Wall clock time and date at job start Mon Mar 30 2020 04:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.34942 * 126.13066 * 2 1 4 4 H 0.97011 * 126.03611 * 0.02562 * 3 2 1 5 5 N 1.40086 * 107.92869 * 180.24116 * 3 2 1 6 6 C 1.30839 * 108.20072 * 359.75907 * 5 3 2 7 7 C 1.35318 * 126.12325 * 179.82467 * 2 1 3 8 8 C 1.50698 * 126.04056 * 0.02562 * 7 2 1 9 9 N 1.46896 * 109.47516 * 79.71413 * 8 7 2 10 10 C 1.46467 * 111.00170 * 68.53298 * 9 8 7 11 11 C 1.53249 * 109.86255 * 197.76890 * 10 9 8 12 12 S 1.81903 * 108.50473 * 297.99661 * 11 10 9 13 13 C 1.81900 * 101.91279 * 51.30268 * 12 11 10 14 14 C 1.46462 * 111.00321 * 194.51626 * 9 8 7 15 15 H 1.09007 * 109.40834 * 282.35270 * 14 9 8 16 16 C 1.50697 * 109.40689 * 42.11238 * 14 9 8 17 17 H 1.07999 * 120.00411 * 54.90203 * 16 14 9 18 18 C 1.37885 * 120.00019 * 234.90363 * 16 14 9 19 19 N 1.31512 * 120.00021 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99704 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47089 * 60.00255 * 20 18 16 22 22 H 1.48502 * 109.46880 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47201 * 299.99903 * 20 18 16 24 24 H 1.08998 * 109.46491 * 270.17663 * 1 2 3 25 25 H 1.08999 * 109.46634 * 30.17343 * 1 2 3 26 26 H 1.08995 * 109.47295 * 150.17466 * 1 2 3 27 27 H 1.07995 * 125.89492 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.46937 * 319.71177 * 8 7 2 29 29 H 1.09004 * 109.46757 * 199.71263 * 8 7 2 30 30 H 1.09006 * 109.40415 * 317.88432 * 10 9 8 31 31 H 1.09002 * 109.40826 * 77.64641 * 10 9 8 32 32 H 1.09006 * 109.63166 * 57.70232 * 11 10 9 33 33 H 1.09000 * 109.62917 * 178.28995 * 11 10 9 34 34 H 1.09004 * 109.63256 * 68.40118 * 13 12 11 35 35 H 1.09002 * 109.63053 * 188.98762 * 13 12 11 36 36 H 0.96996 * 119.99767 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3027 1.0899 0.0000 4 1 2.0057 2.0134 0.0004 5 7 3.6335 0.6523 -0.0056 6 6 3.6335 -0.6561 -0.0036 7 6 2.3048 -1.0930 0.0033 8 6 1.8432 -2.5276 0.0072 9 7 1.4583 -2.9218 -1.3545 10 6 2.6289 -2.9891 -2.2322 11 6 2.1830 -2.9604 -3.6981 12 16 1.1524 -4.4250 -4.0168 13 6 -0.0628 -4.3301 -2.6667 14 6 0.6924 -4.1702 -1.3428 15 1 1.3728 -5.0114 -1.2101 16 6 -0.2941 -4.1417 -0.2040 17 1 -0.9962 -3.3256 -0.1178 18 6 -0.3004 -5.1577 0.7282 19 7 0.5542 -6.1518 0.6232 20 14 -1.5227 -5.1220 2.1404 21 1 -2.9053 -5.1238 1.5984 22 1 -1.3247 -6.3189 2.9968 23 1 -1.3095 -3.8947 2.9488 24 1 -0.3632 0.0032 1.0277 25 1 -0.3632 0.8884 -0.5165 26 1 -0.3633 -0.8915 -0.5111 27 1 4.5083 -1.2893 -0.0064 28 1 0.9855 -2.6314 0.6717 29 1 2.6528 -3.1688 0.3559 30 1 3.2791 -2.1367 -2.0347 31 1 3.1749 -3.9123 -2.0378 32 1 1.6035 -2.0567 -3.8870 33 1 3.0582 -2.9800 -4.3475 34 1 -0.7161 -3.4714 -2.8216 35 1 -0.6553 -5.2447 -2.6422 36 1 0.5500 -6.8663 1.2791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259632772.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:39 Heat of formation + Delta-G solvation = 73.230762 kcal Electronic energy + Delta-G solvation = -18980.344389 eV Core-core repulsion = 16206.028762 eV Total energy + Delta-G solvation = -2774.315628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90313 -37.27007 -33.02774 -32.25138 -31.67985 -30.39762 -28.87635 -26.66864 -25.36530 -23.69477 -22.18166 -21.35698 -19.69020 -18.69403 -16.84268 -16.79107 -15.54063 -15.04376 -14.63125 -14.32911 -13.96493 -13.92437 -13.35141 -13.06220 -12.88122 -12.61763 -12.45002 -12.22199 -11.92302 -11.49592 -11.34306 -11.06828 -11.06014 -10.92274 -10.71363 -10.53095 -10.02945 -9.75721 -9.38089 -9.13179 -8.84394 -8.63654 -7.93901 -7.20495 -6.88557 -6.19497 -4.25494 2.21371 2.63976 3.14196 3.18866 3.21194 3.27879 3.27997 3.42832 4.27430 4.92612 5.12238 5.17958 5.23230 5.44347 5.62167 5.76284 5.84384 5.90492 5.95330 6.11768 6.24945 6.27826 6.39666 6.44992 6.48580 6.53025 6.74209 6.89288 6.99957 7.26775 7.52794 7.60163 7.69636 7.82997 8.00726 8.24918 8.53975 8.89428 9.38093 10.85923 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.009326 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.358858 B = 3001.560729 C = 4384.794177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.101 3.899 3 N -0.486 5.486 4 H 0.431 0.569 5 N -0.311 5.311 6 C 0.051 3.949 7 C -0.215 4.215 8 C 0.147 3.853 9 N -0.545 5.545 10 C 0.056 3.944 11 C -0.058 4.058 12 S -0.339 6.339 13 C -0.033 4.033 14 C 0.195 3.805 15 H 0.059 0.941 16 C -0.508 4.508 17 H 0.062 0.938 18 C 0.070 3.930 19 N -0.882 5.882 20 Si 0.893 3.107 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.175 0.825 28 H 0.105 0.895 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 9.447 -1.540 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 N -0.195 5.195 4 H 0.273 0.727 5 N -0.133 5.133 6 C -0.135 4.135 7 C -0.226 4.226 8 C 0.019 3.981 9 N -0.271 5.271 10 C -0.074 4.074 11 C -0.207 4.207 12 S -0.113 6.113 13 C -0.181 4.181 14 C 0.089 3.911 15 H 0.076 0.924 16 C -0.549 4.549 17 H 0.080 0.920 18 C -0.135 4.135 19 N -0.519 5.519 20 Si 0.721 3.279 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.192 0.808 28 H 0.123 0.877 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.839 9.842 -2.513 10.323 hybrid contribution -0.767 -0.032 1.883 2.034 sum 1.072 9.810 -0.629 9.888 Atomic orbital electron populations 1.20486 0.87270 1.04344 1.02952 1.20882 0.94488 0.87057 1.00326 1.46202 1.04286 1.07902 1.61153 0.72686 1.77203 0.96788 1.13216 1.26118 1.23773 0.98064 0.91950 0.99743 1.20200 0.91449 0.96859 1.14088 1.20120 1.00092 0.86779 0.91138 1.61388 1.20395 1.36357 1.08965 1.22096 0.93617 1.00190 0.91457 1.23285 1.00277 0.97519 0.99591 1.86497 1.40340 1.38819 1.45614 1.23922 0.96860 1.03882 0.93439 1.19625 0.93254 0.87672 0.90596 0.92354 1.20864 1.17714 1.07751 1.08533 0.91969 1.25038 0.95346 0.95274 0.97816 1.69893 1.35431 1.10602 1.35933 0.86630 0.81639 0.77689 0.81986 1.19993 1.21251 1.19916 0.90801 0.92205 0.87707 0.80797 0.87661 0.95467 0.91425 0.94688 0.90377 0.89380 0.91290 0.88910 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 10.21 36.01 0.37 -0.85 16 2 C 0.10 1.54 7.21 -82.26 -0.59 0.94 16 3 N -0.49 -6.78 7.36 33.48 0.25 -6.53 16 4 H 0.43 4.51 8.96 -182.60 -1.64 2.87 16 5 N -0.31 -4.98 12.70 30.62 0.39 -4.59 16 6 C 0.05 0.82 10.91 -17.36 -0.19 0.63 16 7 C -0.21 -3.66 4.81 -105.05 -0.51 -4.17 16 8 C 0.15 2.87 4.68 -4.98 -0.02 2.85 16 9 N -0.55 -10.88 4.28 -229.87 -0.98 -11.87 16 10 C 0.06 1.04 5.27 -3.93 -0.02 1.02 16 11 C -0.06 -1.00 6.69 37.29 0.25 -0.75 16 12 S -0.34 -6.72 22.40 -107.50 -2.41 -9.13 16 13 C -0.03 -0.70 5.95 37.28 0.22 -0.48 16 14 C 0.20 4.46 2.21 -68.98 -0.15 4.30 16 15 H 0.06 1.56 6.69 -51.92 -0.35 1.21 16 16 C -0.51 -12.21 6.02 -34.44 -0.21 -12.42 16 17 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 18 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.88 -23.59 12.61 55.43 0.70 -22.89 16 20 Si 0.89 19.49 29.54 -169.99 -5.02 14.47 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.10 1.63 7.88 -51.93 -0.41 1.22 16 27 H 0.18 2.43 8.06 -52.49 -0.42 2.00 16 28 H 0.11 2.26 6.04 -51.93 -0.31 1.95 16 29 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.07 1.16 6.15 -51.93 -0.32 0.84 16 31 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 36 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 304.37 15.07 4.59 4.59 Total: -1.00 -27.09 304.37 -9.80 -36.90 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.36 Total: 6.31 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.95 Total: -7.26 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.35 Total: -45.88 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: -6.72 SS G_CDS: -2.41 Total: -9.13 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.09 -9.80 -36.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259632772.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.129 kcal (2) G-P(sol) polarization free energy of solvation -27.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds