Wall clock time and date at job start Mon Mar 30 2020 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46948 * 2 1 4 4 C 1.50702 * 109.47207 * 239.99536 * 2 1 3 5 5 H 1.08003 * 119.99935 * 239.99583 * 4 2 1 6 6 C 1.37873 * 119.99904 * 60.00825 * 4 2 1 7 7 N 1.31519 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00204 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47253 * 59.98957 * 8 6 4 10 10 H 1.48500 * 109.47293 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46784 * 299.99445 * 8 6 4 12 12 N 1.46502 * 109.46812 * 119.99794 * 2 1 3 13 13 C 1.46504 * 120.00163 * 60.00351 * 12 2 1 14 14 C 1.34780 * 119.99712 * 239.99949 * 12 2 1 15 15 O 1.21595 * 120.00500 * 4.69567 * 14 12 2 16 16 C 1.47436 * 119.99697 * 184.69223 * 14 12 2 17 17 C 1.40000 * 120.59501 * 310.23300 * 16 14 12 18 18 C 1.38502 * 118.34157 * 179.78177 * 17 16 14 19 19 F 1.35106 * 120.27000 * 180.23667 * 18 17 16 20 20 C 1.38563 * 119.45979 * 0.49426 * 18 17 16 21 21 N 1.31865 * 121.18417 * 359.74753 * 20 18 17 22 22 C 1.32399 * 121.80378 * 359.97438 * 21 20 18 23 23 N 1.38377 * 119.79813 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.46889 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47404 * 300.00218 * 1 2 3 26 26 H 1.09002 * 109.46476 * 60.00424 * 1 2 3 27 27 H 0.97001 * 119.99782 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.46625 * 264.91245 * 13 12 2 29 29 H 1.08998 * 109.46865 * 144.91267 * 13 12 2 30 30 H 1.08994 * 109.46914 * 24.90933 * 13 12 2 31 31 H 1.08001 * 120.82693 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.40855 * 179.71677 * 20 18 17 33 33 H 0.97004 * 119.99916 * 174.64631 * 23 22 21 34 34 H 0.96997 * 120.00483 * 354.64434 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.8260 -2.5204 -4.0076 10 1 1.8262 -0.4207 -5.2204 11 1 3.8066 -1.1211 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0168 1.1506 1.9361 16 6 3.3696 -0.7571 3.2326 17 6 2.5624 -1.5600 4.0475 18 6 3.1535 -2.2205 5.1118 19 9 2.4121 -3.0092 5.9203 20 6 4.5103 -2.0616 5.3438 21 7 5.2509 -1.2962 4.5663 22 6 4.7375 -0.6471 3.5328 23 7 5.5530 0.1455 2.7445 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.7085 1.1608 -3.4845 28 1 0.7886 -2.1447 2.0749 29 1 2.4999 -2.6044 1.9063 30 1 1.4414 -2.5738 0.4756 31 1 1.5061 -1.6648 3.8487 32 1 4.9694 -2.5733 6.1767 33 1 5.1980 0.5599 1.9425 34 1 6.4797 0.2867 2.9938 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235411340.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:19 Heat of formation + Delta-G solvation = -57.878770 kcal Electronic energy + Delta-G solvation = -20453.982536 eV Core-core repulsion = 17107.768396 eV Total energy + Delta-G solvation = -3346.214140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.76039 -41.80076 -40.02479 -37.27291 -35.65195 -34.98276 -33.62805 -31.25130 -29.93146 -27.79992 -27.30557 -25.88651 -24.20327 -22.90993 -20.57762 -19.15378 -18.77480 -18.58854 -18.23014 -17.65750 -16.94569 -16.66226 -16.47558 -16.14411 -15.88073 -15.16716 -14.92239 -14.74485 -14.67538 -14.31832 -13.77230 -13.56546 -13.53532 -13.07636 -12.91937 -12.75177 -12.67315 -12.20650 -12.13644 -11.73325 -11.38394 -11.20379 -10.94615 -10.57948 -10.43744 -9.43505 -8.86569 -8.15319 -6.31858 -0.28276 0.13347 1.42754 1.43916 1.51492 1.65447 2.19120 2.38420 2.46226 2.62156 3.13148 3.13601 3.40618 3.58940 3.73554 4.18436 4.21606 4.38755 4.59519 4.67263 4.75578 4.78319 4.90045 4.97333 5.05215 5.45174 5.47867 5.54516 5.64820 5.97567 6.02263 6.14212 6.37162 6.68968 6.74607 6.98943 7.20489 7.41458 8.88847 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.005405 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.937827 B = 5179.578696 C = 5459.386207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.263 3.737 3 H 0.016 0.984 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.586 5.586 13 C 0.078 3.922 14 C 0.553 3.447 15 O -0.589 6.589 16 C -0.237 4.237 17 C -0.028 4.028 18 C -0.024 4.024 19 F -0.131 7.131 20 C 0.160 3.840 21 N -0.530 5.530 22 C 0.431 3.569 23 N -0.826 5.826 24 H 0.047 0.953 25 H 0.020 0.980 26 H 0.069 0.931 27 H 0.265 0.735 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.209 0.791 33 H 0.413 0.587 34 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -8.618 13.233 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.034 0.966 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.189 1.189 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.064 4.064 14 C 0.341 3.659 15 O -0.472 6.472 16 C -0.248 4.248 17 C -0.055 4.055 18 C -0.048 4.048 19 F -0.110 7.110 20 C -0.002 4.002 21 N -0.247 5.247 22 C 0.191 3.809 23 N -0.368 5.368 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.179 0.821 32 H 0.225 0.775 33 H 0.245 0.755 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.724 -7.814 13.130 16.317 hybrid contribution -0.726 0.046 -1.367 1.548 sum 4.998 -7.768 11.764 14.957 Atomic orbital electron populations 1.21892 0.97057 1.00209 1.00078 1.18622 0.91767 0.92414 0.81096 0.96575 1.21502 1.32151 1.13169 0.90964 0.92078 1.25681 0.95005 0.95572 1.01857 1.70010 1.37036 1.23762 1.24542 0.85542 0.78449 0.78930 0.78285 1.18941 1.20994 1.20194 1.48171 1.48125 1.13151 1.21998 1.21962 1.00737 0.80805 1.02923 1.18318 0.78860 0.86225 0.82454 1.90716 1.62827 1.16632 1.77006 1.19929 0.94220 1.08544 1.02150 1.21729 1.01499 0.90861 0.91397 1.18132 0.91423 1.00501 0.94743 1.91510 1.76415 1.71871 1.71216 1.23278 0.88502 0.91723 0.96683 1.67456 1.38116 1.12609 1.06551 1.18315 0.86618 0.87791 0.88197 1.42331 1.14263 1.52044 1.28150 0.93426 0.96063 0.91249 0.92582 0.91012 0.90667 0.90593 0.82126 0.77482 0.75493 0.75253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.97 71.98 0.65 -5.65 16 2 C 0.26 13.23 2.63 44.25 0.12 13.35 16 3 H 0.02 0.97 6.91 -2.39 -0.02 0.96 16 4 C -0.54 -28.32 7.96 25.60 0.20 -28.12 16 5 H 0.06 3.12 7.42 -2.91 -0.02 3.09 16 6 C 0.02 1.01 5.30 84.65 0.45 1.45 16 7 N -0.91 -51.36 11.32 21.45 0.24 -51.11 16 8 Si 0.96 41.89 29.54 68.60 2.03 43.92 16 9 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 N -0.59 -24.17 2.75 -830.68 -2.29 -26.46 16 13 C 0.08 2.46 8.04 127.77 1.03 3.49 16 14 C 0.55 22.59 6.63 86.67 0.57 23.17 16 15 O -0.59 -28.47 15.00 -4.01 -0.06 -28.53 16 16 C -0.24 -7.59 4.89 -19.88 -0.10 -7.69 16 17 C -0.03 -0.73 7.91 22.76 0.18 -0.55 16 18 C -0.02 -0.52 7.32 22.41 0.16 -0.35 16 19 F -0.13 -2.73 17.28 44.97 0.78 -1.95 16 20 C 0.16 3.19 11.15 84.77 0.95 4.14 16 21 N -0.53 -13.38 10.38 -192.32 -2.00 -15.38 16 22 C 0.43 12.82 7.75 133.61 1.03 13.85 16 23 N -0.83 -23.34 8.88 -54.97 -0.49 -23.83 16 24 H 0.05 2.02 7.67 -2.39 -0.02 2.01 16 25 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 27 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.07 1.87 7.13 -2.39 -0.02 1.85 16 29 H 0.07 2.06 6.29 -2.39 -0.02 2.05 16 30 H 0.08 2.55 7.10 -2.39 -0.02 2.53 16 31 H 0.16 3.70 6.46 -2.91 -0.02 3.68 16 32 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.41 13.50 6.80 -92.70 -0.63 12.87 16 34 H 0.42 9.24 8.95 -92.71 -0.83 8.41 16 Total: -1.00 -64.66 290.32 3.17 -61.50 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.29 Total: 24.75 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 5.24 Total: 17.10 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.53 Total: -116.78 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.06 Total: -28.53 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.95 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -64.66 3.17 -61.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235411340.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.618 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds