Wall clock time and date at job start Mon Mar 30 2020 04:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39875 * 125.89918 * 2 1 4 4 C 1.35312 * 107.91762 * 180.14024 * 3 2 1 5 5 C 1.50701 * 126.12522 * 179.90069 * 4 3 2 6 6 N 1.46890 * 109.47405 * 264.71427 * 5 4 3 7 7 C 1.46471 * 111.00402 * 290.73554 * 6 5 4 8 8 C 1.53251 * 109.86041 * 162.23208 * 7 6 5 9 9 S 1.81900 * 108.50438 * 62.00728 * 8 7 6 10 10 C 1.81899 * 101.91272 * 308.69221 * 9 8 7 11 11 C 1.46466 * 111.00030 * 164.75290 * 6 5 4 12 12 H 1.09001 * 109.34371 * 77.68966 * 11 6 5 13 13 C 1.50697 * 109.41020 * 317.88777 * 11 6 5 14 14 H 1.07997 * 119.99806 * 325.02796 * 13 11 6 15 15 C 1.37880 * 120.00404 * 145.02077 * 13 11 6 16 16 N 1.31516 * 119.99847 * 7.44520 * 15 13 11 17 17 Si 1.86797 * 120.00123 * 187.16435 * 15 13 11 18 18 H 1.48502 * 109.47333 * 180.27770 * 17 15 13 19 19 H 1.48496 * 109.47670 * 300.27979 * 17 15 13 20 20 H 1.48504 * 109.46880 * 60.28140 * 17 15 13 21 21 N 1.34946 * 107.74967 * 359.64003 * 4 3 2 22 22 H 0.97003 * 126.03725 * 180.24897 * 21 4 3 23 23 N 1.30838 * 125.89753 * 179.73619 * 2 1 3 24 24 H 1.08998 * 109.47680 * 270.23682 * 1 2 3 25 25 H 1.09008 * 109.47173 * 30.23792 * 1 2 3 26 26 H 1.09001 * 109.47216 * 150.23587 * 1 2 3 27 27 H 1.08000 * 126.03903 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.47122 * 144.71003 * 5 4 3 29 29 H 1.08998 * 109.47018 * 24.71842 * 5 4 3 30 30 H 1.09003 * 109.39887 * 42.11243 * 7 6 5 31 31 H 1.08996 * 109.33947 * 282.31226 * 7 6 5 32 32 H 1.09000 * 109.63110 * 302.29922 * 8 7 6 33 33 H 1.08996 * 109.78817 * 181.80685 * 8 7 6 34 34 H 1.09000 * 109.63518 * 291.60246 * 10 9 8 35 35 H 1.09005 * 109.63321 * 171.00968 * 10 9 8 36 36 H 0.96996 * 119.99546 * 5.23251 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6141 0.7153 -0.0032 5 6 4.8350 1.5989 -0.0064 6 7 5.3030 1.7823 -1.3866 7 6 5.8557 0.5367 -1.9235 8 6 5.9237 0.6137 -3.4526 9 16 7.0415 1.9728 -3.9130 10 6 6.3755 3.3544 -2.9350 11 6 6.2452 2.9001 -1.4772 12 1 7.2202 2.5811 -1.1088 13 6 5.7437 4.0470 -0.6382 14 1 4.6831 4.2353 -0.5596 15 6 6.6387 4.8560 0.0293 16 7 7.9300 4.7210 -0.1803 17 14 6.0168 6.1492 1.2252 18 1 7.1702 6.8854 1.8022 19 1 5.1306 7.1010 0.5085 20 1 5.2553 5.4892 2.3160 21 7 3.6087 -0.6341 0.0030 22 1 4.3908 -1.2079 0.0059 23 7 2.2741 -1.0599 0.0049 24 1 -0.3634 0.0042 1.0276 25 1 -0.3634 0.8879 -0.5176 26 1 -0.3634 -0.8921 -0.5102 27 1 1.9923 2.1598 0.0004 28 1 5.6226 1.1324 0.5854 29 1 4.5831 2.5682 0.4237 30 1 5.2185 -0.2979 -1.6308 31 1 6.8582 0.3846 -1.5236 32 1 4.9288 0.8057 -3.8542 33 1 6.3051 -0.3257 -3.8528 34 1 5.3954 3.6364 -3.3196 35 1 7.0540 4.2055 -2.9940 36 1 8.2494 4.1060 -0.8589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259638272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:59 Heat of formation + Delta-G solvation = 72.182506 kcal Electronic energy + Delta-G solvation = -18647.565197 eV Core-core repulsion = 15873.204114 eV Total energy + Delta-G solvation = -2774.361084 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99438 -37.73534 -33.60203 -32.72373 -31.31396 -30.26461 -28.65138 -27.68647 -25.17415 -24.57117 -22.40805 -20.43465 -20.01329 -19.60025 -17.26015 -16.97772 -15.83417 -15.25117 -14.97377 -14.40213 -13.87606 -13.70624 -13.64710 -13.37538 -13.15947 -12.76413 -12.63639 -12.56747 -12.13280 -11.95511 -11.60708 -11.35931 -11.28590 -10.92277 -10.63654 -10.53125 -10.23462 -10.22047 -9.44773 -9.04791 -8.80303 -8.52434 -8.28215 -7.65463 -7.13221 -6.62374 -4.37899 2.12859 2.40285 3.03186 3.09245 3.17915 3.32778 3.34132 3.51422 4.31770 4.55713 4.90575 5.00295 5.10579 5.24901 5.41068 5.50254 5.57221 5.63951 5.65838 5.81160 5.83630 6.00634 6.11419 6.15312 6.16531 6.24567 6.39882 6.51714 6.75290 6.95276 7.02646 7.36487 7.54004 7.70537 7.94716 8.04217 8.28415 8.56434 9.33998 10.73363 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.007799 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.692003 B = 3589.473889 C = 5073.228838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.070 3.930 3 C -0.259 4.259 4 C 0.115 3.885 5 C 0.124 3.876 6 N -0.539 5.539 7 C 0.052 3.948 8 C -0.061 4.061 9 S -0.334 6.334 10 C -0.037 4.037 11 C 0.202 3.798 12 H 0.026 0.974 13 C -0.596 4.596 14 H 0.065 0.935 15 C 0.029 3.971 16 N -0.895 5.895 17 Si 1.065 2.935 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.481 5.481 22 H 0.431 0.569 23 N -0.309 5.309 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.146 0.854 28 H 0.034 0.966 29 H 0.133 0.867 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.232 -7.069 -0.145 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 C -0.288 4.288 4 C -0.014 4.014 5 C -0.005 4.005 6 N -0.264 5.264 7 C -0.078 4.078 8 C -0.210 4.210 9 S -0.107 6.107 10 C -0.186 4.186 11 C 0.095 3.905 12 H 0.044 0.956 13 C -0.636 4.636 14 H 0.083 0.917 15 C -0.179 4.179 16 N -0.529 5.529 17 Si 0.892 3.108 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.190 5.190 22 H 0.275 0.725 23 N -0.133 5.133 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.164 0.836 28 H 0.052 0.948 29 H 0.150 0.850 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.194 -7.076 -0.103 10.091 hybrid contribution -0.305 -0.816 -0.082 0.875 sum -7.499 -7.891 -0.185 10.888 Atomic orbital electron populations 1.20129 0.87138 1.02979 1.02594 1.22275 0.96733 0.91016 0.99593 1.21102 0.90923 0.99680 1.17140 1.21476 0.97957 0.84010 0.97914 1.20727 0.89857 0.99522 0.90398 1.61172 1.42002 1.04102 1.19160 1.22229 0.98158 0.93529 0.93865 1.23260 1.01202 0.98315 0.98179 1.86597 1.47678 1.11564 1.64827 1.24113 1.02308 0.94994 0.97141 1.19560 0.90948 0.89071 0.90925 0.95624 1.21830 0.95613 1.14260 1.31897 0.91683 1.25933 0.94004 0.99240 0.98716 1.70804 1.14112 1.35482 1.32532 0.83590 0.75565 0.75774 0.75872 1.20669 1.21048 1.21032 1.46381 1.06847 1.05339 1.60407 0.72528 1.77150 0.86768 1.22696 1.26715 0.90832 0.90526 0.91346 0.83649 0.94809 0.84962 0.91944 0.94322 0.89908 0.88879 0.90562 0.88575 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.45 36.00 0.38 -0.38 16 2 C 0.07 1.06 7.22 -82.41 -0.59 0.47 16 3 C -0.26 -4.22 10.65 -40.01 -0.43 -4.65 16 4 C 0.12 1.93 6.07 -82.27 -0.50 1.43 16 5 C 0.12 2.28 5.23 -4.98 -0.03 2.26 16 6 N -0.54 -10.53 4.27 -229.87 -0.98 -11.51 16 7 C 0.05 0.90 5.27 -3.93 -0.02 0.88 16 8 C -0.06 -1.02 6.69 37.29 0.25 -0.77 16 9 S -0.33 -6.49 22.40 -107.50 -2.41 -8.90 16 10 C -0.04 -0.81 5.95 37.29 0.22 -0.58 16 11 C 0.20 4.55 1.63 -68.97 -0.11 4.44 16 12 H 0.03 0.66 6.44 -51.93 -0.33 0.32 16 13 C -0.60 -14.46 6.42 -34.44 -0.22 -14.68 16 14 H 0.07 1.59 7.25 -52.49 -0.38 1.21 16 15 C 0.03 0.73 5.45 -17.82 -0.10 0.63 16 16 N -0.90 -24.55 13.55 55.43 0.75 -23.80 16 17 Si 1.06 22.66 29.91 -169.99 -5.08 17.57 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 21 N -0.48 -7.38 6.46 33.48 0.22 -7.16 16 22 H 0.43 5.58 8.22 -182.60 -1.50 4.07 16 23 N -0.31 -5.01 12.70 33.67 0.43 -4.58 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 28 H 0.03 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.13 2.67 5.69 -51.93 -0.30 2.38 16 30 H 0.06 0.96 5.57 -51.93 -0.29 0.67 16 31 H 0.04 0.70 7.91 -51.93 -0.41 0.29 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.10 2.21 8.14 -51.93 -0.42 1.79 16 36 H 0.27 7.56 6.79 -40.82 -0.28 7.28 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -27.55 302.63 -9.76 -37.31 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.09 Total: 7.48 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.15 Total: -10.97 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.41 Total: -47.05 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.08 Total: 17.57 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -2.41 Total: -8.90 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.55 -9.76 -37.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259638272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.491 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds