Wall clock time and date at job start Mon Mar 30 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46955 * 110.99722 * 2 1 4 4 C 1.53059 * 109.36338 * 183.18737 * 3 2 1 5 5 N 1.46951 * 109.36539 * 301.59962 * 4 3 2 6 6 C 1.46893 * 111.00069 * 183.18765 * 5 4 3 7 7 C 1.50698 * 109.47447 * 66.04798 * 6 5 4 8 8 C 1.33636 * 126.04005 * 89.71245 * 7 6 5 9 9 N 1.31779 * 114.50139 * 180.26936 * 8 7 6 10 10 C 1.29029 * 117.12689 * 359.97438 * 9 8 7 11 11 S 1.70984 * 110.16371 * 0.02562 * 10 9 8 12 12 C 1.46956 * 110.87933 * 59.31718 * 5 4 3 13 13 C 1.46951 * 111.00104 * 123.79928 * 2 1 3 14 14 H 1.09006 * 109.48705 * 296.77949 * 13 2 1 15 15 C 1.50698 * 109.48921 * 56.82384 * 13 2 1 16 16 H 1.07993 * 120.00114 * 35.40354 * 15 13 2 17 17 C 1.37887 * 119.99901 * 215.40719 * 15 13 2 18 18 N 1.31513 * 120.00056 * 5.63427 * 17 15 13 19 19 Si 1.86795 * 119.99754 * 185.64214 * 17 15 13 20 20 H 1.48501 * 109.47310 * 59.99800 * 19 17 15 21 21 H 1.48506 * 109.47021 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47334 * 299.99585 * 19 17 15 23 23 H 1.09006 * 109.46958 * 54.08699 * 1 2 3 24 24 H 1.09001 * 109.47239 * 174.08525 * 1 2 3 25 25 H 1.08995 * 109.47159 * 294.08944 * 1 2 3 26 26 H 1.08998 * 109.49325 * 63.21852 * 3 2 1 27 27 H 1.08997 * 109.51204 * 303.16565 * 3 2 1 28 28 H 1.08999 * 109.48595 * 181.62682 * 4 3 2 29 29 H 1.09001 * 109.48386 * 61.56595 * 4 3 2 30 30 H 1.09006 * 109.47306 * 306.04500 * 6 5 4 31 31 H 1.09002 * 109.47266 * 186.04837 * 6 5 4 32 32 H 1.08000 * 122.75211 * 0.24377 * 8 7 6 33 33 H 1.08002 * 124.91864 * 180.02562 * 10 9 8 34 34 H 1.08998 * 109.49117 * 60.65166 * 12 5 4 35 35 H 1.09000 * 109.49102 * 180.71403 * 12 5 4 36 36 H 0.96997 * 119.99669 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5660 1.0597 6 6 5.5191 0.5660 1.0598 7 6 6.0214 1.9658 1.3027 8 6 6.2784 2.5132 2.4945 9 7 6.7048 3.7590 2.4432 10 6 6.8223 4.2930 1.2745 11 16 6.3666 3.1725 0.0660 12 6 3.5235 -0.8060 1.0598 13 6 1.9957 -0.7632 1.1400 14 1 1.6938 -0.2820 2.0704 15 6 1.4501 -2.1674 1.1001 16 1 1.2905 -2.6579 0.1514 17 6 1.1546 -2.8258 2.2750 18 7 1.2431 -2.1922 3.4241 19 14 0.6288 -4.6178 2.2346 20 1 1.7078 -5.4367 1.6259 21 1 0.3711 -5.0894 3.6190 22 1 -0.6101 -4.7521 1.4268 23 1 -0.3633 0.6028 -0.8324 24 1 -0.3634 -1.0222 -0.1059 25 1 -0.3633 0.4194 0.9381 26 1 1.6937 1.8774 0.9173 27 1 1.6013 1.9132 -0.8600 28 1 3.9177 2.3449 -0.0513 29 1 3.8253 0.8480 -1.0106 30 1 5.8825 0.2119 0.0950 31 1 5.8824 -0.0925 1.8487 32 1 6.1471 1.9784 3.4236 33 1 7.1596 5.3017 1.0867 34 1 3.8254 -1.3114 0.1425 35 1 3.9178 -1.3469 1.9200 36 1 1.0349 -2.6554 4.2505 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:01 Heat of formation + Delta-G solvation = 42.904649 kcal Electronic energy + Delta-G solvation = -18482.211167 eV Core-core repulsion = 15706.580500 eV Total energy + Delta-G solvation = -2775.630667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.70093 -39.93582 -36.67474 -34.76571 -32.38086 -31.66688 -29.25128 -27.37592 -26.66568 -24.95947 -24.06882 -23.14418 -20.95822 -20.41341 -19.01153 -18.47301 -17.13694 -16.69656 -16.53614 -15.73209 -15.55024 -15.37877 -15.28233 -15.17417 -14.80083 -14.62631 -13.99223 -13.67568 -13.34552 -12.93521 -12.87139 -12.77380 -12.56505 -12.40862 -12.11684 -12.04610 -11.73217 -11.51350 -11.01644 -10.63889 -10.59537 -10.22421 -9.84643 -9.25180 -8.94779 -8.14255 -6.26991 -0.22869 0.43320 0.81044 1.43101 1.44132 1.52414 1.88165 2.41163 3.00033 3.21783 3.45747 3.47643 3.84983 4.06299 4.19610 4.29568 4.41740 4.42816 4.55103 4.67180 4.68941 4.73924 4.80341 4.84396 4.94198 5.01087 5.17989 5.20411 5.36970 5.58637 5.69811 5.96314 6.11690 6.24382 6.37638 6.75213 6.76214 6.95805 7.43284 8.92258 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029796 B = 0.005072 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.495519 B = 5518.813679 C = 6020.601759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.551 5.551 3 C 0.055 3.945 4 C 0.065 3.935 5 N -0.551 5.551 6 C 0.132 3.868 7 C -0.216 4.216 8 C 0.033 3.967 9 N -0.502 5.502 10 C 0.019 3.981 11 S 0.152 5.848 12 C 0.094 3.906 13 C 0.211 3.789 14 H -0.004 1.004 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.019 3.981 18 N -0.923 5.923 19 Si 0.957 3.043 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.270 1.270 23 H 0.076 0.924 24 H 0.057 0.943 25 H -0.005 1.005 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.171 0.829 33 H 0.233 0.767 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.536 10.384 -7.971 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.276 5.276 3 C -0.073 4.073 4 C -0.063 4.063 5 N -0.276 5.276 6 C 0.003 3.997 7 C -0.337 4.337 8 C -0.118 4.118 9 N -0.216 5.216 10 C -0.278 4.278 11 S 0.404 5.596 12 C -0.034 4.034 13 C 0.104 3.896 14 H 0.014 0.986 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.181 4.181 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.195 1.195 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.013 0.987 26 H 0.029 0.971 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.188 0.812 33 H 0.249 0.751 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.623 10.755 -8.385 16.690 hybrid contribution -0.577 -1.437 1.442 2.116 sum 9.045 9.318 -6.943 14.726 Atomic orbital electron populations 1.21995 0.87839 1.01532 0.98183 1.62341 1.07964 1.12098 1.45215 1.22168 0.94893 0.90458 0.99786 1.22161 0.94469 0.98327 0.91342 1.62237 1.06452 1.15341 1.43580 1.20377 0.87453 0.90148 1.01742 1.25876 1.09508 1.02016 0.96297 1.21815 1.00633 0.90509 0.98845 1.66370 1.17001 1.11036 1.27198 1.28994 1.02908 1.05950 0.89960 1.83813 1.59350 1.04577 1.11885 1.22065 0.96670 0.86495 0.98216 1.19229 0.90383 0.92674 0.87307 0.98634 1.21162 1.43088 0.99060 0.92332 0.92653 1.25761 0.94944 1.02241 0.95118 1.70085 1.49838 1.37925 0.98347 0.85624 0.79049 0.80101 0.76967 1.19296 1.21180 1.19512 0.90547 0.92390 0.98683 0.97099 0.88850 0.89634 0.94217 0.92800 0.89000 0.81210 0.75106 0.95851 0.93186 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.19 9.23 127.69 1.18 3.37 16 2 N -0.55 -24.13 4.78 -900.96 -4.30 -28.43 16 3 C 0.06 2.04 5.62 86.31 0.48 2.53 16 4 C 0.07 2.18 5.41 86.31 0.47 2.64 16 5 N -0.55 -20.74 4.70 -900.30 -4.23 -24.97 16 6 C 0.13 4.01 5.50 85.56 0.47 4.48 16 7 C -0.22 -5.83 5.32 24.64 0.13 -5.69 16 8 C 0.03 0.94 11.25 83.66 0.94 1.88 16 9 N -0.50 -13.51 10.54 -203.74 -2.15 -15.66 16 10 C 0.02 0.38 12.23 130.65 1.60 1.97 16 11 S 0.15 3.05 21.77 -56.49 -1.23 1.82 16 12 C 0.09 4.22 4.87 86.31 0.42 4.64 16 13 C 0.21 10.75 2.12 44.18 0.09 10.84 16 14 H 0.00 -0.25 7.23 -2.38 -0.02 -0.27 16 15 C -0.52 -28.10 6.98 25.60 0.18 -27.92 16 16 H 0.06 3.01 7.82 -2.91 -0.02 2.99 16 17 C 0.02 1.05 5.45 84.66 0.46 1.52 16 18 N -0.92 -53.98 12.76 21.45 0.27 -53.71 16 19 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H 0.08 2.54 8.10 -2.38 -0.02 2.52 16 24 H 0.06 2.56 7.08 -2.39 -0.02 2.55 16 25 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.09 2.83 8.11 -2.39 -0.02 2.81 16 28 H 0.09 2.49 5.92 -2.39 -0.01 2.47 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.50 8.12 -2.38 -0.02 1.48 16 31 H 0.09 2.77 8.03 -2.39 -0.02 2.75 16 32 H 0.17 4.81 8.06 -2.91 -0.02 4.79 16 33 H 0.23 2.55 8.06 -2.91 -0.02 2.52 16 34 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 2.43 8.07 -2.39 -0.02 2.41 16 36 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -64.20 304.86 -2.13 -66.33 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.06 Total: 9.28 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.42 Total: 0.25 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -10.41 Total: -122.78 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.23 Total: 1.82 kcal Total: -64.20 -2.13 -66.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.235 kcal (2) G-P(sol) polarization free energy of solvation -64.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds