Wall clock time and date at job start Mon Mar 30 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46948 * 2 1 4 4 C 1.50702 * 109.47207 * 239.99536 * 2 1 3 5 5 H 1.08003 * 119.99935 * 239.99583 * 4 2 1 6 6 C 1.37873 * 119.99904 * 60.00825 * 4 2 1 7 7 N 1.31519 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00204 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47253 * 59.98957 * 8 6 4 10 10 H 1.48500 * 109.47293 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46784 * 299.99445 * 8 6 4 12 12 N 1.46502 * 109.46812 * 119.99794 * 2 1 3 13 13 C 1.46504 * 120.00163 * 60.00351 * 12 2 1 14 14 C 1.34780 * 119.99712 * 239.99949 * 12 2 1 15 15 O 1.21595 * 120.00500 * 4.69567 * 14 12 2 16 16 C 1.47436 * 119.99697 * 184.69223 * 14 12 2 17 17 C 1.40000 * 120.59501 * 310.23300 * 16 14 12 18 18 C 1.38502 * 118.34157 * 179.78177 * 17 16 14 19 19 F 1.35106 * 120.27000 * 180.23667 * 18 17 16 20 20 C 1.38563 * 119.45979 * 0.49426 * 18 17 16 21 21 N 1.31865 * 121.18417 * 359.74753 * 20 18 17 22 22 C 1.32399 * 121.80378 * 359.97438 * 21 20 18 23 23 N 1.38377 * 119.79813 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.46889 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47404 * 300.00218 * 1 2 3 26 26 H 1.09002 * 109.46476 * 60.00424 * 1 2 3 27 27 H 0.97001 * 119.99782 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.46625 * 264.91245 * 13 12 2 29 29 H 1.08998 * 109.46865 * 144.91267 * 13 12 2 30 30 H 1.08994 * 109.46914 * 24.90933 * 13 12 2 31 31 H 1.08001 * 120.82693 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.40855 * 179.71677 * 20 18 17 33 33 H 0.97004 * 119.99916 * 174.64631 * 23 22 21 34 34 H 0.96997 * 120.00483 * 354.64434 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.8260 -2.5204 -4.0076 10 1 1.8262 -0.4207 -5.2204 11 1 3.8066 -1.1211 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0168 1.1506 1.9361 16 6 3.3696 -0.7571 3.2326 17 6 2.5624 -1.5600 4.0475 18 6 3.1535 -2.2205 5.1118 19 9 2.4121 -3.0092 5.9203 20 6 4.5103 -2.0616 5.3438 21 7 5.2509 -1.2962 4.5663 22 6 4.7375 -0.6471 3.5328 23 7 5.5530 0.1455 2.7445 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.7085 1.1608 -3.4845 28 1 0.7886 -2.1447 2.0749 29 1 2.4999 -2.6044 1.9063 30 1 1.4414 -2.5738 0.4756 31 1 1.5061 -1.6648 3.8487 32 1 4.9694 -2.5733 6.1767 33 1 5.1980 0.5599 1.9425 34 1 6.4797 0.2867 2.9938 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235411340.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:20 Heat of formation + Delta-G solvation = -38.391846 kcal Electronic energy + Delta-G solvation = -20453.137520 eV Core-core repulsion = 17107.768396 eV Total energy + Delta-G solvation = -3345.369123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.77543 -40.55054 -38.58272 -35.61436 -34.45324 -33.31687 -32.20495 -29.57983 -28.70797 -26.37946 -25.30478 -24.63767 -23.01601 -21.32989 -19.02615 -18.01827 -17.64399 -17.18832 -16.46938 -16.19147 -15.60738 -15.38495 -15.32237 -14.50211 -14.37308 -14.02061 -13.74912 -13.57171 -13.09956 -12.65383 -12.49629 -12.22722 -11.74940 -11.55605 -11.12988 -10.92745 -10.81190 -10.66117 -10.35071 -10.25406 -10.05683 -9.79779 -9.29134 -9.06543 -8.50638 -7.83930 -7.68601 -6.15146 -4.24121 0.82418 1.21071 3.09498 3.22814 3.28552 3.30060 3.45572 3.65777 3.86409 4.22880 4.32400 4.49883 4.70627 4.81424 5.15981 5.26256 5.39245 5.69009 5.72443 5.79004 5.91942 6.29402 6.48371 6.68188 6.75583 6.97292 7.16366 7.30008 7.38372 7.41901 7.62423 7.91692 8.06364 8.10743 8.37561 8.68937 8.87126 9.42713 10.90000 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.005405 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.937827 B = 5179.578696 C = 5459.386207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.579 5.579 13 C 0.079 3.921 14 C 0.554 3.446 15 O -0.547 6.547 16 C -0.212 4.212 17 C -0.035 4.035 18 C -0.029 4.029 19 F -0.137 7.137 20 C 0.143 3.857 21 N -0.527 5.527 22 C 0.439 3.561 23 N -0.828 5.828 24 H 0.030 0.970 25 H 0.012 0.988 26 H 0.094 0.906 27 H 0.265 0.735 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.168 0.832 33 H 0.422 0.578 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 -6.295 11.825 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.308 5.308 13 C -0.065 4.065 14 C 0.340 3.660 15 O -0.427 6.427 16 C -0.223 4.223 17 C -0.062 4.062 18 C -0.054 4.054 19 F -0.116 7.116 20 C -0.018 4.018 21 N -0.244 5.244 22 C 0.199 3.801 23 N -0.370 5.370 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.169 0.831 32 H 0.185 0.815 33 H 0.256 0.744 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.151 -5.457 11.696 13.897 hybrid contribution -0.579 -0.653 -1.056 1.370 sum 4.572 -6.110 10.640 13.094 Atomic orbital electron populations 1.22091 0.97939 0.99548 1.00971 1.19028 0.91158 0.94497 0.79532 0.91709 1.21257 1.32250 1.13193 0.90191 0.92226 1.24884 0.94842 0.94938 0.98963 1.69869 1.35989 1.22473 1.24011 0.86541 0.79213 0.79616 0.81928 1.20193 1.21106 1.20240 1.48239 1.47856 1.11701 1.23028 1.21775 0.98826 0.83181 1.02693 1.17815 0.79693 0.86582 0.81867 1.90753 1.61579 1.14593 1.75749 1.20303 0.93462 1.06320 1.02231 1.21649 1.01189 0.91717 0.91605 1.18193 0.91150 1.00819 0.95225 1.91483 1.76479 1.72148 1.71539 1.22589 0.88782 0.93491 0.96927 1.67309 1.38038 1.12280 1.06820 1.18163 0.86784 0.87491 0.87681 1.42335 1.13656 1.52406 1.28621 0.95050 0.96878 0.88708 0.92513 0.93681 0.92679 0.89600 0.83149 0.81521 0.74403 0.76612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.31 2.63 -69.08 -0.18 6.13 16 3 H 0.07 1.83 6.91 -51.93 -0.36 1.47 16 4 C -0.53 -13.74 7.96 -34.44 -0.27 -14.01 16 5 H 0.06 1.52 7.42 -52.48 -0.39 1.13 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.27 11.32 55.43 0.63 -23.64 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.58 -11.89 2.75 -176.53 -0.49 -12.37 16 13 C 0.08 1.31 8.04 59.85 0.48 1.79 16 14 C 0.55 11.16 6.63 -12.51 -0.08 11.07 16 15 O -0.55 -12.65 15.00 5.28 0.08 -12.57 16 16 C -0.21 -3.50 4.89 -104.65 -0.51 -4.01 16 17 C -0.03 -0.49 7.91 -38.82 -0.31 -0.80 16 18 C -0.03 -0.37 7.32 -39.36 -0.29 -0.66 16 19 F -0.14 -1.70 17.28 2.25 0.04 -1.66 16 20 C 0.14 1.71 11.15 -17.42 -0.19 1.52 16 21 N -0.53 -7.36 10.38 -12.14 -0.13 -7.49 16 22 C 0.44 6.80 7.75 -155.12 -1.20 5.60 16 23 N -0.83 -11.74 8.88 31.27 0.28 -11.47 16 24 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.04 0.64 7.13 -51.93 -0.37 0.27 16 29 H 0.05 0.81 6.29 -51.93 -0.33 0.49 16 30 H 0.09 1.50 7.10 -51.93 -0.37 1.13 16 31 H 0.15 1.93 6.46 -52.49 -0.34 1.59 16 32 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.42 6.68 6.80 -40.82 -0.28 6.40 16 34 H 0.40 4.59 8.95 -40.82 -0.37 4.22 16 LS Contribution 290.32 15.07 4.38 4.38 Total: -1.00 -29.35 290.32 -6.04 -35.40 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -3.49 Total: 8.83 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -2.32 Total: 5.22 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.29 Total: -54.97 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.35 -6.04 -35.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235411340.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.992 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds