 H 1.09003 * 109.47676 * 333.08304 * 13 12 10 32 32 H 1.08999 * 109.46935 * 209.99153 * 14 12 10 33 33 H 1.08999 * 109.46923 * 329.99211 * 14 12 10 34 34 H 0.97000 * 120.00222 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1569 1.1984 0.0000 4 7 1.4952 2.3402 -0.1064 5 6 2.1145 3.5044 -0.1112 6 6 3.4936 3.5840 -0.0038 7 9 4.1090 4.7867 -0.0102 8 6 4.2362 2.4204 0.1101 9 6 3.5573 1.1960 0.1118 10 6 4.2983 -0.0728 0.2310 11 8 3.9529 -0.9042 1.0485 12 7 5.3588 -0.3113 -0.5659 13 6 5.8350 0.7280 -1.4819 14 6 6.0351 -1.6099 -0.5162 15 6 5.3971 -2.5469 -1.5093 16 1 4.5708 -2.2087 -2.1170 17 6 5.8690 -3.8355 -1.6428 18 7 6.8755 -4.2471 -0.9031 19 14 5.0787 -4.9967 -2.8742 20 1 3.9744 -4.2957 -3.5773 21 1 6.0953 -5.4354 -3.8637 22 1 4.5386 -6.1818 -2.1608 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.9500 -0.8401 0.0004 27 1 1.5358 4.4125 -0.1955 28 1 5.3123 2.4566 0.1947 29 1 6.6211 1.3071 -0.9974 30 1 6.2305 0.2630 -2.3850 31 1 5.0079 1.3874 -1.7451 32 1 7.0887 -1.4805 -0.7638 33 1 5.9461 -2.0277 0.4866 34 1 7.2073 -5.1537 -0.9967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234503301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:11 Heat of formation + Delta-G solvation = -54.062156 kcal Electronic energy + Delta-G solvation = -20306.823503 eV Core-core repulsion = 16960.774864 eV Total energy + Delta-G solvation = -3346.048639 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.75942 -41.82173 -39.95373 -37.04216 -36.35569 -34.88660 -33.59739 -31.08213 -29.77460 -27.63010 -27.08810 -26.08731 -24.31789 -23.37175 -20.84175 -19.21769 -18.72285 -18.57424 -18.25386 -17.47070 -16.99141 -16.69458 -16.17864 -16.06318 -15.95088 -15.44633 -15.20588 -14.59964 -14.53935 -14.23590 -13.86373 -13.77601 -13.55691 -13.47810 -13.11557 -12.96078 -12.84631 -12.59498 -12.24018 -11.72275 -11.35821 -11.18675 -10.92373 -10.65784 -10.47660 -9.53929 -8.72867 -8.24260 -6.39242 -0.28133 0.12786 1.37073 1.38370 1.50055 1.65616 2.12668 2.21731 2.39862 2.61487 3.05890 3.13049 3.35089 3.57935 3.70144 4.03227 4.21043 4.31119 4.42559 4.59011 4.63966 4.66976 4.75526 4.86911 4.90476 4.97701 5.20658 5.43788 5.50320 5.76629 6.01285 6.02378 6.12705 6.58356 6.69754 6.90871 7.18573 7.35065 8.83264 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.005759 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.925634 B = 4860.955875 C = 5616.688005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.719 5.719 3 C 0.425 3.575 4 N -0.525 5.525 5 C 0.160 3.840 6 C -0.024 4.024 7 F -0.131 7.131 8 C -0.028 4.028 9 C -0.238 4.238 10 C 0.556 3.444 11 O -0.584 6.584 12 N -0.596 5.596 13 C 0.074 3.926 14 C 0.258 3.742 15 C -0.543 4.543 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.927 5.927 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.271 1.271 22 H -0.280 1.280 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.411 0.589 27 H 0.209 0.791 28 H 0.163 0.837 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.006 0.994 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 15.852 -1.548 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.349 5.349 3 C 0.187 3.813 4 N -0.242 5.242 5 C -0.002 4.002 6 C -0.048 4.048 7 F -0.110 7.110 8 C -0.055 4.055 9 C -0.249 4.249 10 C 0.344 3.656 11 O -0.466 6.466 12 N -0.325 5.325 13 C -0.068 4.068 14 C 0.137 3.863 15 C -0.581 4.581 16 H 0.073 0.927 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.206 1.206 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.248 0.752 27 H 0.225 0.775 28 H 0.180 0.820 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.024 0.976 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.236 15.210 -1.190 18.372 hybrid contribution 1.287 -1.153 -0.270 1.749 sum -8.949 14.057 -1.460 16.728 Atomic orbital electron populations 1.21686 0.77128 1.03360 1.02365 1.44723 1.08339 1.04727 1.77083 1.18356 0.86555 0.87642 0.88788 1.67456 1.38489 0.96683 1.21577 1.23305 0.90278 0.96354 0.90258 1.18120 0.92290 0.80811 1.13620 1.91508 1.82982 1.41614 1.94874 1.21705 1.01913 0.89309 0.92524 1.19938 0.93321 0.94009 1.17667 1.18283 0.80448 0.86162 0.80714 1.90727 1.68489 1.49272 1.38077 1.48080 1.30063 1.16063 1.38311 1.22085 1.00440 0.90490 0.93789 1.18869 0.91958 0.79253 0.96234 1.21675 1.17304 0.97625 1.21518 0.92747 1.25824 0.95440 0.99591 0.98011 1.70051 1.26727 1.18786 1.41049 0.85369 0.78579 0.78328 0.78539 1.19094 1.19668 1.20612 0.92050 0.91527 0.89272 0.75159 0.77466 0.81992 0.90472 0.91022 0.89960 0.95420 0.97627 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.22 10.72 127.77 1.37 3.59 16 2 N -0.72 -22.62 5.67 -365.89 -2.08 -24.69 16 3 C 0.42 13.37 7.47 133.61 1.00 14.37 16 4 N -0.52 -13.72 9.55 -192.31 -1.84 -15.56 16 5 C 0.16 3.26 11.15 84.76 0.95 4.20 16 6 C -0.02 -0.53 7.32 22.41 0.16 -0.37 16 7 F -0.13 -2.72 17.28 44.97 0.78 -1.94 16 8 C -0.03 -0.73 7.74 22.76 0.18 -0.55 16 9 C -0.24 -7.90 4.89 -19.88 -0.10 -7.99 16 10 C 0.56 23.55 6.62 86.66 0.57 24.13 16 11 O -0.58 -29.56 15.23 -4.04 -0.06 -29.62 16 12 N -0.60 -25.27 2.86 -855.05 -2.44 -27.71 16 13 C 0.07 2.29 9.13 127.77 1.17 3.46 16 14 C 0.26 13.63 5.21 85.63 0.45 14.08 16 15 C -0.54 -30.44 9.39 25.60 0.24 -30.20 16 16 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 17 C 0.01 0.60 5.46 84.65 0.46 1.06 16 18 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 19 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.41 15.04 6.80 -92.71 -0.63 14.41 16 27 H 0.21 2.47 8.06 -2.91 -0.02 2.44 16 28 H 0.16 3.70 6.72 -2.91 -0.02 3.68 16 29 H 0.08 1.93 7.61 -2.39 -0.02 1.92 16 30 H 0.07 2.27 8.10 -2.39 -0.02 2.25 16 31 H 0.08 2.20 5.70 -2.39 -0.01 2.19 16 32 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.01 0.34 7.36 -2.39 -0.02 0.32 16 34 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -69.92 298.79 3.62 -66.29 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.51 Total: 16.27 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 6.44 Total: 25.77 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -6.07 Total: -122.59 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.06 Total: -29.62 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.92 3.62 -66.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234503301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.231 kcal (2) G-P(sol) polarization free energy of solvation -69.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds