Wall clock time and date at job start Mon Mar 30 2020 04:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39875 * 125.89918 * 2 1 4 4 C 1.35312 * 107.91762 * 180.14024 * 3 2 1 5 5 C 1.50701 * 126.12522 * 179.90069 * 4 3 2 6 6 N 1.46890 * 109.47405 * 264.71427 * 5 4 3 7 7 C 1.46471 * 111.00402 * 290.73554 * 6 5 4 8 8 C 1.53251 * 109.86041 * 162.23208 * 7 6 5 9 9 S 1.81900 * 108.50438 * 62.00728 * 8 7 6 10 10 C 1.81899 * 101.91272 * 308.69221 * 9 8 7 11 11 C 1.46466 * 111.00030 * 164.75290 * 6 5 4 12 12 H 1.09001 * 109.34371 * 77.68966 * 11 6 5 13 13 C 1.50697 * 109.41020 * 317.88777 * 11 6 5 14 14 H 1.07997 * 119.99806 * 325.02796 * 13 11 6 15 15 C 1.37880 * 120.00404 * 145.02077 * 13 11 6 16 16 N 1.31516 * 119.99847 * 7.44520 * 15 13 11 17 17 Si 1.86797 * 120.00123 * 187.16435 * 15 13 11 18 18 H 1.48502 * 109.47333 * 180.27770 * 17 15 13 19 19 H 1.48496 * 109.47670 * 300.27979 * 17 15 13 20 20 H 1.48504 * 109.46880 * 60.28140 * 17 15 13 21 21 N 1.34946 * 107.74967 * 359.64003 * 4 3 2 22 22 H 0.97003 * 126.03725 * 180.24897 * 21 4 3 23 23 N 1.30838 * 125.89753 * 179.73619 * 2 1 3 24 24 H 1.08998 * 109.47680 * 270.23682 * 1 2 3 25 25 H 1.09008 * 109.47173 * 30.23792 * 1 2 3 26 26 H 1.09001 * 109.47216 * 150.23587 * 1 2 3 27 27 H 1.08000 * 126.03903 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.47122 * 144.71003 * 5 4 3 29 29 H 1.08998 * 109.47018 * 24.71842 * 5 4 3 30 30 H 1.09003 * 109.39887 * 42.11243 * 7 6 5 31 31 H 1.08996 * 109.33947 * 282.31226 * 7 6 5 32 32 H 1.09000 * 109.63110 * 302.29922 * 8 7 6 33 33 H 1.08996 * 109.78817 * 181.80685 * 8 7 6 34 34 H 1.09000 * 109.63518 * 291.60246 * 10 9 8 35 35 H 1.09005 * 109.63321 * 171.00968 * 10 9 8 36 36 H 0.96996 * 119.99546 * 5.23251 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6141 0.7153 -0.0032 5 6 4.8350 1.5989 -0.0064 6 7 5.3030 1.7823 -1.3866 7 6 5.8557 0.5367 -1.9235 8 6 5.9237 0.6137 -3.4526 9 16 7.0415 1.9728 -3.9130 10 6 6.3755 3.3544 -2.9350 11 6 6.2452 2.9001 -1.4772 12 1 7.2202 2.5811 -1.1088 13 6 5.7437 4.0470 -0.6382 14 1 4.6831 4.2353 -0.5596 15 6 6.6387 4.8560 0.0293 16 7 7.9300 4.7210 -0.1803 17 14 6.0168 6.1492 1.2252 18 1 7.1702 6.8854 1.8022 19 1 5.1306 7.1010 0.5085 20 1 5.2553 5.4892 2.3160 21 7 3.6087 -0.6341 0.0030 22 1 4.3908 -1.2079 0.0059 23 7 2.2741 -1.0599 0.0049 24 1 -0.3634 0.0042 1.0276 25 1 -0.3634 0.8879 -0.5176 26 1 -0.3634 -0.8921 -0.5102 27 1 1.9923 2.1598 0.0004 28 1 5.6226 1.1324 0.5854 29 1 4.5831 2.5682 0.4237 30 1 5.2185 -0.2979 -1.6308 31 1 6.8582 0.3846 -1.5236 32 1 4.9288 0.8057 -3.8542 33 1 6.3051 -0.3257 -3.8528 34 1 5.3954 3.6364 -3.3196 35 1 7.0540 4.2055 -2.9940 36 1 8.2494 4.1060 -0.8589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259638272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:58 Heat of formation + Delta-G solvation = 55.184286 kcal Electronic energy + Delta-G solvation = -18648.302295 eV Core-core repulsion = 15873.204114 eV Total energy + Delta-G solvation = -2775.098182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.23860 -39.34319 -35.37426 -33.95866 -32.66883 -31.96138 -30.08525 -28.71277 -27.02456 -26.08256 -24.01196 -22.03773 -21.39511 -20.75412 -19.05062 -18.28417 -17.48393 -16.93225 -16.40994 -15.69967 -15.62517 -15.10055 -15.08925 -14.87452 -14.46958 -14.07813 -13.90707 -13.68716 -13.56613 -13.44070 -13.15024 -12.86125 -12.69481 -12.57375 -12.28516 -12.22863 -11.92858 -11.51463 -11.03897 -10.70608 -10.35716 -10.20772 -9.57135 -9.28728 -8.72787 -8.64423 -6.38783 0.83815 0.87974 1.54095 1.60149 1.65928 1.81410 1.82716 1.92362 2.56052 2.98903 3.19791 3.66247 3.83159 3.84067 4.07169 4.15923 4.22539 4.32862 4.36010 4.45244 4.53277 4.67005 4.75224 4.79729 4.87556 4.94931 5.02549 5.12772 5.18429 5.36712 5.66072 5.79200 5.91196 6.23316 6.36279 6.39064 6.58163 6.74426 7.39884 8.71367 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.007799 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.692003 B = 3589.473889 C = 5073.228838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.070 3.930 3 C -0.269 4.269 4 C 0.107 3.893 5 C 0.132 3.868 6 N -0.540 5.540 7 C 0.053 3.947 8 C -0.052 4.052 9 S -0.337 6.337 10 C -0.033 4.033 11 C 0.210 3.790 12 H -0.007 1.007 13 C -0.591 4.591 14 H 0.063 0.937 15 C -0.016 4.016 16 N -0.928 5.928 17 Si 1.107 2.893 18 H -0.291 1.291 19 H -0.270 1.270 20 H -0.266 1.266 21 N -0.476 5.476 22 H 0.440 0.560 23 N -0.322 5.322 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.150 0.850 28 H 0.031 0.969 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.030 0.970 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.244 -8.251 -0.166 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.097 4.097 3 C -0.299 4.299 4 C -0.022 4.022 5 C 0.003 3.997 6 N -0.266 5.266 7 C -0.077 4.077 8 C -0.200 4.200 9 S -0.110 6.110 10 C -0.182 4.182 11 C 0.102 3.898 12 H 0.011 0.989 13 C -0.631 4.631 14 H 0.082 0.918 15 C -0.217 4.217 16 N -0.564 5.564 17 Si 0.929 3.071 18 H -0.217 1.217 19 H -0.195 1.195 20 H -0.191 1.191 21 N -0.186 5.186 22 H 0.285 0.715 23 N -0.147 5.147 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.168 0.832 28 H 0.049 0.951 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.224 -8.288 -0.131 12.401 hybrid contribution 0.270 -0.556 -0.115 0.629 sum -8.955 -8.844 -0.246 12.588 Atomic orbital electron populations 1.20294 0.84239 1.04187 1.04037 1.22883 0.98571 0.90026 0.98190 1.21340 0.91071 1.00485 1.17015 1.21145 0.97307 0.84507 0.99215 1.20510 0.90586 0.99011 0.89618 1.61141 1.40988 1.04481 1.19953 1.22278 0.98135 0.93048 0.94200 1.23393 1.00744 0.98224 0.97679 1.86578 1.48711 1.11732 1.63990 1.23757 1.01673 0.95474 0.97285 1.19321 0.89830 0.89666 0.91026 0.98943 1.22020 0.95344 1.14241 1.31498 0.91845 1.27126 0.93632 1.00831 1.00088 1.70919 1.15338 1.36642 1.33476 0.83056 0.75148 0.74094 0.74836 1.21731 1.19540 1.19059 1.46357 1.07230 1.04832 1.60199 0.71468 1.77150 0.86966 1.23299 1.27256 0.89181 0.89037 0.90433 0.83204 0.95051 0.86959 0.89498 0.95135 0.89511 0.85609 0.90791 0.90853 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.45 71.23 0.74 -0.54 16 2 C 0.07 1.94 7.22 43.10 0.31 2.25 16 3 C -0.27 -8.30 10.65 21.99 0.23 -8.06 16 4 C 0.11 3.43 6.07 41.40 0.25 3.69 16 5 C 0.13 4.81 5.23 85.56 0.45 5.26 16 6 N -0.54 -20.87 4.27 -881.18 -3.76 -24.63 16 7 C 0.05 1.75 5.27 86.47 0.46 2.20 16 8 C -0.05 -1.62 6.69 72.07 0.48 -1.14 16 9 S -0.34 -12.90 22.40 -56.49 -1.27 -14.16 16 10 C -0.03 -1.46 5.95 72.07 0.43 -1.03 16 11 C 0.21 9.63 1.63 44.33 0.07 9.70 16 12 H -0.01 -0.37 6.44 -2.39 -0.02 -0.39 16 13 C -0.59 -29.15 6.42 25.60 0.16 -28.99 16 14 H 0.06 3.11 7.25 -2.91 -0.02 3.09 16 15 C -0.02 -0.81 5.45 84.66 0.46 -0.35 16 16 N -0.93 -52.55 13.55 21.45 0.29 -52.26 16 17 Si 1.11 45.78 29.91 68.60 2.05 47.84 16 18 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 21 N -0.48 -13.68 6.46 -48.00 -0.31 -13.99 16 22 H 0.44 10.50 8.22 -213.32 -1.75 8.75 16 23 N -0.32 -9.69 12.70 -47.38 -0.60 -10.29 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.15 4.39 8.06 -2.91 -0.02 4.36 16 28 H 0.03 1.15 8.09 -2.38 -0.02 1.13 16 29 H 0.11 4.56 5.69 -2.39 -0.01 4.55 16 30 H 0.09 2.46 5.57 -2.39 -0.01 2.44 16 31 H 0.03 1.07 7.91 -2.39 -0.02 1.06 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.07 3.52 8.14 -2.38 -0.02 3.50 16 36 H 0.26 15.04 6.79 -92.71 -0.63 14.41 16 Total: -1.00 -59.39 302.63 -0.07 -59.46 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.52 Total: 25.06 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 4.05 Total: -17.02 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -4.39 Total: -101.18 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.05 Total: 47.84 kcal Atomic # 16 Polarization: -12.90 SS G_CDS: -1.27 Total: -14.16 kcal Total: -59.39 -0.07 -59.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259638272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.643 kcal (2) G-P(sol) polarization free energy of solvation -59.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds