Wall clock time and date at job start Mon Mar 30 2020 04:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.34942 * 126.13066 * 2 1 4 4 H 0.97011 * 126.03611 * 0.02562 * 3 2 1 5 5 N 1.40086 * 107.92869 * 180.24116 * 3 2 1 6 6 C 1.30839 * 108.20072 * 359.75907 * 5 3 2 7 7 C 1.35318 * 126.12325 * 179.82467 * 2 1 3 8 8 C 1.50698 * 126.04056 * 0.02562 * 7 2 1 9 9 N 1.46896 * 109.47516 * 79.71413 * 8 7 2 10 10 C 1.46467 * 111.00170 * 68.53298 * 9 8 7 11 11 C 1.53249 * 109.86255 * 197.76890 * 10 9 8 12 12 S 1.81903 * 108.50473 * 297.99661 * 11 10 9 13 13 C 1.81900 * 101.91279 * 51.30268 * 12 11 10 14 14 C 1.46462 * 111.00321 * 194.51626 * 9 8 7 15 15 H 1.09007 * 109.40834 * 282.35270 * 14 9 8 16 16 C 1.50697 * 109.40689 * 42.11238 * 14 9 8 17 17 H 1.07999 * 120.00411 * 54.90203 * 16 14 9 18 18 C 1.37885 * 120.00019 * 234.90363 * 16 14 9 19 19 N 1.31512 * 120.00021 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99704 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47089 * 60.00255 * 20 18 16 22 22 H 1.48502 * 109.46880 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47201 * 299.99903 * 20 18 16 24 24 H 1.08998 * 109.46491 * 270.17663 * 1 2 3 25 25 H 1.08999 * 109.46634 * 30.17343 * 1 2 3 26 26 H 1.08995 * 109.47295 * 150.17466 * 1 2 3 27 27 H 1.07995 * 125.89492 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.46937 * 319.71177 * 8 7 2 29 29 H 1.09004 * 109.46757 * 199.71263 * 8 7 2 30 30 H 1.09006 * 109.40415 * 317.88432 * 10 9 8 31 31 H 1.09002 * 109.40826 * 77.64641 * 10 9 8 32 32 H 1.09006 * 109.63166 * 57.70232 * 11 10 9 33 33 H 1.09000 * 109.62917 * 178.28995 * 11 10 9 34 34 H 1.09004 * 109.63256 * 68.40118 * 13 12 11 35 35 H 1.09002 * 109.63053 * 188.98762 * 13 12 11 36 36 H 0.96996 * 119.99767 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3027 1.0899 0.0000 4 1 2.0057 2.0134 0.0004 5 7 3.6335 0.6523 -0.0056 6 6 3.6335 -0.6561 -0.0036 7 6 2.3048 -1.0930 0.0033 8 6 1.8432 -2.5276 0.0072 9 7 1.4583 -2.9218 -1.3545 10 6 2.6289 -2.9891 -2.2322 11 6 2.1830 -2.9604 -3.6981 12 16 1.1524 -4.4250 -4.0168 13 6 -0.0628 -4.3301 -2.6667 14 6 0.6924 -4.1702 -1.3428 15 1 1.3728 -5.0114 -1.2101 16 6 -0.2941 -4.1417 -0.2040 17 1 -0.9962 -3.3256 -0.1178 18 6 -0.3004 -5.1577 0.7282 19 7 0.5542 -6.1518 0.6232 20 14 -1.5227 -5.1220 2.1404 21 1 -2.9053 -5.1238 1.5984 22 1 -1.3247 -6.3189 2.9968 23 1 -1.3095 -3.8947 2.9488 24 1 -0.3632 0.0032 1.0277 25 1 -0.3632 0.8884 -0.5165 26 1 -0.3633 -0.8915 -0.5111 27 1 4.5083 -1.2893 -0.0064 28 1 0.9855 -2.6314 0.6717 29 1 2.6528 -3.1688 0.3559 30 1 3.2791 -2.1367 -2.0347 31 1 3.1749 -3.9123 -2.0378 32 1 1.6035 -2.0567 -3.8870 33 1 3.0582 -2.9800 -4.3475 34 1 -0.7161 -3.4714 -2.8216 35 1 -0.6553 -5.2447 -2.6422 36 1 0.5500 -6.8663 1.2791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259632772.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:39 Heat of formation + Delta-G solvation = 56.425284 kcal Electronic energy + Delta-G solvation = -18981.073130 eV Core-core repulsion = 16206.028762 eV Total energy + Delta-G solvation = -2775.044368 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.14023 -38.92163 -34.85667 -33.45807 -33.05631 -32.11167 -30.29826 -27.92228 -27.24091 -25.16977 -23.76400 -22.62248 -21.36145 -20.03629 -18.68019 -17.99276 -17.23843 -16.74299 -16.07771 -15.88697 -15.47888 -15.12178 -14.88538 -14.69253 -14.45390 -14.04413 -13.81845 -13.48831 -13.29920 -13.01513 -12.91956 -12.77238 -12.55096 -12.51867 -12.41195 -12.17612 -11.61763 -11.42775 -11.00363 -10.70508 -10.38772 -10.34095 -9.24564 -8.89089 -8.51218 -8.11360 -6.21766 0.99836 1.08007 1.47026 1.48259 1.55087 1.79364 1.85521 2.09195 2.44741 3.13711 3.52120 3.92620 3.99580 4.12856 4.32105 4.36839 4.47146 4.57515 4.62353 4.70620 4.77930 4.82538 4.85792 4.95802 5.03727 5.10402 5.29310 5.44033 5.49988 5.62401 5.74528 5.79812 6.05290 6.48099 6.52676 6.77751 6.84997 6.98621 7.44636 8.94003 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.009326 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.358858 B = 3001.560729 C = 4384.794177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.112 3.888 3 N -0.471 5.471 4 H 0.448 0.552 5 N -0.323 5.323 6 C 0.048 3.952 7 C -0.241 4.241 8 C 0.161 3.839 9 N -0.537 5.537 10 C 0.059 3.941 11 C -0.047 4.047 12 S -0.348 6.348 13 C -0.029 4.029 14 C 0.202 3.798 15 H 0.014 0.986 16 C -0.504 4.504 17 H 0.066 0.934 18 C 0.024 3.976 19 N -0.922 5.922 20 Si 0.951 3.049 21 H -0.269 1.269 22 H -0.294 1.294 23 H -0.264 1.264 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.188 0.812 28 H 0.083 0.917 29 H 0.003 0.997 30 H 0.086 0.914 31 H 0.015 0.985 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 11.878 -1.874 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.018 4.018 3 N -0.182 5.182 4 H 0.294 0.706 5 N -0.145 5.145 6 C -0.138 4.138 7 C -0.253 4.253 8 C 0.033 3.967 9 N -0.262 5.262 10 C -0.071 4.071 11 C -0.195 4.195 12 S -0.121 6.121 13 C -0.177 4.177 14 C 0.094 3.906 15 H 0.032 0.968 16 C -0.545 4.545 17 H 0.085 0.915 18 C -0.177 4.177 19 N -0.560 5.560 20 Si 0.776 3.224 21 H -0.194 1.194 22 H -0.220 1.220 23 H -0.189 1.189 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.205 0.795 28 H 0.101 0.899 29 H 0.022 0.978 30 H 0.105 0.895 31 H 0.033 0.967 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.480 12.324 -2.853 12.736 hybrid contribution -0.609 -0.711 1.939 2.153 sum 0.872 11.612 -0.913 11.681 Atomic orbital electron populations 1.20506 0.85735 1.04695 1.03820 1.21096 0.95380 0.86839 0.98472 1.46184 1.03488 1.08599 1.59881 0.70620 1.77182 0.97803 1.13013 1.26524 1.23967 0.98153 0.92183 0.99450 1.19971 0.92530 0.95750 1.17025 1.19841 0.98232 0.88362 0.90308 1.61414 1.21037 1.34217 1.09521 1.22110 0.93061 0.99959 0.91962 1.23369 1.00820 0.96293 0.99029 1.86506 1.40500 1.40910 1.44229 1.23652 0.97094 1.03376 0.93598 1.19389 0.92659 0.87320 0.91227 0.96794 1.21087 1.17433 1.07337 1.08618 0.91541 1.25716 0.96838 0.95045 1.00114 1.70043 1.37514 1.11537 1.36946 0.85713 0.79766 0.77570 0.79322 1.19356 1.21960 1.18864 0.89656 0.89062 0.90060 0.79519 0.89863 0.97836 0.89546 0.96690 0.89339 0.86537 0.90492 0.90570 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.11 10.21 71.24 0.73 -1.38 16 2 C 0.11 3.14 7.21 41.41 0.30 3.44 16 3 N -0.47 -11.70 7.36 -48.00 -0.35 -12.05 16 4 H 0.45 7.76 8.96 -213.32 -1.91 5.85 16 5 N -0.32 -9.56 12.70 -57.03 -0.72 -10.28 16 6 C 0.05 1.47 10.91 85.24 0.93 2.40 16 7 C -0.24 -7.93 4.81 -20.14 -0.10 -8.03 16 8 C 0.16 6.36 4.68 85.56 0.40 6.76 16 9 N -0.54 -21.39 4.28 -881.18 -3.77 -25.16 16 10 C 0.06 2.12 5.27 86.47 0.46 2.57 16 11 C -0.05 -1.52 6.69 72.07 0.48 -1.04 16 12 S -0.35 -13.53 22.40 -56.49 -1.27 -14.79 16 13 C -0.03 -1.23 5.95 72.06 0.43 -0.80 16 14 C 0.20 9.42 2.21 44.33 0.10 9.51 16 15 H 0.01 0.79 6.69 -2.38 -0.02 0.77 16 16 C -0.50 -24.63 6.02 25.60 0.15 -24.47 16 17 H 0.07 3.14 7.81 -2.91 -0.02 3.12 16 18 C 0.02 1.20 5.46 84.66 0.46 1.67 16 19 N -0.92 -51.17 12.61 21.45 0.27 -50.90 16 20 Si 0.95 40.34 29.54 68.60 2.03 42.37 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 2.38 7.88 -2.39 -0.02 2.36 16 27 H 0.19 4.98 8.06 -2.91 -0.02 4.95 16 28 H 0.08 3.63 6.04 -2.39 -0.01 3.62 16 29 H 0.00 0.15 8.09 -2.38 -0.02 0.13 16 30 H 0.09 2.81 6.15 -2.38 -0.01 2.80 16 31 H 0.01 0.60 7.92 -2.39 -0.02 0.58 16 32 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 33 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -58.85 304.37 -0.30 -59.15 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -0.83 Total: 21.02 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.34 Total: -9.36 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -4.58 Total: -98.39 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 16 Polarization: -13.53 SS G_CDS: -1.27 Total: -14.79 kcal Total: -58.85 -0.30 -59.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259632772.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.574 kcal (2) G-P(sol) polarization free energy of solvation -58.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds