Wall clock time and date at job start Mon Mar 30 2020 06:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46955 * 110.99722 * 2 1 4 4 C 1.53059 * 109.36338 * 183.18737 * 3 2 1 5 5 N 1.46951 * 109.36539 * 301.59962 * 4 3 2 6 6 C 1.46893 * 111.00069 * 183.18765 * 5 4 3 7 7 C 1.50698 * 109.47447 * 66.04798 * 6 5 4 8 8 C 1.33636 * 126.04005 * 89.71245 * 7 6 5 9 9 N 1.31779 * 114.50139 * 180.26936 * 8 7 6 10 10 C 1.29029 * 117.12689 * 359.97438 * 9 8 7 11 11 S 1.70984 * 110.16371 * 0.02562 * 10 9 8 12 12 C 1.46956 * 110.87933 * 59.31718 * 5 4 3 13 13 C 1.46951 * 111.00104 * 123.79928 * 2 1 3 14 14 H 1.09006 * 109.48705 * 296.77949 * 13 2 1 15 15 C 1.50698 * 109.48921 * 56.82384 * 13 2 1 16 16 H 1.07993 * 120.00114 * 35.40354 * 15 13 2 17 17 C 1.37887 * 119.99901 * 215.40719 * 15 13 2 18 18 N 1.31513 * 120.00056 * 5.63427 * 17 15 13 19 19 Si 1.86795 * 119.99754 * 185.64214 * 17 15 13 20 20 H 1.48501 * 109.47310 * 59.99800 * 19 17 15 21 21 H 1.48506 * 109.47021 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47334 * 299.99585 * 19 17 15 23 23 H 1.09006 * 109.46958 * 54.08699 * 1 2 3 24 24 H 1.09001 * 109.47239 * 174.08525 * 1 2 3 25 25 H 1.08995 * 109.47159 * 294.08944 * 1 2 3 26 26 H 1.08998 * 109.49325 * 63.21852 * 3 2 1 27 27 H 1.08997 * 109.51204 * 303.16565 * 3 2 1 28 28 H 1.08999 * 109.48595 * 181.62682 * 4 3 2 29 29 H 1.09001 * 109.48386 * 61.56595 * 4 3 2 30 30 H 1.09006 * 109.47306 * 306.04500 * 6 5 4 31 31 H 1.09002 * 109.47266 * 186.04837 * 6 5 4 32 32 H 1.08000 * 122.75211 * 0.24377 * 8 7 6 33 33 H 1.08002 * 124.91864 * 180.02562 * 10 9 8 34 34 H 1.08998 * 109.49117 * 60.65166 * 12 5 4 35 35 H 1.09000 * 109.49102 * 180.71403 * 12 5 4 36 36 H 0.96997 * 119.99669 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5660 1.0597 6 6 5.5191 0.5660 1.0598 7 6 6.0214 1.9658 1.3027 8 6 6.2784 2.5132 2.4945 9 7 6.7048 3.7590 2.4432 10 6 6.8223 4.2930 1.2745 11 16 6.3666 3.1725 0.0660 12 6 3.5235 -0.8060 1.0598 13 6 1.9957 -0.7632 1.1400 14 1 1.6938 -0.2820 2.0704 15 6 1.4501 -2.1674 1.1001 16 1 1.2905 -2.6579 0.1514 17 6 1.1546 -2.8258 2.2750 18 7 1.2431 -2.1922 3.4241 19 14 0.6288 -4.6178 2.2346 20 1 1.7078 -5.4367 1.6259 21 1 0.3711 -5.0894 3.6190 22 1 -0.6101 -4.7521 1.4268 23 1 -0.3633 0.6028 -0.8324 24 1 -0.3634 -1.0222 -0.1059 25 1 -0.3633 0.4194 0.9381 26 1 1.6937 1.8774 0.9173 27 1 1.6013 1.9132 -0.8600 28 1 3.9177 2.3449 -0.0513 29 1 3.8253 0.8480 -1.0106 30 1 5.8825 0.2119 0.0950 31 1 5.8824 -0.0925 1.8487 32 1 6.1471 1.9784 3.4236 33 1 7.1596 5.3017 1.0867 34 1 3.8254 -1.3114 0.1425 35 1 3.9178 -1.3469 1.9200 36 1 1.0349 -2.6554 4.2505 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259867560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:03 Heat of formation + Delta-G solvation = 63.985309 kcal Electronic energy + Delta-G solvation = -18481.297041 eV Core-core repulsion = 15706.580500 eV Total energy + Delta-G solvation = -2774.716541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.59251 -38.38818 -35.11166 -32.78833 -31.12617 -29.90737 -27.81242 -25.89454 -24.97101 -23.68406 -22.38797 -21.57551 -19.81510 -18.76759 -17.94876 -16.51826 -15.55297 -15.50377 -14.78211 -14.29993 -14.04857 -13.93696 -13.89039 -13.75524 -13.47556 -13.10873 -12.37124 -12.21919 -11.88049 -11.35366 -11.16317 -10.99048 -10.95128 -10.77348 -10.66034 -10.38080 -9.93447 -9.70360 -9.62057 -9.19684 -9.13368 -8.80655 -8.56281 -7.75891 -7.12800 -6.08729 -4.14538 0.76567 1.40144 1.79286 2.92941 3.27995 3.33483 3.35962 4.34260 4.38409 4.54968 4.99157 5.04245 5.23443 5.29375 5.35285 5.62245 5.75262 5.85829 5.91826 5.94531 6.21984 6.25293 6.28983 6.41571 6.53688 6.61093 6.65789 6.90664 7.18610 7.49551 7.55906 7.74066 7.76033 7.81883 8.02354 8.23658 8.60616 9.02390 9.51680 10.98041 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029796 B = 0.005072 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.495519 B = 5518.813679 C = 6020.601759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.546 5.546 3 C 0.058 3.942 4 C 0.060 3.940 5 N -0.537 5.537 6 C 0.127 3.873 7 C -0.188 4.188 8 C 0.040 3.960 9 N -0.470 5.470 10 C 0.007 3.993 11 S 0.105 5.895 12 C 0.077 3.923 13 C 0.207 3.793 14 H 0.043 0.957 15 C -0.509 4.509 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.887 5.887 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.013 0.987 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.177 0.823 33 H 0.195 0.805 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.712 9.288 -6.027 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.069 4.069 5 N -0.262 5.262 6 C -0.003 4.003 7 C -0.310 4.310 8 C -0.111 4.111 9 N -0.183 5.183 10 C -0.291 4.291 11 S 0.356 5.644 12 C -0.050 4.050 13 C 0.101 3.899 14 H 0.061 0.939 15 C -0.548 4.548 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.056 0.944 24 H 0.093 0.907 25 H 0.032 0.968 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.194 0.806 33 H 0.211 0.789 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.792 9.647 -6.409 14.541 hybrid contribution -0.357 -1.250 0.899 1.581 sum 8.435 8.398 -5.510 13.116 Atomic orbital electron populations 1.22007 0.88328 1.01999 0.97618 1.62356 1.07367 1.10374 1.47104 1.22017 0.93651 0.92176 0.99302 1.22151 0.95591 0.97399 0.91736 1.62373 1.03994 1.17361 1.42438 1.20460 0.89851 0.88801 1.01176 1.26035 1.08032 1.01881 0.95019 1.21760 1.00655 0.90025 0.98656 1.66324 1.15260 1.11038 1.25680 1.28285 1.05360 1.04731 0.90750 1.84014 1.60361 1.06307 1.13676 1.22523 0.98403 0.84644 0.99420 1.19448 0.88629 0.93479 0.88391 0.93878 1.20936 1.43203 0.98065 0.92566 0.92118 1.25021 0.94801 0.98303 0.95564 1.69943 1.48398 1.36334 0.97790 0.86620 0.79203 0.84978 0.76980 1.20102 1.21317 1.20159 0.94367 0.90656 0.96831 0.95280 0.92098 0.91794 0.94835 0.93995 0.88683 0.80584 0.78862 0.95693 0.90945 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.02 9.23 60.07 0.55 1.57 16 2 N -0.55 -12.03 4.78 -236.12 -1.13 -13.16 16 3 C 0.06 1.10 5.62 -3.76 -0.02 1.08 16 4 C 0.06 1.05 5.41 -3.77 -0.02 1.03 16 5 N -0.54 -10.14 4.70 -235.91 -1.11 -11.25 16 6 C 0.13 1.97 5.50 -4.98 -0.03 1.94 16 7 C -0.19 -2.67 5.32 -35.92 -0.19 -2.86 16 8 C 0.04 0.58 11.25 -19.19 -0.22 0.36 16 9 N -0.47 -6.72 10.54 -15.75 -0.17 -6.88 16 10 C 0.01 0.08 12.23 51.59 0.63 0.71 16 11 S 0.11 1.22 21.77 -107.50 -2.34 -1.12 16 12 C 0.08 1.70 4.87 -3.77 -0.02 1.68 16 13 C 0.21 5.11 2.12 -68.81 -0.15 4.97 16 14 H 0.04 1.24 7.23 -51.93 -0.38 0.86 16 15 C -0.51 -13.50 6.98 -34.44 -0.24 -13.74 16 16 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 17 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 18 N -0.89 -25.05 12.76 55.43 0.71 -24.34 16 19 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 24 H 0.07 1.65 7.08 -51.93 -0.37 1.29 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 28 H 0.06 1.02 5.92 -51.93 -0.31 0.71 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 31 H 0.10 1.41 8.03 -51.93 -0.42 0.99 16 32 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.19 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.68 8.07 -51.93 -0.42 1.26 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 304.86 15.07 4.59 4.59 Total: -1.00 -29.06 304.86 -9.49 -38.55 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.23 Total: -0.53 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 0.21 Total: -1.57 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -1.70 Total: -55.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.34 Total: -1.12 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.06 -9.49 -38.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.533 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds